Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq11739 145 6e-30 >seq11739 Length=237542 Score = 145 bits (160), Expect = 6e-30 Identities = 303/449 (67%), Gaps = 13/449 (3%) Strand=Plus/Plus Query 125923 TTTATACCGCAATAGGTGCTTTAATAGCAGGGTGTGATTCATAATTTATCAATTCTAAAT 125982 |||| || || | |||||||||||| ||||| ||||| |||||| | | | ||| | || Sbjct 8635 TTTAAACAGCTACAGGTGCTTTAATTGCAGGATGTGACTCATAACCTGTAATTTCAATAT 8694 Query 125983 CTTCATAATTAATATCAAAAATTGATTTATCTGTATTAATTTTTAATTGAGGTGGTAGAT 126042 ||||| | |||| |||||||| ||| | | | ||| | ||||| ||| | | Sbjct 8695 CTTCAAATTTAAAGTCAAAAATATCCTTAATTTCAGGA--TTTAACTTGAGTTGGCACAG 8752 Query 126043 AACTA-----TCTCTTGATAATTGTGTATGTATTGCAT---CCATATGATTGGAATAAAT 126094 || || | || ||| || | || |||| | | | ||| || ||| | Sbjct 8753 TGGTAAGGGCTCACGTGTTAACTG---AAGTTTTGCTTGTTCAAAATGGTTAACATATAA 8809 Query 126095 ATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTCAAGTCCACATTCTTTTGCAAC 126154 ||||| ||| || || | || ||||| || | | ||||| ||| ||||| Sbjct 8810 ATGTGTATCACCGCCAGTCCAGACAAAATCACCTACGCCTAAACCACAAACTTGAGCAAC 8869 Query 126155 AAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACCTAAAAATATATCAGC 126214 | ||| ||||||| |||||| || |||||||| || || || ||||| || | ||| || Sbjct 8870 CATATGAGTCAGTAGAGCATAGCTGGCAATATTAAATGGCACCCCTAAGAAAACATCTGC 8929 Query 126215 ACTTCTTTGATATAATTGACAATTTAATTTACCCTCTTGTACGTAAAATTGAAACATTGT 126274 ||| | |||||| | ||| ||| || || || || || || ||||||| || | || Sbjct 8930 ACTACGTTGATAAAGTTGGCAAGACAACTTTCCATCCTGAACAAAAAATTGGAATAAAGT 8989 Query 126275 GTGGCAAGGTGGTAATGCCATTGAATCGATTTCAGTAGGATTCCATGCTGAAACAATGTG 126334 |||||| || ||||| || | | | | |||| | || ||||| | || ||||| Sbjct 8990 GTGGCATGGCGGTAAGGCAACTTTACCTGCTTCATTTGGGTTCCAGCCAGACACAATCAA 9049 Query 126335 ACGTCGAGAGTTTGGATTGGTTTTAATTT 126363 ||| || |||||||||||||| || |||| Sbjct 9050 ACGACGTGAGTTTGGATTGGTCTTGATTT 9078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408523409297213