Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_029119.1
Length=127726
Score E
Sequences producing significant alignments: (Bits) Value
seq11739 145 6e-30
>seq11739
Length=237542
Score = 145 bits (160), Expect = 6e-30
Identities = 303/449 (67%), Gaps = 13/449 (3%)
Strand=Plus/Plus
Query 125923 TTTATACCGCAATAGGTGCTTTAATAGCAGGGTGTGATTCATAATTTATCAATTCTAAAT 125982
|||| || || | |||||||||||| ||||| ||||| |||||| | | | ||| | ||
Sbjct 8635 TTTAAACAGCTACAGGTGCTTTAATTGCAGGATGTGACTCATAACCTGTAATTTCAATAT 8694
Query 125983 CTTCATAATTAATATCAAAAATTGATTTATCTGTATTAATTTTTAATTGAGGTGGTAGAT 126042
||||| | |||| |||||||| ||| | | | ||| | ||||| ||| | |
Sbjct 8695 CTTCAAATTTAAAGTCAAAAATATCCTTAATTTCAGGA--TTTAACTTGAGTTGGCACAG 8752
Query 126043 AACTA-----TCTCTTGATAATTGTGTATGTATTGCAT---CCATATGATTGGAATAAAT 126094
|| || | || ||| || | || |||| | | | ||| || ||| |
Sbjct 8753 TGGTAAGGGCTCACGTGTTAACTG---AAGTTTTGCTTGTTCAAAATGGTTAACATATAA 8809
Query 126095 ATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTCAAGTCCACATTCTTTTGCAAC 126154
||||| ||| || || | || ||||| || | | ||||| ||| |||||
Sbjct 8810 ATGTGTATCACCGCCAGTCCAGACAAAATCACCTACGCCTAAACCACAAACTTGAGCAAC 8869
Query 126155 AAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACCTAAAAATATATCAGC 126214
| ||| ||||||| |||||| || |||||||| || || || ||||| || | ||| ||
Sbjct 8870 CATATGAGTCAGTAGAGCATAGCTGGCAATATTAAATGGCACCCCTAAGAAAACATCTGC 8929
Query 126215 ACTTCTTTGATATAATTGACAATTTAATTTACCCTCTTGTACGTAAAATTGAAACATTGT 126274
||| | |||||| | ||| ||| || || || || || || ||||||| || | ||
Sbjct 8930 ACTACGTTGATAAAGTTGGCAAGACAACTTTCCATCCTGAACAAAAAATTGGAATAAAGT 8989
Query 126275 GTGGCAAGGTGGTAATGCCATTGAATCGATTTCAGTAGGATTCCATGCTGAAACAATGTG 126334
|||||| || ||||| || | | | | |||| | || ||||| | || |||||
Sbjct 8990 GTGGCATGGCGGTAAGGCAACTTTACCTGCTTCATTTGGGTTCCAGCCAGACACAATCAA 9049
Query 126335 ACGTCGAGAGTTTGGATTGGTTTTAATTT 126363
||| || |||||||||||||| || ||||
Sbjct 9050 ACGACGTGAGTTTGGATTGGTCTTGATTT 9078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408523409297213
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |