Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq13007 187 2e-42 seq12806 113 4e-20 seq8752 109 5e-19 >seq13007 Length=1899925 Score = 187 bits (206), Expect = 2e-42 Identities = 195/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || || |||||| | ||||| |||||||||||| | || || |||||||||||||||| Sbjct 1648465 CCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAAAACATG 1648524 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| | || | |||| |||||||| || ||||| || ||||| || || || ||| Sbjct 1648525 ATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAGATAAAC 1648584 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||| || || ||| |||| || |||||||||||||| || ||||| ||| Sbjct 1648585 ATCACCCAGCTGGGGCTCATGAACTCAACCATTACCTTCTGGAACACCACCTTGGAAGAT 1648644 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || | ||| |||||||| | ||||| || ||||| ||||| ||||| |||||||||| Sbjct 1648645 GAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGAATAGCC 1648704 Query 1515 TGTCTAACCCTTTTTG 1530 || || || || |||| Sbjct 1648705 TGCCTCACTCTCTTTG 1648720 >seq12806 Length=627889 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| |||||||||||||| || || ||||||||| Sbjct 422537 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGCGCATCGTGGCCTTCTTTGAG 422478 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||||||||| |||||||| | | || | |||| || |||| | Sbjct 422477 TTCGGAGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 422418 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 422417 ATCGCCCTGTGGATGACCGA 422398 >seq8752 Length=1377750 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 2462 TTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTA-CAAGATCTTGCAAACAG 2520 |||||||| | | ||||| ||||||| |||| ||| | |||| | || | | Sbjct 337855 TTTGGATAGTGGAAGGAAGTTCTGTCTGCAAGGAATCCATAAACAAGC-CAGGCCATCTT 337797 Query 2521 ATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATT 2580 | || ||| | |||||||| |||| || ||||| ||||||||| || ||||||||| Sbjct 337796 AGACTATTTGTGACAAGGATCATGCAGGAACTTGAAAGTGATACATTTTTTCCAGAAATT 337737 Query 2581 AATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAA 2640 || | || || |||| || | |||| |||||||||||| |||| || || || Sbjct 337736 GATTTGGAAAAGTATAAACTTCTCCCAGAATATCCAGGTGTTCCTTCTGATGTCCAGGAC 337677 Query 2641 GAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaaaaCATAAT 2689 ||||| || |||| ||||||||||| ||||||||| || | |||| Sbjct 337676 GAAAAAGGCATTAAGTACAAATTTGACGCATATGAAAAGAACAATTAAT 337628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414400730425276