Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq13007 187 2e-42
seq12806 113 4e-20
seq8752 109 5e-19
>seq13007
Length=1899925
Score = 187 bits (206), Expect = 2e-42
Identities = 195/256 (76%), Gaps = 0/256 (0%)
Strand=Plus/Plus
Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334
|| || |||||| | ||||| |||||||||||| | || || ||||||||||||||||
Sbjct 1648465 CCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAAAACATG 1648524
Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394
||| | || | |||| |||||||| || ||||| || ||||| || || || |||
Sbjct 1648525 ATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAGATAAAC 1648584
Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454
|| || |||| || || ||| |||| || |||||||||||||| || ||||| |||
Sbjct 1648585 ATCACCCAGCTGGGGCTCATGAACTCAACCATTACCTTCTGGAACACCACCTTGGAAGAT 1648644
Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514
|| | ||| |||||||| | ||||| || ||||| ||||| ||||| ||||||||||
Sbjct 1648645 GAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGAATAGCC 1648704
Query 1515 TGTCTAACCCTTTTTG 1530
|| || || || ||||
Sbjct 1648705 TGCCTCACTCTCTTTG 1648720
>seq12806
Length=627889
Score = 113 bits (124), Expect = 4e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | || ||||| |||||||||||||| || || |||||||||
Sbjct 422537 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGCGCATCGTGGCCTTCTTTGAG 422478
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| || || || ||||||||||| |||||||| | | || | |||| || |||| |
Sbjct 422477 TTCGGAGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 422418
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| ||||||||| ||
Sbjct 422417 ATCGCCCTGTGGATGACCGA 422398
>seq8752
Length=1377750
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 2462 TTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTA-CAAGATCTTGCAAACAG 2520
|||||||| | | ||||| ||||||| |||| ||| | |||| | || | |
Sbjct 337855 TTTGGATAGTGGAAGGAAGTTCTGTCTGCAAGGAATCCATAAACAAGC-CAGGCCATCTT 337797
Query 2521 ATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATT 2580
| || ||| | |||||||| |||| || ||||| ||||||||| || |||||||||
Sbjct 337796 AGACTATTTGTGACAAGGATCATGCAGGAACTTGAAAGTGATACATTTTTTCCAGAAATT 337737
Query 2581 AATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAA 2640
|| | || || |||| || | |||| |||||||||||| |||| || || ||
Sbjct 337736 GATTTGGAAAAGTATAAACTTCTCCCAGAATATCCAGGTGTTCCTTCTGATGTCCAGGAC 337677
Query 2641 GAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaaaaCATAAT 2689
||||| || |||| ||||||||||| ||||||||| || | ||||
Sbjct 337676 GAAAAAGGCATTAAGTACAAATTTGACGCATATGAAAAGAACAATTAAT 337628
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414400730425276
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |