Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq9470 136 3e-27 seq10366 134 1e-26 seq9538 114 1e-20 seq10734 107 2e-18 seq9639 93.3 3e-14 seq6415 93.3 3e-14 seq646 93.3 3e-14 seq4090 87.8 1e-12 seq7053 82.4 6e-11 >seq9470 Length=127963 Score = 136 bits (150), Expect = 3e-27 Identities = 214/304 (70%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 29609 GTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGG 29668 || || ||||| |||||| | |||||| | | || | | || || |||| || Sbjct 52576 GTCGGGAAGGGCAGGGGCTCGCGGGAGAGCTGCAGCTTCGCCTGCTCGACATGGTTCAGA 52635 Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728 |||| ||| || || ||||||||||| || ||||| || || | || |||||| | || Sbjct 52636 TAGAGGTGGGCGTCGCCCAGGGTGTGCACGAACTCGCCGGGCTGCAGGCCGGTGGCCTGG 52695 Query 29729 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATG 29788 ||| |||| || || || | |||| ||||||||| || ||||| ||||| || | Sbjct 52696 GCCGTCATCAGGGTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACGCCGAGGAACAGG 52755 Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 29848 || | || | |||||| ||| |||| || || | |||||| |||| | ||||| || Sbjct 52756 TCGGCCGAGCGCTGGTAAAGCAGGCAGGACAGTTTTCCGTCCGCCACGAAGAACTGGAAC 52815 Query 29849 ATGGCA-TGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACAC 29907 | |||| |||||||| || ||||||||| | | ||| ||||||||||| | || Sbjct 52816 A-GGCAGTGGCACGGCGGCAGGGCCATGTCGTCGACGTCGGCCGGGTTCCAGGCCGAGAC 52874 Query 29908 GATG 29911 |||| Sbjct 52875 GATG 52878 >seq10366 Length=3198051 Score = 134 bits (148), Expect = 1e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 29720 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCG 29779 |||| ||| || |||||||| ||||| || | ||||||||| ||||| |||||||| || Sbjct 2454624 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACACCC 2454565 Query 29780 AGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAA 29839 || |||||||| || |||| ||||| | |||||| || ||||| || | |||||| Sbjct 2454564 AGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAG 2454505 Query 29840 AACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| || | ||| ||||| || || |||||||||||| Sbjct 2454504 AACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGA 2454466 >seq9538 Length=646221 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728 |||| ||| || || ||||| ||||| || || || || |||| ||||| || || || Sbjct 487069 TAGATGTGCGCGTCACCCAGCGTGTGCACGAAATCGCCGGGTTTCAGCCCCGTCACCTGC 487010 Query 29729 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATG 29788 |||| ||| ||||| || | ||| |||||||| || ||||| ||||| ||| Sbjct 487009 GCCACCATCATGGTGAGCAGCGCATAGGAAGCGATGTTGAACGGCACGCCGAGAAAGATG 486950 Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 29848 ||| | || | ||||||||||||||| || ||| |||||| ||||| ||||| || Sbjct 486949 TCCGCGGAACGCTGGTAGAGCTGGCATGACAGCCGTCCGTCCGAAACGTAGAACTGGAAC 486890 Query 29849 ATGGCA-TGGCACGGAGGAAGGGCCAT 29874 | |||| ||||| || || || ||||| Sbjct 486889 A-GGCAGTGGCAGGGCGGCAGCGCCAT 486864 >seq10734 Length=9239 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 29674 GTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 29733 ||| ||||| ||||| ||||| || || || ||| | || |||||| | || |||| Sbjct 1843 GTGCGCATCGCCCAGCGTGTGCACGAAGTCGCCCACGCCCAGGCCGGTGGCCTGCGCCAC 1784 Query 29734 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCC 29793 ||||| || || || | ||||||||||||||| || ||||| ||||| ||||| || Sbjct 1783 CATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACTCCGAGGAAGATGTCGCC 1724 Query 29794 TGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGC 29853 | |||||| |||||||| ||||| ||||| |||||| ||||| ||| | Sbjct 1723 GCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAACAGGTT 1664 Query 29854 ATGGCACGG 29862 |||||||| Sbjct 1663 GTGGCACGG 1655 >seq9639 Length=103419 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 29726 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCC 29785 || |||| ||||| || || || | ||||||||||||||| ||||| || || || Sbjct 3783 TGGGCCAGCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAAG 3842 Query 29786 ATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 29845 |||||| | | |||||| |||||||| ||||| |||||| |||||| ||||| Sbjct 3843 ATGTCCGCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCGGCCACGTAGAACTGG 3902 Query 29846 CACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACAC 29905 | | ||| ||||| || || ||||| | || ||| ||||||||| | Sbjct 3903 AAGAAGGCGTGGCAGGGCATGAGCGCCATCTGCGGCAGGTCGGCCACGTTCCAGGCGCTG 3962 Query 29906 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA 29939 ||||||||||| | | || |||||| || ||| Sbjct 3963 ACGATGATGCGGCGGCTGTCCGGGTTGCTCTTGA 3996 >seq6415 Length=247467 Score = 93.3 bits (102), Expect = 3e-14 Identities = 171/246 (70%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 29659 GTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCC 29718 ||||| || |||| ||| || || || | ||||||||| ||||| ||||| || || || Sbjct 53547 GTGGTTCAGATAGAGGTGGGCGTCGCCGAAGGTGTGGACGAACTCGCCCGGCTCCAGGCC 53488 Query 29719 GGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCC 29778 | ||| | || | ||| || || || | |||| ||||||||| || |||||||| Sbjct 53487 GACGACCTTGGCGACCATCAGGGTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACCCC 53428 Query 29779 GAGCCCCATGTC--CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACG 29836 | || ||| | ||| | || ||||||||||| |||| |||||| ||| Sbjct 53427 TAAGAACACGTCGGCGCTG--CGTTGATAGAGCTGGCAGCTCAGCTTTCCGTCCGCGACG 53370 Query 29837 TAAAACTGACACATGGCA-TGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTT 29895 | ||||| ||| |||| ||||| || || ||||||||| | | || |||||| Sbjct 53369 AAGAACTGGAACA-GGCAGTGGCAGGGCGGCAGGGCCATGTCGTCGACATCGGCGGGGTT 53311 Query 29896 CCAGGC 29901 |||||| Sbjct 53310 CCAGGC 53305 >seq646 Length=687 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/210 (71%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728 |||| ||| || || || ||||| || || ||||| || || | || || ||||| || Sbjct 203 TAGAGGTGCGCGTCACCGAGGGTATGCACGAACTCGCCGGGCTTCAGGCCAGTGACCTGC 262 Query 29729 GC---CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCC 29785 || ||||||| || || || | ||| |||||||| |||||||| ||||| | Sbjct 263 GCGACCATCATG---GTCAGCAGGGCATAGGACGCGATGTTGAAGGGCACGCCGAGGAAC 319 Query 29786 ATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 29845 | ||| | || | ||||||||||||||| || ||| || | | ||||| |||||| Sbjct 320 ACATCCGCCGAGCGCTGGTAGAGCTGGCAGGACAGCCGGCCCTTGGCGACGTAGAACTGA 379 Query 29846 CACATGGCA-TGGCACGGAGGAAGGGCCAT 29874 ||| |||| || || || || || ||||| Sbjct 380 AACA-GGCAGTGACAGGGCGGCAGCGCCAT 408 >seq4090 Length=8080645 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 3526707 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 3526766 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| ||||| |||||| Sbjct 3526767 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 3526814 >seq7053 Length=464797 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728 |||| || || || ||||| || || || || || ||||| | || || ||||| || Sbjct 70272 TAGATATGCGCGTCACCCAGCGTATGAACGAAATCACCCGGCTTCAGGCCCGTGACCTGC 70331 Query 29729 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATG 29788 |||| ||| || || || | ||| ||||||||| || ||||| ||||| || Sbjct 70332 GCCACCATCAGTGTCAGCAGCGCATAGGAGGCGATGTTGAACGGCACGCCGAGGAAGATA 70391 Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 29848 || | || | ||| ||||||||||| || |||| ||| ||| || || ||||| || Sbjct 70392 TCGGCAGAGCGCTGATAGAGCTGGCAGGACAGCTTTCCATCGGAAACATAGAACTGGAAC 70451 Query 29849 ATGGCA-TGGCACGGAGGAAGGGCCAT 29874 | |||| || || || || | ||||| Sbjct 70452 A-GGCAGTGACAGGGCGGCAACGCCAT 70477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406088656233274