Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq9470 136 3e-27
seq10366 134 1e-26
seq9538 114 1e-20
seq10734 107 2e-18
seq9639 93.3 3e-14
seq6415 93.3 3e-14
seq646 93.3 3e-14
seq4090 87.8 1e-12
seq7053 82.4 6e-11
>seq9470
Length=127963
Score = 136 bits (150), Expect = 3e-27
Identities = 214/304 (70%), Gaps = 2/304 (1%)
Strand=Plus/Plus
Query 29609 GTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGG 29668
|| || ||||| |||||| | |||||| | | || | | || || |||| ||
Sbjct 52576 GTCGGGAAGGGCAGGGGCTCGCGGGAGAGCTGCAGCTTCGCCTGCTCGACATGGTTCAGA 52635
Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728
|||| ||| || || ||||||||||| || ||||| || || | || |||||| | ||
Sbjct 52636 TAGAGGTGGGCGTCGCCCAGGGTGTGCACGAACTCGCCGGGCTGCAGGCCGGTGGCCTGG 52695
Query 29729 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATG 29788
||| |||| || || || | |||| ||||||||| || ||||| ||||| || |
Sbjct 52696 GCCGTCATCAGGGTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACGCCGAGGAACAGG 52755
Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 29848
|| | || | |||||| ||| |||| || || | |||||| |||| | ||||| ||
Sbjct 52756 TCGGCCGAGCGCTGGTAAAGCAGGCAGGACAGTTTTCCGTCCGCCACGAAGAACTGGAAC 52815
Query 29849 ATGGCA-TGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACAC 29907
| |||| |||||||| || ||||||||| | | ||| ||||||||||| | ||
Sbjct 52816 A-GGCAGTGGCACGGCGGCAGGGCCATGTCGTCGACGTCGGCCGGGTTCCAGGCCGAGAC 52874
Query 29908 GATG 29911
||||
Sbjct 52875 GATG 52878
>seq10366
Length=3198051
Score = 134 bits (148), Expect = 1e-26
Identities = 125/159 (79%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 29720 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCG 29779
|||| ||| || |||||||| ||||| || | ||||||||| ||||| |||||||| ||
Sbjct 2454624 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACACCC 2454565
Query 29780 AGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAA 29839
|| |||||||| || |||| ||||| | |||||| || ||||| || | ||||||
Sbjct 2454564 AGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAG 2454505
Query 29840 AACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
||||| || | ||| ||||| || || ||||||||||||
Sbjct 2454504 AACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGA 2454466
>seq9538
Length=646221
Score = 114 bits (126), Expect = 1e-20
Identities = 151/207 (73%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728
|||| ||| || || ||||| ||||| || || || || |||| ||||| || || ||
Sbjct 487069 TAGATGTGCGCGTCACCCAGCGTGTGCACGAAATCGCCGGGTTTCAGCCCCGTCACCTGC 487010
Query 29729 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATG 29788
|||| ||| ||||| || | ||| |||||||| || ||||| ||||| |||
Sbjct 487009 GCCACCATCATGGTGAGCAGCGCATAGGAAGCGATGTTGAACGGCACGCCGAGAAAGATG 486950
Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 29848
||| | || | ||||||||||||||| || ||| |||||| ||||| ||||| ||
Sbjct 486949 TCCGCGGAACGCTGGTAGAGCTGGCATGACAGCCGTCCGTCCGAAACGTAGAACTGGAAC 486890
Query 29849 ATGGCA-TGGCACGGAGGAAGGGCCAT 29874
| |||| ||||| || || || |||||
Sbjct 486889 A-GGCAGTGGCAGGGCGGCAGCGCCAT 486864
>seq10734
Length=9239
Score = 107 bits (118), Expect = 2e-18
Identities = 137/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 29674 GTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 29733
||| ||||| ||||| ||||| || || || ||| | || |||||| | || ||||
Sbjct 1843 GTGCGCATCGCCCAGCGTGTGCACGAAGTCGCCCACGCCCAGGCCGGTGGCCTGCGCCAC 1784
Query 29734 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCC 29793
||||| || || || | ||||||||||||||| || ||||| ||||| ||||| ||
Sbjct 1783 CATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACTCCGAGGAAGATGTCGCC 1724
Query 29794 TGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGC 29853
| |||||| |||||||| ||||| ||||| |||||| ||||| ||| |
Sbjct 1723 GCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAACAGGTT 1664
Query 29854 ATGGCACGG 29862
||||||||
Sbjct 1663 GTGGCACGG 1655
>seq9639
Length=103419
Score = 93.3 bits (102), Expect = 3e-14
Identities = 149/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 29726 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCC 29785
|| |||| ||||| || || || | ||||||||||||||| ||||| || || ||
Sbjct 3783 TGGGCCAGCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAAG 3842
Query 29786 ATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 29845
|||||| | | |||||| |||||||| ||||| |||||| |||||| |||||
Sbjct 3843 ATGTCCGCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCGGCCACGTAGAACTGG 3902
Query 29846 CACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACAC 29905
| | ||| ||||| || || ||||| | || ||| ||||||||| |
Sbjct 3903 AAGAAGGCGTGGCAGGGCATGAGCGCCATCTGCGGCAGGTCGGCCACGTTCCAGGCGCTG 3962
Query 29906 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA 29939
||||||||||| | | || |||||| || |||
Sbjct 3963 ACGATGATGCGGCGGCTGTCCGGGTTGCTCTTGA 3996
>seq6415
Length=247467
Score = 93.3 bits (102), Expect = 3e-14
Identities = 171/246 (70%), Gaps = 6/246 (2%)
Strand=Plus/Minus
Query 29659 GTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCC 29718
||||| || |||| ||| || || || | ||||||||| ||||| ||||| || || ||
Sbjct 53547 GTGGTTCAGATAGAGGTGGGCGTCGCCGAAGGTGTGGACGAACTCGCCCGGCTCCAGGCC 53488
Query 29719 GGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCC 29778
| ||| | || | ||| || || || | |||| ||||||||| || ||||||||
Sbjct 53487 GACGACCTTGGCGACCATCAGGGTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACCCC 53428
Query 29779 GAGCCCCATGTC--CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACG 29836
| || ||| | ||| | || ||||||||||| |||| |||||| |||
Sbjct 53427 TAAGAACACGTCGGCGCTG--CGTTGATAGAGCTGGCAGCTCAGCTTTCCGTCCGCGACG 53370
Query 29837 TAAAACTGACACATGGCA-TGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTT 29895
| ||||| ||| |||| ||||| || || ||||||||| | | || ||||||
Sbjct 53369 AAGAACTGGAACA-GGCAGTGGCAGGGCGGCAGGGCCATGTCGTCGACATCGGCGGGGTT 53311
Query 29896 CCAGGC 29901
||||||
Sbjct 53310 CCAGGC 53305
>seq646
Length=687
Score = 93.3 bits (102), Expect = 3e-14
Identities = 149/210 (71%), Gaps = 8/210 (4%)
Strand=Plus/Plus
Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728
|||| ||| || || || ||||| || || ||||| || || | || || ||||| ||
Sbjct 203 TAGAGGTGCGCGTCACCGAGGGTATGCACGAACTCGCCGGGCTTCAGGCCAGTGACCTGC 262
Query 29729 GC---CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCC 29785
|| ||||||| || || || | ||| |||||||| |||||||| ||||| |
Sbjct 263 GCGACCATCATG---GTCAGCAGGGCATAGGACGCGATGTTGAAGGGCACGCCGAGGAAC 319
Query 29786 ATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 29845
| ||| | || | ||||||||||||||| || ||| || | | ||||| ||||||
Sbjct 320 ACATCCGCCGAGCGCTGGTAGAGCTGGCAGGACAGCCGGCCCTTGGCGACGTAGAACTGA 379
Query 29846 CACATGGCA-TGGCACGGAGGAAGGGCCAT 29874
||| |||| || || || || || |||||
Sbjct 380 AACA-GGCAGTGACAGGGCGGCAGCGCCAT 408
>seq4090
Length=8080645
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| || || || ||||| |||| || | ||||| | | ||||| |||||| || ||
Sbjct 3526707 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 3526766
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| ||||| |||||||| ||||||| ||||| ||||||
Sbjct 3526767 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 3526814
>seq7053
Length=464797
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/207 (70%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728
|||| || || || ||||| || || || || || ||||| | || || ||||| ||
Sbjct 70272 TAGATATGCGCGTCACCCAGCGTATGAACGAAATCACCCGGCTTCAGGCCCGTGACCTGC 70331
Query 29729 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATG 29788
|||| ||| || || || | ||| ||||||||| || ||||| ||||| ||
Sbjct 70332 GCCACCATCAGTGTCAGCAGCGCATAGGAGGCGATGTTGAACGGCACGCCGAGGAAGATA 70391
Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 29848
|| | || | ||| ||||||||||| || |||| ||| ||| || || ||||| ||
Sbjct 70392 TCGGCAGAGCGCTGATAGAGCTGGCAGGACAGCTTTCCATCGGAAACATAGAACTGGAAC 70451
Query 29849 ATGGCA-TGGCACGGAGGAAGGGCCAT 29874
| |||| || || || || | |||||
Sbjct 70452 A-GGCAGTGACAGGGCGGCAACGCCAT 70477
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406088656233274
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |