Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 349 3e-91
seq12849 104 2e-17
seq7661 104 2e-17
seq11415 102 7e-17
seq608 91.5 1e-13
>seq8995
Length=8301158
Score = 349 bits (386), Expect = 3e-91
Identities = 600/866 (69%), Gaps = 10/866 (1%)
Strand=Plus/Plus
Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330
||||| ||| || ||||| ||||| || || || | ||||||||||||||||| |||||
Sbjct 6971388 TACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAA 6971447
Query 4331 CGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTAC 4390
|||||| | | ||| || || | | || | | | | || || || ||
Sbjct 6971448 CGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCAC 6971507
Query 4391 AAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGC 4450
|| || || ||||| |||| | ||| || || ||||| | ||||||| || ||
Sbjct 6971508 GAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTTCACAGGCAGGGC 6971567
Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510
| || | ||||| |||||||| | || || | |||||| || |||| | | |
Sbjct 6971568 CTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTCCTTTACTCTCTG 6971627
Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570
||| || ||||| | | | || | |||| | || | ||| ||||| ||||||||
Sbjct 6971628 TTTCGAAGGTTTGTGCAACAGGTGTTTGAACATCAGGCAGGTAAAGTCACAGTGCAAACC 6971687
Query 4571 TTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTT 4630
|| ||||||||||| ||||| || |||||||| | || ||||| | |||| || ||
Sbjct 6971688 CTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTT 6971747
Query 4631 AAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGC 4690
||||| ||||||| ||||| || || |||||||| |||||||| || || ||||| ||
Sbjct 6971748 GAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 6971807
Query 4691 TACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAG 4749
||| | || || | | |||| ||||||| | |||| || ||||| | |
Sbjct 6971808 TACCACACGTTCTCCATATGTAGCTT-CTTTGTCCCCAGTCCAGCGCAAGGCCCAATCTG 6971866
Query 4750 CTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTTTTTCAA 4806
| || ||||| || || || || || | || || || || | ||| |||| ||
Sbjct 6971867 CCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAGAAATTCCCTTTCTT--- 6971923
Query 4807 ATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCT 4865
||| |||| ||| |||||||| || || || |||||||||||||||||||| |||||
Sbjct 6971924 -TGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCC 6971982
Query 4866 ATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAAT 4925
|| ||||| || || || || || || ||| || || | |||||||| | | |||
Sbjct 6971983 ATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTCTTGGCTAAAC 6972042
Query 4926 CTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGA 4985
| || || |||||||| |||||||| || ||||| |||||||| || |||| |||||
Sbjct 6972043 CGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGG 6972102
Query 4986 GATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAA 5045
|| ||||| || || |||||||| || || |||||| | | || || | |
Sbjct 6972103 GAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGG 6972162
Query 5046 TCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCA 5105
|| || || ||| | |||||||| || || || ||||| || ||||| ||||||||||
Sbjct 6972163 TCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCA 6972222
Query 5106 GGATACTGAATCGGAAGTATGACAAA 5131
| || | || |||| ||||||||
Sbjct 6972223 TGGTATTCGATAGGAAAGATGACAAA 6972248
Score = 183 bits (202), Expect = 3e-41
Identities = 301/434 (69%), Gaps = 0/434 (0%)
Strand=Plus/Plus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| || ||| ||||| ||| || ||||| ||||| || || || | ||||||||||||
Sbjct 6968509 TGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCC 6968568
Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAAT 4379
||||| ||||||||||| | | ||| || || | | || | | | | |
Sbjct 6968569 ATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAGT 6968628
Query 4380 CGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTC 4439
| || || || || || || ||||| |||| | ||| || || ||||| | ||
Sbjct 6968629 CTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTTC 6968688
Query 4440 ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCT 4499
||||| || || | || | ||||| |||||||| | || || | |||||| ||
Sbjct 6968689 ACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTCC 6968748
Query 4500 TTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCA 4559
|||| | | | ||| || ||||| | | | || | |||| | || | ||| |||
Sbjct 6968749 TTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAACATCAGGCAGGTAAAGTCA 6968808
Query 4560 CAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAA 4619
|| |||||||| || ||||||||||| ||||| || |||||||| | || ||||| |
Sbjct 6968809 CAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGT 6968868
Query 4620 CCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACG 4679
|||| || || ||||| ||||||| ||||| || || |||||||| |||||||| ||
Sbjct 6968869 CCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 6968928
Query 4680 GCGGCAAACGCTAC 4693
|| ||||| |||||
Sbjct 6968929 GCAGCAAAGGCTAC 6968942
>seq12849
Length=3269951
Score = 104 bits (114), Expect = 2e-17
Identities = 206/302 (68%), Gaps = 10/302 (3%)
Strand=Plus/Plus
Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824
|| ||| || ||||| || ||||| || | | ||||| |||||||| ||| || | ||
Sbjct 3071971 AGTGCTTGTGAAAACTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGTGGC 3072030
Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884
|||| | ||||| ||||||| | | | || || || || || |||| ||||||
Sbjct 3072031 TCCTCGTTCTGGCTTGGCAGCAA----CGTCATAGATGTAGGAGCTTGTGTCATAGATGA 3072086
Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941
||| ||||||||||| ||||| |||| ||||||||||||| ||| || | | ||
Sbjct 3072087 AGATTATAGAGGAAATGTTGGTGTTGTCCTGTTTAATTTTGGCAAAGAGAAGT-TTGAAG 3072145
Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAAT 32001
| |||||||| ||| | || || || ||||| ||| ||| || ||||
Sbjct 3072146 --TCAAAAAGGGTGATCAAATTGCACAGCTCATTTGTGAATGGATATTTTACCCAGAAAT 3072203
Query 32002 AGAAGTAGCTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCGG 32061
||| | || | | | ||||| ||| |||| || | ||||||||| || || ||
Sbjct 3072204 AGAGGAAGTTTAAATTTTAGATGACACTGAAAGGGGTTCAGGAGGCTTTGGTTCCACTGG 3072263
Query 32062 AA 32063
||
Sbjct 3072264 AA 3072265
>seq7661
Length=1898141
Score = 104 bits (114), Expect = 2e-17
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| || |||||||| | || ||||| | |||| || ||
Sbjct 818597 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 818538
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||||| ||||| || || |||||||| |||||||| || || ||||| |||
Sbjct 818537 AGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 818478
Query 4692 AC 4693
||
Sbjct 818477 AC 818476
Score = 89.7 bits (98), Expect = 4e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| |||||||||||| || || || |||||||||||||||||||| ||||| || |||
Sbjct 816928 TCTTTAATATAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 816869
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915
|| || || || || || || ||| || || | ||||||||
Sbjct 816868 ATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTC 816825
>seq11415
Length=1221423
Score = 102 bits (112), Expect = 7e-17
Identities = 120/162 (74%), Gaps = 4/162 (2%)
Strand=Plus/Plus
Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824
|| ||| || ||| | || ||||| || | | ||||| |||||||| ||| || | ||
Sbjct 353496 AGTGCTTGTGAAACCTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGTGGC 353555
Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884
|||| | ||||| ||||||| | | | || || || || || ||||| ||||||
Sbjct 353556 TCCTCGTTCTGGCTTGGCAGCAA----CGTCATAGATGTAGGAGCTGGTGTCATAGATGA 353611
Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926
||| ||||||||||| ||||| |||| |||||||||||||
Sbjct 353612 AGATTATAGAGGAAATGTTGGTGTTGTCCTGTTTAATTTTGG 353653
>seq608
Length=3558542
Score = 91.5 bits (100), Expect = 1e-13
Identities = 99/131 (76%), Gaps = 3/131 (2%)
Strand=Plus/Minus
Query 4920 CAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979
|||||||| || || ||||| || || || || ||||||||||||||||| || ||
Sbjct 2082500 CAAAATCTC---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAG 2082444
Query 4980 ACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTA 5039
| ||||| ||||| |||| || || | ||||| || |||||||| || | ||| ||
Sbjct 2082443 ATGTGAGAGATAAAATACTTCTCTTCCGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTT 2082384
Query 5040 GTTAAATCAAC 5050
| |||||||||
Sbjct 2082383 GATAAATCAAC 2082373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426971222919647
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |