Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq8995 349 3e-91 seq12849 104 2e-17 seq7661 104 2e-17 seq11415 102 7e-17 seq608 91.5 1e-13 >seq8995 Length=8301158 Score = 349 bits (386), Expect = 3e-91 Identities = 600/866 (69%), Gaps = 10/866 (1%) Strand=Plus/Plus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 ||||| ||| || ||||| ||||| || || || | ||||||||||||||||| ||||| Sbjct 6971388 TACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAA 6971447 Query 4331 CGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTAC 4390 |||||| | | ||| || || | | || | | | | || || || || Sbjct 6971448 CGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCAC 6971507 Query 4391 AAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGC 4450 || || || ||||| |||| | ||| || || ||||| | ||||||| || || Sbjct 6971508 GAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTTCACAGGCAGGGC 6971567 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 | || | ||||| |||||||| | || || | |||||| || |||| | | | Sbjct 6971568 CTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTCCTTTACTCTCTG 6971627 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570 ||| || ||||| | | | || | |||| | || | ||| ||||| |||||||| Sbjct 6971628 TTTCGAAGGTTTGTGCAACAGGTGTTTGAACATCAGGCAGGTAAAGTCACAGTGCAAACC 6971687 Query 4571 TTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTT 4630 || ||||||||||| ||||| || |||||||| | || ||||| | |||| || || Sbjct 6971688 CTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTT 6971747 Query 4631 AAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGC 4690 ||||| ||||||| ||||| || || |||||||| |||||||| || || ||||| || Sbjct 6971748 GAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 6971807 Query 4691 TACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAG 4749 ||| | || || | | |||| ||||||| | |||| || ||||| | | Sbjct 6971808 TACCACACGTTCTCCATATGTAGCTT-CTTTGTCCCCAGTCCAGCGCAAGGCCCAATCTG 6971866 Query 4750 CTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTTTTTCAA 4806 | || ||||| || || || || || | || || || || | ||| |||| || Sbjct 6971867 CCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAGAAATTCCCTTTCTT--- 6971923 Query 4807 ATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCT 4865 ||| |||| ||| |||||||| || || || |||||||||||||||||||| ||||| Sbjct 6971924 -TGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCC 6971982 Query 4866 ATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAAT 4925 || ||||| || || || || || || ||| || || | |||||||| | | ||| Sbjct 6971983 ATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTCTTGGCTAAAC 6972042 Query 4926 CTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGA 4985 | || || |||||||| |||||||| || ||||| |||||||| || |||| ||||| Sbjct 6972043 CGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGG 6972102 Query 4986 GATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAA 5045 || ||||| || || |||||||| || || |||||| | | || || | | Sbjct 6972103 GAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGG 6972162 Query 5046 TCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCA 5105 || || || ||| | |||||||| || || || ||||| || ||||| |||||||||| Sbjct 6972163 TCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCA 6972222 Query 5106 GGATACTGAATCGGAAGTATGACAAA 5131 | || | || |||| |||||||| Sbjct 6972223 TGGTATTCGATAGGAAAGATGACAAA 6972248 Score = 183 bits (202), Expect = 3e-41 Identities = 301/434 (69%), Gaps = 0/434 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || ||| ||||| ||| || ||||| ||||| || || || | |||||||||||| Sbjct 6968509 TGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCC 6968568 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAAT 4379 ||||| ||||||||||| | | ||| || || | | || | | | | | Sbjct 6968569 ATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAGT 6968628 Query 4380 CGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTC 4439 | || || || || || || ||||| |||| | ||| || || ||||| | || Sbjct 6968629 CTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTTC 6968688 Query 4440 ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCT 4499 ||||| || || | || | ||||| |||||||| | || || | |||||| || Sbjct 6968689 ACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTCC 6968748 Query 4500 TTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCA 4559 |||| | | | ||| || ||||| | | | || | |||| | || | ||| ||| Sbjct 6968749 TTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAACATCAGGCAGGTAAAGTCA 6968808 Query 4560 CAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAA 4619 || |||||||| || ||||||||||| ||||| || |||||||| | || ||||| | Sbjct 6968809 CAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGT 6968868 Query 4620 CCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACG 4679 |||| || || ||||| ||||||| ||||| || || |||||||| |||||||| || Sbjct 6968869 CCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 6968928 Query 4680 GCGGCAAACGCTAC 4693 || ||||| ||||| Sbjct 6968929 GCAGCAAAGGCTAC 6968942 >seq12849 Length=3269951 Score = 104 bits (114), Expect = 2e-17 Identities = 206/302 (68%), Gaps = 10/302 (3%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 || ||| || ||||| || ||||| || | | ||||| |||||||| ||| || | || Sbjct 3071971 AGTGCTTGTGAAAACTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGTGGC 3072030 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 |||| | ||||| ||||||| | | | || || || || || |||| |||||| Sbjct 3072031 TCCTCGTTCTGGCTTGGCAGCAA----CGTCATAGATGTAGGAGCTTGTGTCATAGATGA 3072086 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| ||||||||||| ||||| |||| ||||||||||||| ||| || | | || Sbjct 3072087 AGATTATAGAGGAAATGTTGGTGTTGTCCTGTTTAATTTTGGCAAAGAGAAGT-TTGAAG 3072145 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAAT 32001 | |||||||| ||| | || || || ||||| ||| ||| || |||| Sbjct 3072146 --TCAAAAAGGGTGATCAAATTGCACAGCTCATTTGTGAATGGATATTTTACCCAGAAAT 3072203 Query 32002 AGAAGTAGCTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCGG 32061 ||| | || | | | ||||| ||| |||| || | ||||||||| || || || Sbjct 3072204 AGAGGAAGTTTAAATTTTAGATGACACTGAAAGGGGTTCAGGAGGCTTTGGTTCCACTGG 3072263 Query 32062 AA 32063 || Sbjct 3072264 AA 3072265 >seq7661 Length=1898141 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || |||||||| | || ||||| | |||| || || Sbjct 818597 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 818538 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||||| ||||| || || |||||||| |||||||| || || ||||| ||| Sbjct 818537 AGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 818478 Query 4692 AC 4693 || Sbjct 818477 AC 818476 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| |||||||||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 816928 TCTTTAATATAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 816869 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || ||| || || | |||||||| Sbjct 816868 ATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTC 816825 >seq11415 Length=1221423 Score = 102 bits (112), Expect = 7e-17 Identities = 120/162 (74%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 || ||| || ||| | || ||||| || | | ||||| |||||||| ||| || | || Sbjct 353496 AGTGCTTGTGAAACCTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGTGGC 353555 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 |||| | ||||| ||||||| | | | || || || || || ||||| |||||| Sbjct 353556 TCCTCGTTCTGGCTTGGCAGCAA----CGTCATAGATGTAGGAGCTGGTGTCATAGATGA 353611 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||| ||||||||||| ||||| |||| ||||||||||||| Sbjct 353612 AGATTATAGAGGAAATGTTGGTGTTGTCCTGTTTAATTTTGG 353653 >seq608 Length=3558542 Score = 91.5 bits (100), Expect = 1e-13 Identities = 99/131 (76%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 4920 CAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979 |||||||| || || ||||| || || || || ||||||||||||||||| || || Sbjct 2082500 CAAAATCTC---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAG 2082444 Query 4980 ACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTA 5039 | ||||| ||||| |||| || || | ||||| || |||||||| || | ||| || Sbjct 2082443 ATGTGAGAGATAAAATACTTCTCTTCCGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTT 2082384 Query 5040 GTTAAATCAAC 5050 | ||||||||| Sbjct 2082383 GATAAATCAAC 2082373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426971222919647