Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_030696.1
Length=93139
Score E
Sequences producing significant alignments: (Bits) Value
seq9463 114 8e-21
>seq9463
Length=63583
Score = 114 bits (126), Expect = 8e-21
Identities = 238/342 (70%), Gaps = 22/342 (6%)
Strand=Plus/Minus
Query 48206 AATTGTCACCACAACTACACCGAGCGGGTCGAG-ATCGC--CGGCAAGAAAGTGTGGCTC 48262
|| || |||||||||||| || ||||| || ||| | |||||||| |||| ||
Sbjct 40229 AACTGCCACCACAACTACGTCGCGCGGG---AGCATCACTTCGGCAAGACGGTGTTCGTC 40173
Query 48263 ACGCGCAAGGGTGCAATCGACGCAAGCGAGGGTCGATATGGAC-TGATCCCCGGATCCAT 48321
|| |||||||| || | || ||||||| ||| ||| | | |||||||| || ||
Sbjct 40172 ACCCGCAAGGGGGCGGTGCGGGCCGGCGAGGG-CGAACTGGGCATCATCCCCGGCTCGAT 40114
Query 48322 GGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAATGAGTCCGGCCTCTTCTCTGCGCC 48381
|||| || || | |||| |||||||| ||||| | ||| ||| | ||||| ||
Sbjct 40113 GGGCGCCCGCTCGTTCATCGTGCGCGGCAAGGGGAACG----CGGACTCGT-TCTGCACC 40059
Query 48382 C-----CATGGTGCCGGCCGTCAGTATTCGC-GCACCCAGGCCAAGAAGCTGTTCACCCT 48435
|| || |||||||| | || || ||| | |||||||| || ||||| |
Sbjct 40058 TGCTCGCACGGCGCCGGCCGGGCG-ATGAGCCGCAACGAGGCCAAGCGGCGCTTCACGGT 40000
Query 48436 GGATGACCTCG-CCGACCGAATGAAGGGCATCGAATACCGCCACGGCGAAGAGTGGATCG 48494
||| |||| || ||| | | || |||| |||||| |||| | | || ||| |||||
Sbjct 39999 GGAGGACCACGTCCGCGCCACCGA-GGGCGTCGAATGCCGCAAGGACGCCGAGGTGATCG 39941
Query 48495 ACGAGATCCCGGACGCCTACAAGGACATCGACCAGGTGATGG 48536
|||| | ||| |||||||||||||||||| |||||||
Sbjct 39940 ACGAAACGCCGATGGCCTACAAGGACATCGACGCCGTGATGG 39899
Score = 104 bits (114), Expect = 1e-17
Identities = 109/142 (77%), Gaps = 1/142 (1%)
Strand=Plus/Minus
Query 47474 CTGCCGTTCATTCACCCTCACGTCGCCCTGATGCCGGATGCACACGGCGGCAAAGGATCT 47533
||||||||||| ||| ||||| || ||||||| || | ||| | |||| || |
Sbjct 40943 CTGCCGTTCATCCACAAGCACGTGGCGGTGATGCCCGACGTGCACTGGGGCATGGGCGCC 40884
Query 47534 GCCGTTGGCACGGTGATTCCCACCGTGGATGCCGTGATCCCGGCCGCGGTCGGCGTGGAC 47593
|||| ||| |||| || || ||||| | || | |||||||| ||||||||||| |||
Sbjct 40883 ACCGTCGGCTCGGTCATCCCGACCGTCGGGGCGATCATCCCGGCGGCGGTCGGCGTCGAC 40824
Query 47594 ATCGGCTGCGGCATGATCGGCG 47615
||||||||||||||||| ||||
Sbjct 40823 ATCGGCTGCGGCATGAT-GGCG 40803
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 297865322276900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |