Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_030696.1 Length=93139 Score E Sequences producing significant alignments: (Bits) Value seq9463 114 8e-21 >seq9463 Length=63583 Score = 114 bits (126), Expect = 8e-21 Identities = 238/342 (70%), Gaps = 22/342 (6%) Strand=Plus/Minus Query 48206 AATTGTCACCACAACTACACCGAGCGGGTCGAG-ATCGC--CGGCAAGAAAGTGTGGCTC 48262 || || |||||||||||| || ||||| || ||| | |||||||| |||| || Sbjct 40229 AACTGCCACCACAACTACGTCGCGCGGG---AGCATCACTTCGGCAAGACGGTGTTCGTC 40173 Query 48263 ACGCGCAAGGGTGCAATCGACGCAAGCGAGGGTCGATATGGAC-TGATCCCCGGATCCAT 48321 || |||||||| || | || ||||||| ||| ||| | | |||||||| || || Sbjct 40172 ACCCGCAAGGGGGCGGTGCGGGCCGGCGAGGG-CGAACTGGGCATCATCCCCGGCTCGAT 40114 Query 48322 GGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAATGAGTCCGGCCTCTTCTCTGCGCC 48381 |||| || || | |||| |||||||| ||||| | ||| ||| | ||||| || Sbjct 40113 GGGCGCCCGCTCGTTCATCGTGCGCGGCAAGGGGAACG----CGGACTCGT-TCTGCACC 40059 Query 48382 C-----CATGGTGCCGGCCGTCAGTATTCGC-GCACCCAGGCCAAGAAGCTGTTCACCCT 48435 || || |||||||| | || || ||| | |||||||| || ||||| | Sbjct 40058 TGCTCGCACGGCGCCGGCCGGGCG-ATGAGCCGCAACGAGGCCAAGCGGCGCTTCACGGT 40000 Query 48436 GGATGACCTCG-CCGACCGAATGAAGGGCATCGAATACCGCCACGGCGAAGAGTGGATCG 48494 ||| |||| || ||| | | || |||| |||||| |||| | | || ||| ||||| Sbjct 39999 GGAGGACCACGTCCGCGCCACCGA-GGGCGTCGAATGCCGCAAGGACGCCGAGGTGATCG 39941 Query 48495 ACGAGATCCCGGACGCCTACAAGGACATCGACCAGGTGATGG 48536 |||| | ||| |||||||||||||||||| ||||||| Sbjct 39940 ACGAAACGCCGATGGCCTACAAGGACATCGACGCCGTGATGG 39899 Score = 104 bits (114), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 47474 CTGCCGTTCATTCACCCTCACGTCGCCCTGATGCCGGATGCACACGGCGGCAAAGGATCT 47533 ||||||||||| ||| ||||| || ||||||| || | ||| | |||| || | Sbjct 40943 CTGCCGTTCATCCACAAGCACGTGGCGGTGATGCCCGACGTGCACTGGGGCATGGGCGCC 40884 Query 47534 GCCGTTGGCACGGTGATTCCCACCGTGGATGCCGTGATCCCGGCCGCGGTCGGCGTGGAC 47593 |||| ||| |||| || || ||||| | || | |||||||| ||||||||||| ||| Sbjct 40883 ACCGTCGGCTCGGTCATCCCGACCGTCGGGGCGATCATCCCGGCGGCGGTCGGCGTCGAC 40824 Query 47594 ATCGGCTGCGGCATGATCGGCG 47615 ||||||||||||||||| |||| Sbjct 40823 ATCGGCTGCGGCATGAT-GGCG 40803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 297865322276900