Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq9470 123 2e-23
seq9538 102 6e-17
seq9639 89.7 4e-13
seq646 89.7 4e-13
seq10734 84.2 2e-11
seq10366 82.4 6e-11
>seq9470
Length=127963
Score = 123 bits (136), Expect = 2e-23
Identities = 209/303 (69%), Gaps = 0/303 (0%)
Strand=Plus/Plus
Query 27103 GTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGG 27162
|| || ||||| |||||| | |||||| |||| | | || || || | |||
Sbjct 52576 GTCGGGAAGGGCAGGGGCTCGCGGGAGAGCTGCAGCTTCGCCTGCTCGACATGGTTCAGA 52635
Query 27163 TAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 27222
|||| ||| ||||| ||||||||||| || ||||| || || | || |||||| | ||
Sbjct 52636 TAGAGGTGGGCGTCGCCCAGGGTGTGCACGAACTCGCCGGGCTGCAGGCCGGTGGCCTGG 52695
Query 27223 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 27282
||| |||| || || || | |||| ||||||||| || || || ||||| || |
Sbjct 52696 GCCGTCATCAGGGTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACGCCGAGGAACAGG 52755
Query 27283 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACAT 27342
|| |||| | |||||| ||| | || || || | ||| || ||| | ||||| |
Sbjct 52756 TCGGCCGAGCGCTGGTAAAGCAGGCAGGACAGTTTTCCGTCCGCCACGAAGAACTGGAAC 52815
Query 27343 ATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACG 27402
| | ||||||||| || || |||||| | | | ||| ||||||||||| | |||
Sbjct 52816 AGGCAGTGGCACGGCGGCAGGGCCATGTCGTCGACGTCGGCCGGGTTCCAGGCCGAGACG 52875
Query 27403 ATG 27405
|||
Sbjct 52876 ATG 52878
>seq9538
Length=646221
Score = 102 bits (112), Expect = 6e-17
Identities = 146/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 27163 TAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 27222
|||| ||| ||||| ||||| ||||| || || || || |||| ||||| || || ||
Sbjct 487069 TAGATGTGCGCGTCACCCAGCGTGTGCACGAAATCGCCGGGTTTCAGCCCCGTCACCTGC 487010
Query 27223 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 27282
|||| ||| ||||| || | ||| |||||||| || || || ||||| |||
Sbjct 487009 GCCACCATCATGGTGAGCAGCGCATAGGAAGCGATGTTGAACGGCACGCCGAGAAAGATG 486950
Query 27283 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACAT 27342
||| | || | |||||||||||| || || ||| ||| || ||||| ||||| |
Sbjct 486949 TCCGCGGAACGCTGGTAGAGCTGGCATGACAGCCGTCCGTCCGAAACGTAGAACTGGAAC 486890
Query 27343 ATGGCGTGGCACGGAGGAAGAGCCAT 27368
| | |||||| || || || |||||
Sbjct 486889 AGGCAGTGGCAGGGCGGCAGCGCCAT 486864
>seq9639
Length=103419
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 27220 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 27279
|| |||| ||||| || || || | ||||||||||||||| ||||| || || ||
Sbjct 3783 TGGGCCAGCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAAG 3842
Query 27280 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGA 27339
|||||| | | |||||| ||||| || ||||| || ||| ||||| |||||
Sbjct 3843 ATGTCCGCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCGGCCACGTAGAACTGG 3902
Query 27340 CATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 27399
| | ||||||||| || || ||||| | || ||| |||||||||||
Sbjct 3903 AAGAAGGCGTGGCAGGGCATGAGCGCCATCTGCGGCAGGTCGGCCACGTTCCAGGCGCTG 3962
Query 27400 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA 27433
||||||||||| | | || |||||| || |||
Sbjct 3963 ACGATGATGCGGCGGCTGTCCGGGTTGCTCTTGA 3996
>seq646
Length=687
Score = 89.7 bits (98), Expect = 4e-13
Identities = 146/209 (70%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 27163 TAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 27222
|||| ||| ||||| || ||||| || || ||||| || || | || || ||||| ||
Sbjct 203 TAGAGGTGCGCGTCACCGAGGGTATGCACGAACTCGCCGGGCTTCAGGCCAGTGACCTGC 262
Query 27223 GC---CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 27279
|| ||||||| || || || | ||| |||||||| ||||| || ||||| |
Sbjct 263 GCGACCATCATG---GTCAGCAGGGCATAGGACGCGATGTTGAAGGGCACGCCGAGGAAC 319
Query 27280 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGA 27339
| ||| |||| | |||||||||||| || || ||| || | | ||||| ||||||
Sbjct 320 ACATCCGCCGAGCGCTGGTAGAGCTGGCAGGACAGCCGGCCCTTGGCGACGTAGAACTGA 379
Query 27340 CATATGGCGTGGCACGGAGGAAGAGCCAT 27368
| | | ||| || || || || |||||
Sbjct 380 AACAGGCAGTGACAGGGCGGCAGCGCCAT 408
>seq10734
Length=9239
Score = 84.2 bits (92), Expect = 2e-11
Identities = 132/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 27168 GTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 27227
||| || || ||||| ||||| || || || ||| | || |||||| | || ||||
Sbjct 1843 GTGCGCATCGCCCAGCGTGTGCACGAAGTCGCCCACGCCCAGGCCGGTGGCCTGCGCCAC 1784
Query 27228 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCC 27287
||||| || || || | ||||||||||||||| || || || ||||| ||||| ||
Sbjct 1783 CATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACTCCGAGGAAGATGTCGCC 1724
Query 27288 CGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGC 27347
| |||||| ||||| || ||||| || || ||||| ||||| | | |
Sbjct 1723 GCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAACAGGTT 1664
Query 27348 GTGGCACGG 27356
|||||||||
Sbjct 1663 GTGGCACGG 1655
>seq10366
Length=3198051
Score = 82.4 bits (90), Expect = 6e-11
Identities = 119/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548
||| || |||| || || || ||||||||||| ||||| || || ||||| || | ||
Sbjct 2452268 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCTAAATC 2452209
Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608
|| || | |||| ||||||| ||||| ||||||| ||| |||||||| ||
Sbjct 2452208 CCCTTCAGCTCTGTTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATC 2452149
Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656
||| || || || ||||| || || || || | ||| ||||| ||
Sbjct 2452148 CCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCC 2452101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369439383766229
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |