Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_030901.1 Length=92618 Score E Sequences producing significant alignments: (Bits) Value seq9463 100 2e-16 >seq9463 Length=63583 Score = 100 bits (110), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 46805 CTGCCGTTCATCCACCCTCACGTCGCTCTGATGCCGGATGCACACGGCGGCAAAGGATCT 46864 ||||||||||||||| ||||| || ||||||| || | ||| | |||| || | Sbjct 40943 CTGCCGTTCATCCACAAGCACGTGGCGGTGATGCCCGACGTGCACTGGGGCATGGGCGCC 40884 Query 46865 GCCGTTGGCACGGTGATACCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGAC 46924 |||| ||| |||| || || || || | || | |||||||| ||||||||||| ||| Sbjct 40883 ACCGTCGGCTCGGTCATCCCGACCGTCGGGGCGATCATCCCGGCGGCGGTCGGCGTCGAC 40824 Query 46925 ATCGGGTGCGGCATGATCGGCG 46946 ||||| ||||||||||| |||| Sbjct 40823 ATCGGCTGCGGCATGAT-GGCG 40803 Score = 98.7 bits (108), Expect = 6e-16 Identities = 253/366 (69%), Gaps = 26/366 (7%) Strand=Plus/Minus Query 47514 GCGACGTCGAAGTCCGGCGAATCAATTGCCACCACAACTACACCGAGCGGGTCGAG-ATC 47572 |||||| || || | |||| | || ||||||||||||||| || |||| ||| ||| Sbjct 40250 GCGACGACGGAGAC-GGCGG-TGAACTGCCACCACAACTACGTCGCGCGG---GAGCATC 40196 Query 47573 GC--CGGCAAGAAAGTGTGGCTCACACGCAAGGGTGCAATCGACGCAAGCGAGGGTCGAT 47630 | |||||||| |||| |||| |||||||| || | || ||||||| ||| Sbjct 40195 ACTTCGGCAAGACGGTGTTCGTCACCCGCAAGGGGGCGGTGCGGGCCGGCGAGGG-CGAA 40137 Query 47631 ATGGAC-TGATCCCCGGATCCATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAAT 47689 ||| | | |||||||| || |||||| || || | |||| |||||||| ||||| Sbjct 40136 CTGGGCATCATCCCCGGCTCGATGGGCGCCCGCTCGTTCATCGTGCGCGGCAAGGGGAAC 40077 Query 47690 GAGTCCGGCCTC-TTCT----CTGCGCCCCATGGTGCCGGCCGTCAGTATTCG-CGCACC 47743 | ||| ||| |||| |||| | || || |||||||| | || | |||| | Sbjct 40076 G----CGGACTCGTTCTGCACCTGC-TCGCACGGCGCCGGCCGGGCG-ATGAGCCGCAAC 40023 Query 47744 CAGGCCAGGAAGTTGTTCACCCTGGATGACCTCG-CCGACCGAATGAAGGGCATCGAATA 47802 |||||| | | ||||| |||| |||| || ||| | | | ||||| |||||| Sbjct 40022 GAGGCCAAGCGGCGCTTCACGGTGGAGGACCACGTCCGCGCCACCG-AGGGCGTCGAATG 39964 Query 47803 CCGCCACGGTGAGGAGTGGATTGACGAGATCCCCGA-CGCCTACAAGGATATCGACCAGG 47861 |||| | | | ||| ||| ||||| | | |||| ||||||||||| |||||| | Sbjct 39963 CCGCAAGGACGCCGAGGTGATCGACGA-AACGCCGATGGCCTACAAGGACATCGACGCCG 39905 Query 47862 TGATGG 47867 |||||| Sbjct 39904 TGATGG 39899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296198428260721