Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_030901.1
Length=92618
Score E
Sequences producing significant alignments: (Bits) Value
seq9463 100 2e-16
>seq9463
Length=63583
Score = 100 bits (110), Expect = 2e-16
Identities = 108/142 (76%), Gaps = 1/142 (1%)
Strand=Plus/Minus
Query 46805 CTGCCGTTCATCCACCCTCACGTCGCTCTGATGCCGGATGCACACGGCGGCAAAGGATCT 46864
||||||||||||||| ||||| || ||||||| || | ||| | |||| || |
Sbjct 40943 CTGCCGTTCATCCACAAGCACGTGGCGGTGATGCCCGACGTGCACTGGGGCATGGGCGCC 40884
Query 46865 GCCGTTGGCACGGTGATACCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGAC 46924
|||| ||| |||| || || || || | || | |||||||| ||||||||||| |||
Sbjct 40883 ACCGTCGGCTCGGTCATCCCGACCGTCGGGGCGATCATCCCGGCGGCGGTCGGCGTCGAC 40824
Query 46925 ATCGGGTGCGGCATGATCGGCG 46946
||||| ||||||||||| ||||
Sbjct 40823 ATCGGCTGCGGCATGAT-GGCG 40803
Score = 98.7 bits (108), Expect = 6e-16
Identities = 253/366 (69%), Gaps = 26/366 (7%)
Strand=Plus/Minus
Query 47514 GCGACGTCGAAGTCCGGCGAATCAATTGCCACCACAACTACACCGAGCGGGTCGAG-ATC 47572
|||||| || || | |||| | || ||||||||||||||| || |||| ||| |||
Sbjct 40250 GCGACGACGGAGAC-GGCGG-TGAACTGCCACCACAACTACGTCGCGCGG---GAGCATC 40196
Query 47573 GC--CGGCAAGAAAGTGTGGCTCACACGCAAGGGTGCAATCGACGCAAGCGAGGGTCGAT 47630
| |||||||| |||| |||| |||||||| || | || ||||||| |||
Sbjct 40195 ACTTCGGCAAGACGGTGTTCGTCACCCGCAAGGGGGCGGTGCGGGCCGGCGAGGG-CGAA 40137
Query 47631 ATGGAC-TGATCCCCGGATCCATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAAT 47689
||| | | |||||||| || |||||| || || | |||| |||||||| |||||
Sbjct 40136 CTGGGCATCATCCCCGGCTCGATGGGCGCCCGCTCGTTCATCGTGCGCGGCAAGGGGAAC 40077
Query 47690 GAGTCCGGCCTC-TTCT----CTGCGCCCCATGGTGCCGGCCGTCAGTATTCG-CGCACC 47743
| ||| ||| |||| |||| | || || |||||||| | || | |||| |
Sbjct 40076 G----CGGACTCGTTCTGCACCTGC-TCGCACGGCGCCGGCCGGGCG-ATGAGCCGCAAC 40023
Query 47744 CAGGCCAGGAAGTTGTTCACCCTGGATGACCTCG-CCGACCGAATGAAGGGCATCGAATA 47802
|||||| | | ||||| |||| |||| || ||| | | | ||||| ||||||
Sbjct 40022 GAGGCCAAGCGGCGCTTCACGGTGGAGGACCACGTCCGCGCCACCG-AGGGCGTCGAATG 39964
Query 47803 CCGCCACGGTGAGGAGTGGATTGACGAGATCCCCGA-CGCCTACAAGGATATCGACCAGG 47861
|||| | | | ||| ||| ||||| | | |||| ||||||||||| |||||| |
Sbjct 39963 CCGCAAGGACGCCGAGGTGATCGACGA-AACGCCGATGGCCTACAAGGACATCGACGCCG 39905
Query 47862 TGATGG 47867
||||||
Sbjct 39904 TGATGG 39899
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 296198428260721
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |