Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_030917.1
Length=93577
Score E
Sequences producing significant alignments: (Bits) Value
seq8824 529 1e-145
seq9463 145 5e-30
>seq8824
Length=455128
Score = 529 bits (586), Expect = 1e-145
Identities = 668/909 (73%), Gaps = 24/909 (3%)
Strand=Plus/Minus
Query 78263 GTGTGGGATCGACTCACCGGCAACTTCTGGTTGCCCGAGAAGGTACCGGTGTCCAACGAC 78322
|||||| | || || ||| || |||||| |||| || ||||| ||| | ||||| |||
Sbjct 416865 GTGTGGAACCGCCTGACCTCGAATTTCTGGCTGCCGGAAAAGGTGCCGCTCTCCAATGAC 416806
Query 78323 ATCCCATCCTGGGACACCCTTACGCCGGAAGAGAAGGAACTCACTATGCGTGTGTTCACC 78382
||||| ||||||| || || | |||||||||| || | || || || || || ||||||
Sbjct 416805 ATCCCCTCCTGGGGAACGCTGAAGCCGGAAGAGCAGAAGCTGACGATCCGCGTCTTCACC 416746
Query 78383 GGCCTCACCCTGCTCGACACCATCCAGGGCACAGTTGGCGCCATCTCGCTCATCGCCGA- 78441
|| || || ||||||||||||||||| | || |||||| | || || || ||
Sbjct 416745 GGGCTGACATTGCTCGACACCATCCAGAACGGCGTCGGCGCCGTGCGCCTGATGGCGGAT 416686
Query 78442 -CGCCAACACCCCGCACGAGGAGGCGGTGCTCACCAACATCGCGTTCATGGAGTCGGTAC 78500
|| |||| || ||| |||||||||||||| |||||||| | ||||||||| | || |
Sbjct 416685 TCGGCAACGCC--GCATGAGGAGGCGGTGCTTTCCAACATCTCCTTCATGGAGGCTGTCC 416628
Query 78501 ACGCCAAGTCCTACAGCTCGATCTTCTCAACGCTATGCTCCTCCAAGCAGATTGACGAGG 78560
||||| ||||| ||||||||||| || || ||| | || | | || || |
Sbjct 416627 ACGCCCGTTCCTATTCGTCGATCTTCTCGACACTGTGCCTCACCCCTGATGTCGATGATG 416568
Query 78561 CGTTCCGTTGGTCGGAGGAGAACGAGTACCTGCAGCGCAA---GGCCCAGATCGTCCTGG 78617
| | || ||||| ||||| ||||||| |||||||||||| ||| | ||| | | ||
Sbjct 416567 CCTATCGCTGGTCCGAGGAAAACGAGTTCCTGCAGCGCAAATCGGCGCTCATCATGCGGG 416508
Query 78618 ACTACTACCGCGGCGACGACCCCTTGAAGCGGAAGGTGGCCAGTACGCTCCTGGAGGGCT 78677
| || || | || ||||| ||||| |||| | ||||| | | ||||| |||
Sbjct 416507 AATATGACAGTGG---TGACCCGCTGAAGAAGAAGATCGCCAGCGTGTTTCTGGAAAGCT 416451
Query 78678 TCCTCTTCTACTCGGGCTTCTACCTGCCGATGTACTGGTCGAGCCGCGCCAAGCTGACGA 78737
|||| ||||| || |||||||| |||||||||| |||||| |||||||||||||| || |
Sbjct 416450 TCCTGTTCTATTCCGGCTTCTATCTGCCGATGTTCTGGTCAAGCCGCGCCAAGCTCACCA 416391
Query 78738 ACACCGCGGACGTGATCCGGTTGATTATCCGAGACGAAGCAGTTCATGGGTACTACATCG 78797
|||| ||||| ||||||| |||| ||||| ||||| || || || || || |||||||
Sbjct 416390 ACACGGCGGATTTGATCCGTCTGATCATCCGCGACGAGGCCGTGCACGGCTATTACATCG 416331
Query 78798 GATACAAGTACCAGCGAGGCCTCGA--GACCCAG-GGGCCGGCGCGGCAGGCTGAGCTCA 78854
| ||||||| |||||| | | || | | | | | | || | ||| ||| |||
Sbjct 416330 GCTACAAGTTCCAGCGGGCGGTGGATCGGCTCGGTGAGAAGGAAAGACAG---GAGATCA 416274
Query 78855 AGGAGTACACGTTCGATCTGCTCTCGGAGCTCTACGACAACGAGTGTGACTACACCGAGC 78914
|||| | | ||||| ||||| |||||| |||||||||||| | || |||||
Sbjct 416273 AGGATTTTGCCTTCGACCTGCTTCTGGAGCTTTACGACAACGAGGCGAAATATACCGAAG 416214
Query 78915 AGCTCTATGACGACGTCGGACTCACCGAGGATGTCAAGAAGTTCCTGCGCTACAACGGCA 78974
| || ||||||| |||||| || || ||||| |||||| ||||||||| ||||||| |
Sbjct 416213 ACCTTTATGACGGCGTCGGTCTGACGGAGGACGTCAAGCAGTTCCTGCATTACAACGCTA 416154
Query 78975 ACAAGGCGCTGATGAACCTCGGCTACGAAGCACTGTTCCCCAAGGAAGAGACCATGGCAG 79034
||||||| |||||||| || |||||||| |||||||| || || ||| || || | |
Sbjct 416153 ACAAGGCCCTGATGAATCTGGGCTACGAGGCACTGTTTCC---GGCCGAGGCC-TGCCGG 416098
Query 79035 ----ACCCGGCCATCATGTCCGCGCTCTCACCAGGCGGCGACGAGAACCACGACTTCTTC 79090
| ||||| ||| | ||||||||||| || | ||||| |||||||||||||||
Sbjct 416097 GTCAATCCGGCGATCCTCTCCGCGCTCTCGCCCAATGCTGACGAAAACCACGACTTCTTC 416038
Query 79091 TCCGGGTCGGGCTCGAGCTACGTCATCGGCAAAGCTGAAGCCACGGCAGATGAGGACTGG 79150
||||| || |||||| ||| ||||| ||||| || | ||||| | || |||||||||
Sbjct 416037 TCCGGTTCCGGCTCGTCCTATGTCATTGGCAAGGCGGTCGCCACCGAGGACGAGGACTGG 415978
Query 79151 GACTTCTGA 79159
|| ||||||
Sbjct 415977 GATTTCTGA 415969
>seq9463
Length=63583
Score = 145 bits (160), Expect = 5e-30
Identities = 118/142 (83%), Gaps = 1/142 (1%)
Strand=Plus/Minus
Query 45294 CTGCCGTTCATCCATCCGCACGTGGCGCTGATGCCGGATGCTCACAGCGGCAAGGGGTCC 45353
|||||||||||||| |||||||||| ||||||| || | ||| | |||| ||| ||
Sbjct 40943 CTGCCGTTCATCCACAAGCACGTGGCGGTGATGCCCGACGTGCACTGGGGCATGGGCGCC 40884
Query 45354 GCGGTCGGCACTGTGATCCCGACCGTCGATGCGGTGATCCCCGCGGCGGTCGGCGTCGAC 45413
| |||||| | || ||||||||||||| ||| | ||||| ||||||||||||||||||
Sbjct 40883 ACCGTCGGCTCGGTCATCCCGACCGTCGGGGCGATCATCCCGGCGGCGGTCGGCGTCGAC 40824
Query 45414 ATCGGCTGCGGCATGATCGGCG 45435
||||||||||||||||| ||||
Sbjct 40823 ATCGGCTGCGGCATGAT-GGCG 40803
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 299266665039062
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |