Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq8824 529 1e-145 seq9463 145 5e-30 >seq8824 Length=455128 Score = 529 bits (586), Expect = 1e-145 Identities = 668/909 (73%), Gaps = 24/909 (3%) Strand=Plus/Minus Query 78263 GTGTGGGATCGACTCACCGGCAACTTCTGGTTGCCCGAGAAGGTACCGGTGTCCAACGAC 78322 |||||| | || || ||| || |||||| |||| || ||||| ||| | ||||| ||| Sbjct 416865 GTGTGGAACCGCCTGACCTCGAATTTCTGGCTGCCGGAAAAGGTGCCGCTCTCCAATGAC 416806 Query 78323 ATCCCATCCTGGGACACCCTTACGCCGGAAGAGAAGGAACTCACTATGCGTGTGTTCACC 78382 ||||| ||||||| || || | |||||||||| || | || || || || || |||||| Sbjct 416805 ATCCCCTCCTGGGGAACGCTGAAGCCGGAAGAGCAGAAGCTGACGATCCGCGTCTTCACC 416746 Query 78383 GGCCTCACCCTGCTCGACACCATCCAGGGCACAGTTGGCGCCATCTCGCTCATCGCCGA- 78441 || || || ||||||||||||||||| | || |||||| | || || || || Sbjct 416745 GGGCTGACATTGCTCGACACCATCCAGAACGGCGTCGGCGCCGTGCGCCTGATGGCGGAT 416686 Query 78442 -CGCCAACACCCCGCACGAGGAGGCGGTGCTCACCAACATCGCGTTCATGGAGTCGGTAC 78500 || |||| || ||| |||||||||||||| |||||||| | ||||||||| | || | Sbjct 416685 TCGGCAACGCC--GCATGAGGAGGCGGTGCTTTCCAACATCTCCTTCATGGAGGCTGTCC 416628 Query 78501 ACGCCAAGTCCTACAGCTCGATCTTCTCAACGCTATGCTCCTCCAAGCAGATTGACGAGG 78560 ||||| ||||| ||||||||||| || || ||| | || | | || || | Sbjct 416627 ACGCCCGTTCCTATTCGTCGATCTTCTCGACACTGTGCCTCACCCCTGATGTCGATGATG 416568 Query 78561 CGTTCCGTTGGTCGGAGGAGAACGAGTACCTGCAGCGCAA---GGCCCAGATCGTCCTGG 78617 | | || ||||| ||||| ||||||| |||||||||||| ||| | ||| | | || Sbjct 416567 CCTATCGCTGGTCCGAGGAAAACGAGTTCCTGCAGCGCAAATCGGCGCTCATCATGCGGG 416508 Query 78618 ACTACTACCGCGGCGACGACCCCTTGAAGCGGAAGGTGGCCAGTACGCTCCTGGAGGGCT 78677 | || || | || ||||| ||||| |||| | ||||| | | ||||| ||| Sbjct 416507 AATATGACAGTGG---TGACCCGCTGAAGAAGAAGATCGCCAGCGTGTTTCTGGAAAGCT 416451 Query 78678 TCCTCTTCTACTCGGGCTTCTACCTGCCGATGTACTGGTCGAGCCGCGCCAAGCTGACGA 78737 |||| ||||| || |||||||| |||||||||| |||||| |||||||||||||| || | Sbjct 416450 TCCTGTTCTATTCCGGCTTCTATCTGCCGATGTTCTGGTCAAGCCGCGCCAAGCTCACCA 416391 Query 78738 ACACCGCGGACGTGATCCGGTTGATTATCCGAGACGAAGCAGTTCATGGGTACTACATCG 78797 |||| ||||| ||||||| |||| ||||| ||||| || || || || || ||||||| Sbjct 416390 ACACGGCGGATTTGATCCGTCTGATCATCCGCGACGAGGCCGTGCACGGCTATTACATCG 416331 Query 78798 GATACAAGTACCAGCGAGGCCTCGA--GACCCAG-GGGCCGGCGCGGCAGGCTGAGCTCA 78854 | ||||||| |||||| | | || | | | | | | || | ||| ||| ||| Sbjct 416330 GCTACAAGTTCCAGCGGGCGGTGGATCGGCTCGGTGAGAAGGAAAGACAG---GAGATCA 416274 Query 78855 AGGAGTACACGTTCGATCTGCTCTCGGAGCTCTACGACAACGAGTGTGACTACACCGAGC 78914 |||| | | ||||| ||||| |||||| |||||||||||| | || ||||| Sbjct 416273 AGGATTTTGCCTTCGACCTGCTTCTGGAGCTTTACGACAACGAGGCGAAATATACCGAAG 416214 Query 78915 AGCTCTATGACGACGTCGGACTCACCGAGGATGTCAAGAAGTTCCTGCGCTACAACGGCA 78974 | || ||||||| |||||| || || ||||| |||||| ||||||||| ||||||| | Sbjct 416213 ACCTTTATGACGGCGTCGGTCTGACGGAGGACGTCAAGCAGTTCCTGCATTACAACGCTA 416154 Query 78975 ACAAGGCGCTGATGAACCTCGGCTACGAAGCACTGTTCCCCAAGGAAGAGACCATGGCAG 79034 ||||||| |||||||| || |||||||| |||||||| || || ||| || || | | Sbjct 416153 ACAAGGCCCTGATGAATCTGGGCTACGAGGCACTGTTTCC---GGCCGAGGCC-TGCCGG 416098 Query 79035 ----ACCCGGCCATCATGTCCGCGCTCTCACCAGGCGGCGACGAGAACCACGACTTCTTC 79090 | ||||| ||| | ||||||||||| || | ||||| ||||||||||||||| Sbjct 416097 GTCAATCCGGCGATCCTCTCCGCGCTCTCGCCCAATGCTGACGAAAACCACGACTTCTTC 416038 Query 79091 TCCGGGTCGGGCTCGAGCTACGTCATCGGCAAAGCTGAAGCCACGGCAGATGAGGACTGG 79150 ||||| || |||||| ||| ||||| ||||| || | ||||| | || ||||||||| Sbjct 416037 TCCGGTTCCGGCTCGTCCTATGTCATTGGCAAGGCGGTCGCCACCGAGGACGAGGACTGG 415978 Query 79151 GACTTCTGA 79159 || |||||| Sbjct 415977 GATTTCTGA 415969 >seq9463 Length=63583 Score = 145 bits (160), Expect = 5e-30 Identities = 118/142 (83%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 45294 CTGCCGTTCATCCATCCGCACGTGGCGCTGATGCCGGATGCTCACAGCGGCAAGGGGTCC 45353 |||||||||||||| |||||||||| ||||||| || | ||| | |||| ||| || Sbjct 40943 CTGCCGTTCATCCACAAGCACGTGGCGGTGATGCCCGACGTGCACTGGGGCATGGGCGCC 40884 Query 45354 GCGGTCGGCACTGTGATCCCGACCGTCGATGCGGTGATCCCCGCGGCGGTCGGCGTCGAC 45413 | |||||| | || ||||||||||||| ||| | ||||| |||||||||||||||||| Sbjct 40883 ACCGTCGGCTCGGTCATCCCGACCGTCGGGGCGATCATCCCGGCGGCGGTCGGCGTCGAC 40824 Query 45414 ATCGGCTGCGGCATGATCGGCG 45435 ||||||||||||||||| |||| Sbjct 40823 ATCGGCTGCGGCATGAT-GGCG 40803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299266665039062