Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_030936.1 Length=93843 Score E Sequences producing significant alignments: (Bits) Value seq9463 109 3e-19 >seq9463 Length=63583 Score = 109 bits (120), Expect = 3e-19 Identities = 237/342 (69%), Gaps = 22/342 (6%) Strand=Plus/Minus Query 48395 AATTGTCACCACAACTACACCGAGCGGGTCGAG-ATCGC--CGGCAAGAAAGTGTGGCTC 48451 || || |||||||||||| || ||||| || ||| | |||||||| |||| || Sbjct 40229 AACTGCCACCACAACTACGTCGCGCGGG---AGCATCACTTCGGCAAGACGGTGTTCGTC 40173 Query 48452 ACGCGCAAGGGTGCAATCGACGCAAGCGAGGGTCGATATGGAC-TGATCCCCGGATCCAT 48510 || |||||||| || | || ||||||| ||| ||| | | |||||||| || || Sbjct 40172 ACCCGCAAGGGGGCGGTGCGGGCCGGCGAGGG-CGAACTGGGCATCATCCCCGGCTCGAT 40114 Query 48511 GGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAATGAGTCCGGCCTCTTCTCTGCGCC 48570 |||| || || | |||| |||||||| ||||| | ||| ||| | ||||| || Sbjct 40113 GGGCGCCCGCTCGTTCATCGTGCGCGGCAAGGGGAACG----CGGACTCGT-TCTGCACC 40059 Query 48571 C-----CATGGTGCCGGTCGTCAGTATTCGC-GCACCCAGGCCAAGAAGCTGTTCACCCT 48624 || || ||||| || | || || ||| | |||||||| || ||||| | Sbjct 40058 TGCTCGCACGGCGCCGGCCGGGCG-ATGAGCCGCAACGAGGCCAAGCGGCGCTTCACGGT 40000 Query 48625 GGATGACCTCG-CCGACCGAATGAAGGGCATCGAATACCGCCACGGCGAAGAGTGGATCG 48683 ||| |||| || ||| | | || |||| |||||| |||| | | || ||| ||||| Sbjct 39999 GGAGGACCACGTCCGCGCCACCGA-GGGCGTCGAATGCCGCAAGGACGCCGAGGTGATCG 39941 Query 48684 ACGAGATCCCGGACGCCTACAAGGACATCGACCAGGTGATGG 48725 |||| | ||| |||||||||||||||||| ||||||| Sbjct 39940 ACGAAACGCCGATGGCCTACAAGGACATCGACGCCGTGATGG 39899 Score = 104 bits (114), Expect = 1e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 47663 CTGCCGTTCATCCATCCTCACGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCT 47722 |||||||||||||| ||||| || | ||||| || | ||| | |||| || | Sbjct 40943 CTGCCGTTCATCCACAAGCACGTGGCGGTGATGCCCGACGTGCACTGGGGCATGGGCGCC 40884 Query 47723 GCCGTCGGCACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGAC 47782 |||||||| |||| || || || || | || | |||||||| ||||||||||| ||| Sbjct 40883 ACCGTCGGCTCGGTCATCCCGACCGTCGGGGCGATCATCCCGGCGGCGGTCGGCGTCGAC 40824 Query 47783 ATCGGCTGCGGCATGATCGGCGTGGAGACCTGGGTCC 47819 ||||||||||||||||| | ||| ||||| | ||| Sbjct 40823 ATCGGCTGCGGCATGATGGCGGTGTGGACCTCGATCC 40787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300117708816996