Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq2561 165 2e-36 seq7272 147 5e-31 seq7832 95.1 3e-15 seq5395 87.8 4e-13 seq10881 86.0 1e-12 seq728 86.0 1e-12 >seq2561 Length=1004 Score = 165 bits (182), Expect = 2e-36 Identities = 176/234 (75%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 702 CCACCGGTGAAAAGGCAGGTCCTAACCCAGTCGTGTGACAGTCAGGGAACGTGGTAAGCC 761 |||||||||||||||| | ||||| ||| ||||| || | | ||||| ||||| || Sbjct 399 CCACCGGTGAAAAGGCGGAACCTAAACCATTCGTGCGAACGACGCGGAACACGGTAAACC 458 Query 762 CGTATCGCCGCCCTCGGGGCAGGGGAGCCGTAAGGCGAACTGTTGGCGGTGCGGGTATGG 821 |||||||| |||||||||||||| ||| |||| ||||||| |||||||| |||| Sbjct 459 CGTATCGCTGCCCTCGGGGCAGGCCGACCGCAAGGAAGGCTGTTGGTGGTGCGGGCATGG 518 Query 822 GATCGCAGAGAAAGCGAACGCCAGGCTGTAATCGTCTGGATAGGGGTTG----------G 871 || || ||||||||||| ||| |||||| | ||||||| ||||| Sbjct 519 GAGTGCGGAGAAAGCGAAGGCCGTCCTGTAACGGGGTGGATAGAGGTTGCGTCGCAAGAC 578 Query 872 AACATCACCCCACGGGAAACCGGGCAGACTTCTGCGTGGTCTTTCGTCGCAAGA 925 |||||||| |||| |||| |||||||||||| || |||||| ||||| | ||| Sbjct 579 AACATCACTTCACGCGAAAGCGGGCAGACTTCCGCATGGTCTCTCGTCACGAGA 632 >seq7272 Length=98981 Score = 147 bits (162), Expect = 5e-31 Identities = 564/868 (65%), Gaps = 56/868 (6%) Strand=Plus/Minus Query 12321 CTCCAGGATTCGGAACTTGCCGCCCGGCTCCAGGGGCGGGGCAA---CGACAACGCACGT 12377 |||||| || ||||||||||||||||||| |||||||| | | |||| || || Sbjct 41937 CTCCAGCATGCGGAACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTACAAGGCCCGC 41878 Query 12378 CGCGTCGTCGCGGGTTCGACTGGGGTCATACCCGAGCCAGACCGGGCGGTTGTCGAA-CG 12436 || |||| | || | ||||||||||| || | |||||| |||| ||| | || || Sbjct 41877 CGAGTCGCCC---GTATGGCTGGGGTCATAGCCAATCCAGAC-GGGCTTTTGGCCAAACG 41822 Query 12437 GCCGCGGGCTGTCCGGGTCGTAGTCGGTCCATAGGCCCAAG---TCGGAATAGCAGCGCT 12493 ||||| || || | | | ||| |||| || || || | || ||||||| Sbjct 41821 GCCGCAACGTGAAGGGCTTGAAATCGCTCCACGCATCCCAGCTGTCCGCATGGCAGCGCA 41762 Query 12494 CCAGGTCGGCCAAGGCGAATGCAGCCTGGGTGCTGTCGATGAACTTGCACATGAACAGCT 12553 ||| || || | ||| |||| |||| |||| ||| |||||||| ||| | Sbjct 41761 TCAGCGTGGACAGCGGGAAAACAGCGAAGGTGTCATCGACAAACCCGCACATGAGCAGGT 41702 Query 12554 GTTCGAAGCGCTCTTCGTCGTACTCCAGCTGCAGGCGCTCCAGGTCGAACAGGTTGCAGC 12613 || | ||| || ||||| | |||| || ||||||||||| ||||||| Sbjct 41701 TGTCCCATTCCTCGTCCGAATACTCGAAGCGCAGTTCGTCAAGGTCGAACAGATTGCAGC 41642 Query 12614 CGCCGGCGATG-GCGTCTTGAATCGTGATGACCTTGCGCCACTGCCCGTCCGGGCAC--- 12669 ||||| || || || || | | ||||| | || ||||| | |||| || Sbjct 41641 CGCCG-CGCTGCGCATCCAGCACCGTGACAATCTGCCGCCATATCTTGTCCTCGCCGGTG 41583 Query 12670 AACGCGCCGGCGTGGATCTGCGCTTCGCT--GGGCCACGGCC---CGG-CCTTCTTTCCG 12723 || | || || || |||| | ||| || ||| | ||| |||| || || Sbjct 41582 AAGCCTCCAGCCAGG---TGCGAATGGCTCAGGTCCAGCTCTATGCGGTCCTTTTTGGCG 41526 Query 12724 CGCTTGCTGTTGCGGAACTCCTCGCCGGTCCAGTACGGATATGCCTGGTGCGTTACCGCG 12783 ||||| ||||| | || ||| |||| || ||| ||||||||| | | Sbjct 41525 CGCTTCTTGTTGATGCGTTCGGCGC---TCCACAGCGCATAGGCCTGGTGCTGCAGGCTG 41469 Query 12784 CTGGGCGTGGAGAAGTAGGTCAGGCGCCACTTTGCATGCGA--GGCCATCGCGCTGGCCA 12841 ||||||||||| || ||| |||||| | || || | |||||| ||||||||| Sbjct 41468 CTGGGCGTGGAAAACAGCGTCTTGCGCCAAT--GCTTGTGGATGGCCATACCGCTGGCCA 41411 Query 12842 CCGTCTGCAGCTTCTGGAAATTGGGGATCCAGAACACTTCGTCGATGTAGACGTGGCCGT 12901 || || ||||| | ||| ||| || ||| || | ||| |||| |||| | ||||| Sbjct 41410 CCTTCCACAGCTCCGTGAAGTTGTTGACCCAAAAGAATTCATCGAAATAGAGATTGCCGT 41351 Query 12902 GGTAGCTCTGCGCCGTGTTGCTGTTCGT--CGAGAGAAACCGCAGTTCCGCCCACGGCTT 12959 |||| |||||| ||| | | |||| | || |||| || || | Sbjct 41350 GGTACGACTGCGCGGTGCGGGCGCTCGTGCCCAG-GAAAT-------------ACAGCGT 41305 Query 12960 GCCGTCTTTGCTCAAGATGATGGGATTGCCGGACAGCTCGATATCGAACCATTGCGC--- 13016 | || | ||||||| || |||||| | ||| || ||||||||| || ||| | Sbjct 41304 GGCGCCATTGCTCAGGACGATGGGGTCGCCCTTCAAATCGATATCG---CAATGCTCCTT 41248 Query 13017 GGCGAAGGCGACGATGTAGCTGC-GGAACACTTCGGACTGGGCGCGGCTCGCGGACAGGA 13075 ||| || |||| |||||| |||| |||| || | || ||| || ||||| || || || | Sbjct 41247 GGCAAACGCGATGATGTA-CTGCCGGAAAACATGGGCCTGCGCACGGCTGGCCGAAAGAA 41189 Query 13076 AAATCTGGTTGTCCCCGGTCAGCACTGCGTCCATGAACGCTTCGGCGGCGAAGTAGTAGG 13135 ||||||| ||| || ||| || || || || | || ||| | ||||||| | | Sbjct 41188 AAATCTGATTGCGGCCCGTCTTCAGGGCATCAATCAGGGCCTCGCGGCCGAAGTACCACG 41129 Query 13136 TCAGCCCGATCTGGCGCGACTTCAGGAT 13163 | ||||||||||||||| || || || Sbjct 41128 TTGCCCCGATCTGGCGCGATTTGAGAAT 41101 >seq7832 Length=242706 Score = 95.1 bits (104), Expect = 3e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 2854 GGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCGAG 2913 |||||| ||||||||| ||||||||||| ||||||||||||| ||||||| | |||| || Sbjct 201286 GGGCCTGTAGCTCAGTTGGTTAGAGCAGCGGACTCATAATCCGTTGGTCCCCAGTTCAAG 201227 Query 2914 TCCGTGTGGGCCCACCA 2930 || | | |||||||||| Sbjct 201226 TCTGGGCGGGCCCACCA 201210 >seq5395 Length=553 Score = 87.8 bits (96), Expect = 4e-13 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 2850 CTGGGGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTC 2902 ||| |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 497 CTGAGGGCCTATAGCTCAGTTGGTTAGAGCAGAGGACTCATAATCCTTTGGTC 549 >seq10881 Length=12096 Score = 86.0 bits (94), Expect = 1e-12 Identities = 288/439 (66%), Gaps = 21/439 (5%) Strand=Plus/Plus Query 1624 TGGAGGCGGACATACAAGGGTGTTTTGACCACATCAATCATGACTGGCTACTGAACCATG 1683 |||| | ||| || |||| || || ||| |||||| ||| |||||||| |||| || | Sbjct 2439 TGGAAGGGGATATCAAAGGCTGCTTCGACAACATCAGTCACGACTGGCTGATGAAACACG 2498 Query 1684 TCCCCACGGACAAGGTGATCCTCCGGAAATGGTTGAAGGCCGGCGTGATCCACAAAGGCC 1743 | || | ||| | | || | | ||| |||| || ||| | || | | | Sbjct 2499 TACCAATTGACCGGCATGTGCTGTCGCAGTGGCTGAAAGCAGGCTTCATGGAAGACCGTA 2558 Query 1744 AGCTCCAGGCAACGGATGCTGGAACACCTCAAGGCGGAATCATCTCGCCTACTTTGGCAA 1803 || | | ||||| || || ||||| || ||||||||||| || || | |||| Sbjct 2559 AGTTGTTTCCGACGGACGCGGGTACACCACAGGGCGGAATCATTTCCCCCGTGCTCGCAA 2618 Query 1804 ACATGGTGCTCGATGGCCTGGAATCACAGCTCAAGCGACACCTGGGCGTGACAAGGGCGA 1863 |||| || || || || ||| | ||||| ||| || || | || | | Sbjct 2619 ACATTGTCCTTGACGGATTGGGC---CGGCTCAT-CGA----TGCGC-TCCCACGCCGCA 2669 Query 1864 AGAAGCTGAAACTCAATGTGGTGCGCTATGCGGACGACTTCGTCATCACCGGTGTCTCTC 1923 | ||| || |||| | || ||||| || |||||||| |||||||| || | |||| Sbjct 2670 ACAAG-TGCAACT-----TCGTCCGCTACGCAGACGACTTTGTCATCACAGGAGCCTCTG 2723 Query 1924 CCGAGGTACTGGA--GAAAGAAGTCAAACCCTGGGTAGAGCAGTTCCTGGCGGTACGCGG 1981 | ||| | ||||| | ||| ||||| || || | ||||||| || | | | || Sbjct 2724 CGGAGATCCTGGAACGCAAG--GTCAAGCCGATCGTCGTCAAGTTCCTCGCAGAAAGAGG 2781 Query 1982 GCTGCAGCTCTCTCTGGAGAAA-ACGCGGATCGCCCACATAGATCAGGGCTTCGACTTCC 2040 ||| |||||| | || || ||| |||| | ||||| || | |||||||||||| Sbjct 2782 GCTCACGCTCTC-CGAAAGCAAGACGAAGATCACACACATGGACGAAGGCTTCGACTTCT 2840 Query 2041 TCGGTTGGAACTTCCGCAA 2059 | || ||||||||||| || Sbjct 2841 TGGGATGGAACTTCCGGAA 2859 >seq728 Length=7478 Score = 86.0 bits (94), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 2854 GGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCGAG 2913 |||||||||||||| |||||||||||| ||||||||||||| ||||| ||||||| Sbjct 5962 GGGCCTATAGCTCAA-CGGTTAGAGCAGGGGACTCATAATCCCTTGGTTTCAGGTTCGAA 6020 Query 2914 TCCGTGTGGGCCCACCA 2930 ||| |||||||||||| Sbjct 6021 TCCTGGTGGGCCCACCA 6037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104298145483042