Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_030940.1
Length=32637
Score E
Sequences producing significant alignments: (Bits) Value
seq2561 165 2e-36
seq7272 147 5e-31
seq7832 95.1 3e-15
seq5395 87.8 4e-13
seq10881 86.0 1e-12
seq728 86.0 1e-12
>seq2561
Length=1004
Score = 165 bits (182), Expect = 2e-36
Identities = 176/234 (75%), Gaps = 10/234 (4%)
Strand=Plus/Plus
Query 702 CCACCGGTGAAAAGGCAGGTCCTAACCCAGTCGTGTGACAGTCAGGGAACGTGGTAAGCC 761
|||||||||||||||| | ||||| ||| ||||| || | | ||||| ||||| ||
Sbjct 399 CCACCGGTGAAAAGGCGGAACCTAAACCATTCGTGCGAACGACGCGGAACACGGTAAACC 458
Query 762 CGTATCGCCGCCCTCGGGGCAGGGGAGCCGTAAGGCGAACTGTTGGCGGTGCGGGTATGG 821
|||||||| |||||||||||||| ||| |||| ||||||| |||||||| ||||
Sbjct 459 CGTATCGCTGCCCTCGGGGCAGGCCGACCGCAAGGAAGGCTGTTGGTGGTGCGGGCATGG 518
Query 822 GATCGCAGAGAAAGCGAACGCCAGGCTGTAATCGTCTGGATAGGGGTTG----------G 871
|| || ||||||||||| ||| |||||| | ||||||| |||||
Sbjct 519 GAGTGCGGAGAAAGCGAAGGCCGTCCTGTAACGGGGTGGATAGAGGTTGCGTCGCAAGAC 578
Query 872 AACATCACCCCACGGGAAACCGGGCAGACTTCTGCGTGGTCTTTCGTCGCAAGA 925
|||||||| |||| |||| |||||||||||| || |||||| ||||| | |||
Sbjct 579 AACATCACTTCACGCGAAAGCGGGCAGACTTCCGCATGGTCTCTCGTCACGAGA 632
>seq7272
Length=98981
Score = 147 bits (162), Expect = 5e-31
Identities = 564/868 (65%), Gaps = 56/868 (6%)
Strand=Plus/Minus
Query 12321 CTCCAGGATTCGGAACTTGCCGCCCGGCTCCAGGGGCGGGGCAA---CGACAACGCACGT 12377
|||||| || ||||||||||||||||||| |||||||| | | |||| || ||
Sbjct 41937 CTCCAGCATGCGGAACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTACAAGGCCCGC 41878
Query 12378 CGCGTCGTCGCGGGTTCGACTGGGGTCATACCCGAGCCAGACCGGGCGGTTGTCGAA-CG 12436
|| |||| | || | ||||||||||| || | |||||| |||| ||| | || ||
Sbjct 41877 CGAGTCGCCC---GTATGGCTGGGGTCATAGCCAATCCAGAC-GGGCTTTTGGCCAAACG 41822
Query 12437 GCCGCGGGCTGTCCGGGTCGTAGTCGGTCCATAGGCCCAAG---TCGGAATAGCAGCGCT 12493
||||| || || | | | ||| |||| || || || | || |||||||
Sbjct 41821 GCCGCAACGTGAAGGGCTTGAAATCGCTCCACGCATCCCAGCTGTCCGCATGGCAGCGCA 41762
Query 12494 CCAGGTCGGCCAAGGCGAATGCAGCCTGGGTGCTGTCGATGAACTTGCACATGAACAGCT 12553
||| || || | ||| |||| |||| |||| ||| |||||||| ||| |
Sbjct 41761 TCAGCGTGGACAGCGGGAAAACAGCGAAGGTGTCATCGACAAACCCGCACATGAGCAGGT 41702
Query 12554 GTTCGAAGCGCTCTTCGTCGTACTCCAGCTGCAGGCGCTCCAGGTCGAACAGGTTGCAGC 12613
|| | ||| || ||||| | |||| || ||||||||||| |||||||
Sbjct 41701 TGTCCCATTCCTCGTCCGAATACTCGAAGCGCAGTTCGTCAAGGTCGAACAGATTGCAGC 41642
Query 12614 CGCCGGCGATG-GCGTCTTGAATCGTGATGACCTTGCGCCACTGCCCGTCCGGGCAC--- 12669
||||| || || || || | | ||||| | || ||||| | |||| ||
Sbjct 41641 CGCCG-CGCTGCGCATCCAGCACCGTGACAATCTGCCGCCATATCTTGTCCTCGCCGGTG 41583
Query 12670 AACGCGCCGGCGTGGATCTGCGCTTCGCT--GGGCCACGGCC---CGG-CCTTCTTTCCG 12723
|| | || || || |||| | ||| || ||| | ||| |||| || ||
Sbjct 41582 AAGCCTCCAGCCAGG---TGCGAATGGCTCAGGTCCAGCTCTATGCGGTCCTTTTTGGCG 41526
Query 12724 CGCTTGCTGTTGCGGAACTCCTCGCCGGTCCAGTACGGATATGCCTGGTGCGTTACCGCG 12783
||||| ||||| | || ||| |||| || ||| ||||||||| | |
Sbjct 41525 CGCTTCTTGTTGATGCGTTCGGCGC---TCCACAGCGCATAGGCCTGGTGCTGCAGGCTG 41469
Query 12784 CTGGGCGTGGAGAAGTAGGTCAGGCGCCACTTTGCATGCGA--GGCCATCGCGCTGGCCA 12841
||||||||||| || ||| |||||| | || || | |||||| |||||||||
Sbjct 41468 CTGGGCGTGGAAAACAGCGTCTTGCGCCAAT--GCTTGTGGATGGCCATACCGCTGGCCA 41411
Query 12842 CCGTCTGCAGCTTCTGGAAATTGGGGATCCAGAACACTTCGTCGATGTAGACGTGGCCGT 12901
|| || ||||| | ||| ||| || ||| || | ||| |||| |||| | |||||
Sbjct 41410 CCTTCCACAGCTCCGTGAAGTTGTTGACCCAAAAGAATTCATCGAAATAGAGATTGCCGT 41351
Query 12902 GGTAGCTCTGCGCCGTGTTGCTGTTCGT--CGAGAGAAACCGCAGTTCCGCCCACGGCTT 12959
|||| |||||| ||| | | |||| | || |||| || || |
Sbjct 41350 GGTACGACTGCGCGGTGCGGGCGCTCGTGCCCAG-GAAAT-------------ACAGCGT 41305
Query 12960 GCCGTCTTTGCTCAAGATGATGGGATTGCCGGACAGCTCGATATCGAACCATTGCGC--- 13016
| || | ||||||| || |||||| | ||| || ||||||||| || ||| |
Sbjct 41304 GGCGCCATTGCTCAGGACGATGGGGTCGCCCTTCAAATCGATATCG---CAATGCTCCTT 41248
Query 13017 GGCGAAGGCGACGATGTAGCTGC-GGAACACTTCGGACTGGGCGCGGCTCGCGGACAGGA 13075
||| || |||| |||||| |||| |||| || | || ||| || ||||| || || || |
Sbjct 41247 GGCAAACGCGATGATGTA-CTGCCGGAAAACATGGGCCTGCGCACGGCTGGCCGAAAGAA 41189
Query 13076 AAATCTGGTTGTCCCCGGTCAGCACTGCGTCCATGAACGCTTCGGCGGCGAAGTAGTAGG 13135
||||||| ||| || ||| || || || || | || ||| | ||||||| | |
Sbjct 41188 AAATCTGATTGCGGCCCGTCTTCAGGGCATCAATCAGGGCCTCGCGGCCGAAGTACCACG 41129
Query 13136 TCAGCCCGATCTGGCGCGACTTCAGGAT 13163
| ||||||||||||||| || || ||
Sbjct 41128 TTGCCCCGATCTGGCGCGATTTGAGAAT 41101
>seq7832
Length=242706
Score = 95.1 bits (104), Expect = 3e-15
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 2854 GGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCGAG 2913
|||||| ||||||||| ||||||||||| ||||||||||||| ||||||| | |||| ||
Sbjct 201286 GGGCCTGTAGCTCAGTTGGTTAGAGCAGCGGACTCATAATCCGTTGGTCCCCAGTTCAAG 201227
Query 2914 TCCGTGTGGGCCCACCA 2930
|| | | ||||||||||
Sbjct 201226 TCTGGGCGGGCCCACCA 201210
>seq5395
Length=553
Score = 87.8 bits (96), Expect = 4e-13
Identities = 51/53 (96%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 2850 CTGGGGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTC 2902
||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 497 CTGAGGGCCTATAGCTCAGTTGGTTAGAGCAGAGGACTCATAATCCTTTGGTC 549
>seq10881
Length=12096
Score = 86.0 bits (94), Expect = 1e-12
Identities = 288/439 (66%), Gaps = 21/439 (5%)
Strand=Plus/Plus
Query 1624 TGGAGGCGGACATACAAGGGTGTTTTGACCACATCAATCATGACTGGCTACTGAACCATG 1683
|||| | ||| || |||| || || ||| |||||| ||| |||||||| |||| || |
Sbjct 2439 TGGAAGGGGATATCAAAGGCTGCTTCGACAACATCAGTCACGACTGGCTGATGAAACACG 2498
Query 1684 TCCCCACGGACAAGGTGATCCTCCGGAAATGGTTGAAGGCCGGCGTGATCCACAAAGGCC 1743
| || | ||| | | || | | ||| |||| || ||| | || | | |
Sbjct 2499 TACCAATTGACCGGCATGTGCTGTCGCAGTGGCTGAAAGCAGGCTTCATGGAAGACCGTA 2558
Query 1744 AGCTCCAGGCAACGGATGCTGGAACACCTCAAGGCGGAATCATCTCGCCTACTTTGGCAA 1803
|| | | ||||| || || ||||| || ||||||||||| || || | ||||
Sbjct 2559 AGTTGTTTCCGACGGACGCGGGTACACCACAGGGCGGAATCATTTCCCCCGTGCTCGCAA 2618
Query 1804 ACATGGTGCTCGATGGCCTGGAATCACAGCTCAAGCGACACCTGGGCGTGACAAGGGCGA 1863
|||| || || || || ||| | ||||| ||| || || | || | |
Sbjct 2619 ACATTGTCCTTGACGGATTGGGC---CGGCTCAT-CGA----TGCGC-TCCCACGCCGCA 2669
Query 1864 AGAAGCTGAAACTCAATGTGGTGCGCTATGCGGACGACTTCGTCATCACCGGTGTCTCTC 1923
| ||| || |||| | || ||||| || |||||||| |||||||| || | ||||
Sbjct 2670 ACAAG-TGCAACT-----TCGTCCGCTACGCAGACGACTTTGTCATCACAGGAGCCTCTG 2723
Query 1924 CCGAGGTACTGGA--GAAAGAAGTCAAACCCTGGGTAGAGCAGTTCCTGGCGGTACGCGG 1981
| ||| | ||||| | ||| ||||| || || | ||||||| || | | | ||
Sbjct 2724 CGGAGATCCTGGAACGCAAG--GTCAAGCCGATCGTCGTCAAGTTCCTCGCAGAAAGAGG 2781
Query 1982 GCTGCAGCTCTCTCTGGAGAAA-ACGCGGATCGCCCACATAGATCAGGGCTTCGACTTCC 2040
||| |||||| | || || ||| |||| | ||||| || | ||||||||||||
Sbjct 2782 GCTCACGCTCTC-CGAAAGCAAGACGAAGATCACACACATGGACGAAGGCTTCGACTTCT 2840
Query 2041 TCGGTTGGAACTTCCGCAA 2059
| || ||||||||||| ||
Sbjct 2841 TGGGATGGAACTTCCGGAA 2859
>seq728
Length=7478
Score = 86.0 bits (94), Expect = 1e-12
Identities = 66/77 (86%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 2854 GGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCGAG 2913
|||||||||||||| |||||||||||| ||||||||||||| ||||| |||||||
Sbjct 5962 GGGCCTATAGCTCAA-CGGTTAGAGCAGGGGACTCATAATCCCTTGGTTTCAGGTTCGAA 6020
Query 2914 TCCGTGTGGGCCCACCA 2930
||| ||||||||||||
Sbjct 6021 TCCTGGTGGGCCCACCA 6037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 104298145483042
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |