Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031007.1
Length=223935
Score E
Sequences producing significant alignments: (Bits) Value
seq10734 140 5e-28
seq9538 134 2e-26
seq7053 132 7e-26
seq9470 118 2e-21
seq6415 113 6e-20
seq11739 95.1 2e-14
seq9639 89.7 7e-13
>seq10734
Length=9239
Score = 140 bits (154), Expect = 5e-28
Identities = 153/201 (76%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 99242 CAGATGCGTTTCAATCTGCAAGAAGGCTTTCCGCTGGTAACGACTAAG-CGCTGTCACAT 99300
|||||||||||||| ||| |||||||| |||||||| || || ||| |||| ||| |
Sbjct 1315 CAGATGCGTTTCAACCTGGCCGAAGGCTTCCCGCTGGTCACCACCAAGAAGCTG-CACCT 1373
Query 99301 GCGTTCGATTATTCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTT 99360
||| ||||| || ||||| ||||||||||||||||| ||||| ||||| || || |
Sbjct 1374 GCGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCT 1433
Query 99361 AAATGATAATGGTGTAACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACC 99420
|| || || ||| || |||||||| ||| || | ||||||||||||| ||
Sbjct 1434 GAAGGACAACCAGGTACGGATCTGGGACGAGTGGGCCGACGACAATGGCGACCTCGGCCC 1493
Query 99421 GGTATACGGTAAACAGTGGCG 99441
||| ||||| || ||||||||
Sbjct 1494 GGTCTACGGCAAGCAGTGGCG 1514
>seq9538
Length=646221
Score = 134 bits (148), Expect = 2e-26
Identities = 183/251 (73%), Gaps = 6/251 (2%)
Strand=Plus/Plus
Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAA 99262
||||| || || ||||| || | || | ||||| | |||||||||||| |||||
Sbjct 486501 GACCGCACCGGCACCGGCACACGCTCGGTGTTCGGCTATCAGATGCGTTTCGATCTGGCC 486560
Query 99263 GAAGGCTTTCCGCTGGTAACGACTAAG-CGCTGTCACATGCGTTCGATTATTCACGAACT 99321
|| ||||| ||| || | || || ||| ||| ||| || ||||| || ||||||||
Sbjct 486561 GACGGCTTCCCGGTGCTTACCACCAAGAAACTG-CACCTGAAGTCGATCATCCACGAACT 486619
Query 99322 GCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTAT 99381
|||||||| ||| ||||||||||| |||||||| | || || | || || || ||
Sbjct 486620 TCTGTGGTTTCTGGCCGGCGATACCAACATCAAATATCTGAACGACCACGGCGTCACCAT 486679
Query 99382 TTGGGACGAATGGAAGAA--CAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGG 99439
|||||||| ||| | | | ||| ||||| ||||| ||||| || || || ||||||
Sbjct 486680 CTGGGACGAGTGGGCGGATGCCAAG--GGCGATCTCGGCCCGGTCTATGGCAAGCAGTGG 486737
Query 99440 CGGTCTTGGCC 99450
|| || |||||
Sbjct 486738 CGCTCCTGGCC 486748
>seq7053
Length=464797
Score = 132 bits (146), Expect = 7e-26
Identities = 181/250 (72%), Gaps = 2/250 (1%)
Strand=Plus/Minus
Query 99202 AGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCA 99261
|||||| || || || ||||| | || | ||||| |||||||||| ||| | ||
Sbjct 70841 AGACCGCACCGGCACGGGTACGCGCTCGGTCTTCGGTTACCAGATGCGCTTCGACCTTTC 70782
Query 99262 AGAAGGCTTTCCGCTGGTAACGACTAAGC-GCTGTCACATGCGTTCGATTATTCACGAAC 99320
||||| |||||| | | || || ||| |||| || |||| || || || || |||
Sbjct 70781 CGAAGGTTTTCCGGTTCTCACCACCAAGAAGCTG-CATCTGCGCTCCATCATCCATGAAT 70723
Query 99321 TGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTA 99380
|||||||||||||||| |||||||||||| || ||| | || || || || || | |
Sbjct 70722 TGCTGTGGTTCCTGAAGGGCGATACCAATATCGCCTATCTCAAGGAAAACGGCGTTTCCA 70663
Query 99381 TTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGGC 99440
| |||||||||||| || | | ||||| ||||| ||||| || ||| |||||||
Sbjct 70662 TCTGGGACGAATGGGCCGACGAGAACGGCGATCTCGGCCCGGTCTATGGTGCGCAGTGGC 70603
Query 99441 GGTCTTGGCC 99450
| || |||||
Sbjct 70602 GTTCCTGGCC 70593
>seq9470
Length=127963
Score = 118 bits (130), Expect = 2e-21
Identities = 176/247 (71%), Gaps = 2/247 (1%)
Strand=Plus/Minus
Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAA 99262
||||| || || ||||| |||||| | ||||| | ||||||||| ||| | |||
Sbjct 53204 GACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGCCGCCAGATGCGCTTCGACCTGGCG 53145
Query 99263 GAAGGCTTTCCGCTGGTAACGACTAAGC-GCTGTCACATGCGTTCGATTATTCACGAACT 99321
|||||||||||| | || || ||| |||| ||| |||| ||||| || ||| ||
Sbjct 53144 CGGGGCTTTCCGCTGCTGACCACCAAGAAGCTG-CACCTGCGCTCGATCATCGTCGAGCT 53086
Query 99322 GCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTAT 99381
|||||||||||| ||||| ||||| || | | || || || || || | ||
Sbjct 53085 TCTGTGGTTCCTGCGCGGCGAGACCAACATCGCCTGGCTGAAGGACAACGGGGTCAGCAT 53026
Query 99382 TTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGGCG 99441
|||||||||||| || || ||||| ||||| ||||| ||||| || ||||||||
Sbjct 53025 CTGGGACGAATGGGCCGACGCCGAGGGCGAGCTCGGTCCGGTCTACGGCAAGCAGTGGCG 52966
Query 99442 GTCTTGG 99448
|| |||
Sbjct 52965 CTCGTGG 52959
>seq6415
Length=247467
Score = 113 bits (124), Expect = 6e-20
Identities = 177/249 (71%), Gaps = 6/249 (2%)
Strand=Plus/Plus
Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTG--C 99260
||||| ||||| ||||| || ||| | ||||| | ||||| || ||| ||||| |
Sbjct 52969 GACCGCACGGGCACCGGCACGCTGGGCGTGTTCGGCCGGCAGATCCGCTTCGATCTGGCC 53028
Query 99261 AAGAAGGCTTTCCGCTGGTAACGACTAAGC-GCTGTCACATGCGTTCGATTATTCACGAA 99319
||| ||||| ||| | | || | ||| |||| ||| |||| ||||| || |||
Sbjct 53029 AAG--GGCTTCCCGGTTCTGACCTCCAAGAAGCTG-CACCTGCGCTCGATCATCATCGAG 53085
Query 99320 CTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACT 99379
||||||||||||||||| ||||| ||||| || || | || || || || ||
Sbjct 53086 CTGCTGTGGTTCCTGAAGGGCGACACCAACATCGCCTACCTCAAGGACAACGGCGTGCGC 53145
Query 99380 ATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGG 99439
|| |||||||| ||| || || | ||||| || || ||||| ||||| || ||||||
Sbjct 53146 ATCTGGGACGAGTGGGCCGACGAAAACGGCGATCTTGGCCCGGTCTACGGCAAGCAGTGG 53205
Query 99440 CGGTCTTGG 99448
|| || |||
Sbjct 53206 CGCTCGTGG 53214
Score = 84.2 bits (92), Expect = 3e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 99860 TGTCAGCTTTATCAACGCAGCGCCGATGTGTTCTTAGGGGTGCCGTTTAATATTGCGTCA 99919
|| ||||| ||||||||||||||||| |||||||||||||||||||| || || || ||
Sbjct 53392 TGCCAGCTCTATCAACGCAGCGCCGACGTGTTCTTAGGGGTGCCGTTCAACATCGCCTCC 53451
Query 99920 TACGCTTTGTTGATCC 99935
||||| || ||| ||
Sbjct 53452 TACGCCCTGCTGACCC 53467
>seq11739
Length=237542
Score = 95.1 bits (104), Expect = 2e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAA 99262
|| ||||| || || ||||| | ||| | || || || || |||||||| | || |
Sbjct 9421 GATCGTACTGGTACAGGTACTCGTTCTGTATTTGGTCATCAAATGCGTTTTGACTTGTCA 9362
Query 99263 GAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTATTCACGAACTG 99322
|||| |||||||| |||| ||||| ||| | || || ||| | ||||||
Sbjct 9361 AAAGGGTTTCCGCTACTAACCACTAAAAAAATTCATTTCCGCTCCATTGTGATTGAACTG 9302
Query 99323 CTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTATT 99382
||||||||||| |||||||| ||||| || ||||| | || || ||| || | |||
Sbjct 9301 CTGTGGTTCCTAAAAGGCGACACCAACGTTCAATATCTTAAAGACAATAAAGTTTCGATT 9242
Query 99383 TGGGACGAATGG 99394
||||| ||||||
Sbjct 9241 TGGGATGAATGG 9230
>seq9639
Length=103419
Score = 89.7 bits (98), Expect = 7e-13
Identities = 144/202 (71%), Gaps = 4/202 (2%)
Strand=Plus/Minus
Query 99152 CAGTATCAAGATTTAATGACTCGCGTA-ATGAGCGAAGGCGTGCCGAAGAAAGACCGTAC 99210
||||| ||||||| ||| | || | |||| | |||||| | |||| ||||||||
Sbjct 4345 CAGTACGAAGATTTCATGCGCCATGTGTACGAGC-ACGGCGTGTCCAAGACCGACCGTAC 4287
Query 99211 GGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAAGAAGGCTT 99270
|| || || || | | ||||| ||||||||||| ||| | ||| ||||||||
Sbjct 4286 CGGCACGGGCACGCGCAGCGTGTTCGGCCACCAGATGCGCTTCGACCTGTCCGAAGGCTT 4227
Query 99271 TCCGCTGGTAACGACTAAG-CGCTGTCACATGCGTTCGATTATTCACGAACTGCTGTGGT 99329
||||||||| || || ||| | || ||| | || || || | |||||||||||||
Sbjct 4226 TCCGCTGGTCACCACCAAGAAGGTG-CACCTCAAGTCCATCATCCTGGAACTGCTGTGGT 4168
Query 99330 TCCTGAAAGGCGATACCAATGT 99351
||||| ||||| | ||||||
Sbjct 4167 TCCTGCGCGGCGACAGCAATGT 4146
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716329134607800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |