Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq10734 140 5e-28 seq9538 134 2e-26 seq7053 132 7e-26 seq9470 118 2e-21 seq6415 113 6e-20 seq11739 95.1 2e-14 seq9639 89.7 7e-13 >seq10734 Length=9239 Score = 140 bits (154), Expect = 5e-28 Identities = 153/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 99242 CAGATGCGTTTCAATCTGCAAGAAGGCTTTCCGCTGGTAACGACTAAG-CGCTGTCACAT 99300 |||||||||||||| ||| |||||||| |||||||| || || ||| |||| ||| | Sbjct 1315 CAGATGCGTTTCAACCTGGCCGAAGGCTTCCCGCTGGTCACCACCAAGAAGCTG-CACCT 1373 Query 99301 GCGTTCGATTATTCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTT 99360 ||| ||||| || ||||| ||||||||||||||||| ||||| ||||| || || | Sbjct 1374 GCGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCT 1433 Query 99361 AAATGATAATGGTGTAACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACC 99420 || || || ||| || |||||||| ||| || | ||||||||||||| || Sbjct 1434 GAAGGACAACCAGGTACGGATCTGGGACGAGTGGGCCGACGACAATGGCGACCTCGGCCC 1493 Query 99421 GGTATACGGTAAACAGTGGCG 99441 ||| ||||| || |||||||| Sbjct 1494 GGTCTACGGCAAGCAGTGGCG 1514 >seq9538 Length=646221 Score = 134 bits (148), Expect = 2e-26 Identities = 183/251 (73%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAA 99262 ||||| || || ||||| || | || | ||||| | |||||||||||| ||||| Sbjct 486501 GACCGCACCGGCACCGGCACACGCTCGGTGTTCGGCTATCAGATGCGTTTCGATCTGGCC 486560 Query 99263 GAAGGCTTTCCGCTGGTAACGACTAAG-CGCTGTCACATGCGTTCGATTATTCACGAACT 99321 || ||||| ||| || | || || ||| ||| ||| || ||||| || |||||||| Sbjct 486561 GACGGCTTCCCGGTGCTTACCACCAAGAAACTG-CACCTGAAGTCGATCATCCACGAACT 486619 Query 99322 GCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTAT 99381 |||||||| ||| ||||||||||| |||||||| | || || | || || || || Sbjct 486620 TCTGTGGTTTCTGGCCGGCGATACCAACATCAAATATCTGAACGACCACGGCGTCACCAT 486679 Query 99382 TTGGGACGAATGGAAGAA--CAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGG 99439 |||||||| ||| | | | ||| ||||| ||||| ||||| || || || |||||| Sbjct 486680 CTGGGACGAGTGGGCGGATGCCAAG--GGCGATCTCGGCCCGGTCTATGGCAAGCAGTGG 486737 Query 99440 CGGTCTTGGCC 99450 || || ||||| Sbjct 486738 CGCTCCTGGCC 486748 >seq7053 Length=464797 Score = 132 bits (146), Expect = 7e-26 Identities = 181/250 (72%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 99202 AGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCA 99261 |||||| || || || ||||| | || | ||||| |||||||||| ||| | || Sbjct 70841 AGACCGCACCGGCACGGGTACGCGCTCGGTCTTCGGTTACCAGATGCGCTTCGACCTTTC 70782 Query 99262 AGAAGGCTTTCCGCTGGTAACGACTAAGC-GCTGTCACATGCGTTCGATTATTCACGAAC 99320 ||||| |||||| | | || || ||| |||| || |||| || || || || ||| Sbjct 70781 CGAAGGTTTTCCGGTTCTCACCACCAAGAAGCTG-CATCTGCGCTCCATCATCCATGAAT 70723 Query 99321 TGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTA 99380 |||||||||||||||| |||||||||||| || ||| | || || || || || | | Sbjct 70722 TGCTGTGGTTCCTGAAGGGCGATACCAATATCGCCTATCTCAAGGAAAACGGCGTTTCCA 70663 Query 99381 TTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGGC 99440 | |||||||||||| || | | ||||| ||||| ||||| || ||| ||||||| Sbjct 70662 TCTGGGACGAATGGGCCGACGAGAACGGCGATCTCGGCCCGGTCTATGGTGCGCAGTGGC 70603 Query 99441 GGTCTTGGCC 99450 | || ||||| Sbjct 70602 GTTCCTGGCC 70593 >seq9470 Length=127963 Score = 118 bits (130), Expect = 2e-21 Identities = 176/247 (71%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAA 99262 ||||| || || ||||| |||||| | ||||| | ||||||||| ||| | ||| Sbjct 53204 GACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGCCGCCAGATGCGCTTCGACCTGGCG 53145 Query 99263 GAAGGCTTTCCGCTGGTAACGACTAAGC-GCTGTCACATGCGTTCGATTATTCACGAACT 99321 |||||||||||| | || || ||| |||| ||| |||| ||||| || ||| || Sbjct 53144 CGGGGCTTTCCGCTGCTGACCACCAAGAAGCTG-CACCTGCGCTCGATCATCGTCGAGCT 53086 Query 99322 GCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTAT 99381 |||||||||||| ||||| ||||| || | | || || || || || | || Sbjct 53085 TCTGTGGTTCCTGCGCGGCGAGACCAACATCGCCTGGCTGAAGGACAACGGGGTCAGCAT 53026 Query 99382 TTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGGCG 99441 |||||||||||| || || ||||| ||||| ||||| ||||| || |||||||| Sbjct 53025 CTGGGACGAATGGGCCGACGCCGAGGGCGAGCTCGGTCCGGTCTACGGCAAGCAGTGGCG 52966 Query 99442 GTCTTGG 99448 || ||| Sbjct 52965 CTCGTGG 52959 >seq6415 Length=247467 Score = 113 bits (124), Expect = 6e-20 Identities = 177/249 (71%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTG--C 99260 ||||| ||||| ||||| || ||| | ||||| | ||||| || ||| ||||| | Sbjct 52969 GACCGCACGGGCACCGGCACGCTGGGCGTGTTCGGCCGGCAGATCCGCTTCGATCTGGCC 53028 Query 99261 AAGAAGGCTTTCCGCTGGTAACGACTAAGC-GCTGTCACATGCGTTCGATTATTCACGAA 99319 ||| ||||| ||| | | || | ||| |||| ||| |||| ||||| || ||| Sbjct 53029 AAG--GGCTTCCCGGTTCTGACCTCCAAGAAGCTG-CACCTGCGCTCGATCATCATCGAG 53085 Query 99320 CTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACT 99379 ||||||||||||||||| ||||| ||||| || || | || || || || || Sbjct 53086 CTGCTGTGGTTCCTGAAGGGCGACACCAACATCGCCTACCTCAAGGACAACGGCGTGCGC 53145 Query 99380 ATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGG 99439 || |||||||| ||| || || | ||||| || || ||||| ||||| || |||||| Sbjct 53146 ATCTGGGACGAGTGGGCCGACGAAAACGGCGATCTTGGCCCGGTCTACGGCAAGCAGTGG 53205 Query 99440 CGGTCTTGG 99448 || || ||| Sbjct 53206 CGCTCGTGG 53214 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 99860 TGTCAGCTTTATCAACGCAGCGCCGATGTGTTCTTAGGGGTGCCGTTTAATATTGCGTCA 99919 || ||||| ||||||||||||||||| |||||||||||||||||||| || || || || Sbjct 53392 TGCCAGCTCTATCAACGCAGCGCCGACGTGTTCTTAGGGGTGCCGTTCAACATCGCCTCC 53451 Query 99920 TACGCTTTGTTGATCC 99935 ||||| || ||| || Sbjct 53452 TACGCCCTGCTGACCC 53467 >seq11739 Length=237542 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAA 99262 || ||||| || || ||||| | ||| | || || || || |||||||| | || | Sbjct 9421 GATCGTACTGGTACAGGTACTCGTTCTGTATTTGGTCATCAAATGCGTTTTGACTTGTCA 9362 Query 99263 GAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTATTCACGAACTG 99322 |||| |||||||| |||| ||||| ||| | || || ||| | |||||| Sbjct 9361 AAAGGGTTTCCGCTACTAACCACTAAAAAAATTCATTTCCGCTCCATTGTGATTGAACTG 9302 Query 99323 CTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTATT 99382 ||||||||||| |||||||| ||||| || ||||| | || || ||| || | ||| Sbjct 9301 CTGTGGTTCCTAAAAGGCGACACCAACGTTCAATATCTTAAAGACAATAAAGTTTCGATT 9242 Query 99383 TGGGACGAATGG 99394 ||||| |||||| Sbjct 9241 TGGGATGAATGG 9230 >seq9639 Length=103419 Score = 89.7 bits (98), Expect = 7e-13 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 99152 CAGTATCAAGATTTAATGACTCGCGTA-ATGAGCGAAGGCGTGCCGAAGAAAGACCGTAC 99210 ||||| ||||||| ||| | || | |||| | |||||| | |||| |||||||| Sbjct 4345 CAGTACGAAGATTTCATGCGCCATGTGTACGAGC-ACGGCGTGTCCAAGACCGACCGTAC 4287 Query 99211 GGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAAGAAGGCTT 99270 || || || || | | ||||| ||||||||||| ||| | ||| |||||||| Sbjct 4286 CGGCACGGGCACGCGCAGCGTGTTCGGCCACCAGATGCGCTTCGACCTGTCCGAAGGCTT 4227 Query 99271 TCCGCTGGTAACGACTAAG-CGCTGTCACATGCGTTCGATTATTCACGAACTGCTGTGGT 99329 ||||||||| || || ||| | || ||| | || || || | ||||||||||||| Sbjct 4226 TCCGCTGGTCACCACCAAGAAGGTG-CACCTCAAGTCCATCATCCTGGAACTGCTGTGGT 4168 Query 99330 TCCTGAAAGGCGATACCAATGT 99351 ||||| ||||| | |||||| Sbjct 4167 TCCTGCGCGGCGACAGCAATGT 4146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716329134607800