Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq10734 179 6e-40 seq9538 154 2e-32 seq9639 152 8e-32 seq9470 143 4e-29 seq7053 140 5e-28 seq6415 138 2e-27 seq11739 107 3e-18 seq7278 98.7 2e-15 seq6714 96.9 5e-15 seq11622 95.1 2e-14 seq10564 89.7 8e-13 seq7823 87.8 3e-12 seq9026 86.0 1e-11 seq1205 86.0 1e-11 >seq10734 Length=9239 Score = 179 bits (198), Expect = 6e-40 Identities = 156/194 (80%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 || || |||||||||||||| ||| | |||| || |||||||| || ||||| || Sbjct 1276 GATCGCACCGGCACCGGCACCCGCAGCGTGTTTGGCTGGCAGATGCGTTTCAACCTGGCC 1335 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 ||||||||||| ||||| ||||| || ||| | ||||| || || ||||| ||||||||| Sbjct 1336 GAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCATCCACGAGCTG 1395 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 |||||||||||||| || |||||||||||| | |||||||| || ||| ||| ||| Sbjct 1396 CTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTGAAGGACAACCAGGTACGGATC 1455 Query 202729 TGGGACGAATGGGC 202742 |||||||| ||||| Sbjct 1456 TGGGACGAGTGGGC 1469 >seq9538 Length=646221 Score = 154 bits (170), Expect = 2e-32 Identities = 151/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 ||||| |||||||||||||| ||||| ||||||| |||||||| || || ||| || Sbjct 486501 GACCGCACCGGCACCGGCACACGCTCGGTGTTCGGCTATCAGATGCGTTTCGATCTGGCC 486560 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 || |||||||| || | ||||| || || | ||||| || ||||| ||||| || Sbjct 486561 GACGGCTTCCCGGTGCTTACCACCAAGAAACTGCACCTGAAGTCGATCATCCACGAACTT 486620 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 |||||||| ||| || || |||||||||| || |||||||| |||| ||||| ||| Sbjct 486621 CTGTGGTTTCTGGCCGGCGATACCAACATCAAATATCTGAACGACCACGGCGTCACCATC 486680 Query 202729 TGGGACGAATGGGCG 202743 |||||||| |||||| Sbjct 486681 TGGGACGAGTGGGCG 486695 >seq9639 Length=103419 Score = 152 bits (168), Expect = 8e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 202543 AAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGAC 202602 |||| |||||||||||||| ||||||||| | ||||||| ||||||||| || ||| Sbjct 4300 AAGACCGACCGTACCGGCACGGGCACGCGCAGCGTGTTCGGCCACCAGATGCGCTTCGAC 4241 Query 202603 CTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCAC 202662 ||| |||||||||| || ||||| ||||| || ||||| |||||| || ||||| | Sbjct 4240 CTGTCCGAAGGCTTTCCGCTGGTCACCACCAAGAAGGTGCACCTCAAGTCCATCATCCTG 4181 Query 202663 GAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTC 202722 || ||||||||||||||| || |||| ||| | | | ||| | || ||| | Sbjct 4180 GAACTGCTGTGGTTCCTGCGCGGCGACAGCAATGTGCGCTGGCTGCAGGAGCGCGGCTGC 4121 Query 202723 ACTATCTGGGACGAATGGGCGCGGGATGA 202751 || ||||||||||||||||| || || || Sbjct 4120 ACCATCTGGGACGAATGGGCCCGCGAGGA 4092 >seq9470 Length=127963 Score = 143 bits (158), Expect = 4e-29 Identities = 148/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 ||||| |||||||||||||| | | | ||||| ||||||||| || |||||| | Sbjct 53204 GACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGCCGCCAGATGCGCTTCGACCTGGCG 53145 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 ||||| || ||| ||||||| || ||| | ||||| || || ||||| |||||| Sbjct 53144 CGGGGCTTTCCGCTGCTGACCACCAAGAAGCTGCACCTGCGCTCGATCATCGTCGAGCTT 53085 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 |||||||||||| || || ||||||||| | ||||| || |||||||||| ||| Sbjct 53084 CTGTGGTTCCTGCGCGGCGAGACCAACATCGCCTGGCTGAAGGACAACGGGGTCAGCATC 53025 Query 202729 TGGGACGAATGGGC 202742 |||||||||||||| Sbjct 53024 TGGGACGAATGGGC 53011 >seq7053 Length=464797 Score = 140 bits (154), Expect = 5e-28 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 202548 AGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGAC 202607 |||||| |||||||| || |||||||| | ||||| ||||||||| || ||||| | Sbjct 70841 AGACCGCACCGGCACGGGTACGCGCTCGGTCTTCGGTTACCAGATGCGCTTCGACCTTTC 70782 Query 202608 CGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCT 202667 |||||| || || | | ||||| || ||| | || || || || ||||| || || | Sbjct 70781 CGAAGGTTTTCCGGTTCTCACCACCAAGAAGCTGCATCTGCGCTCCATCATCCATGAATT 70722 Query 202668 GCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTAT 202727 ||||||||||||||| || || ||||| ||| || || || || ||||| || | || Sbjct 70721 GCTGTGGTTCCTGAAGGGCGATACCAATATCGCCTATCTCAAGGAAAACGGCGTTTCCAT 70662 Query 202728 CTGGGACGAATGGGC 202742 ||||||||||||||| Sbjct 70661 CTGGGACGAATGGGC 70647 Score = 89.7 bits (98), Expect = 8e-13 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 203290 CTATCGTGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATC 203349 || || || ||| | ||||||||| |||||| ||||| | ||||||||||| |||||| Sbjct 70423 CTGTCCTGCCAGCTCTATCAGCGCTCTGCCGATATCTTCCTCGGCGTGCCGTTCAACATC 70364 Query 203350 GCCTCGTATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCA---ACATGGTGGCCGAG 203406 ||||| ||||| | ||||| |||||| || |||||||| | || | | | Sbjct 70363 GCCTCCTATGCGCTGCTGACACTGATGGTGGC---GCAGGTCACGGGCCTGAAGCCGGGT 70307 Query 203407 GAGTTCGTCTGGACAGGCGGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCCGT 203466 || ||||| || ||||| | ||| | ||| |||| ||| | |||||||| || Sbjct 70306 GATTTCGTTCATACGCTGGGTGACGCGCATATCTATGCCAATCATTTCGAGCAGGCGCGG 70247 Query 203467 CTGCAGTTAACTCG 203480 |||||| | || || Sbjct 70246 CTGCAGATGACCCG 70233 >seq6415 Length=247467 Score = 138 bits (152), Expect = 2e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 ||||| || ||||||||||||| | ||||||| ||||| || || || ||| || Sbjct 52969 GACCGCACGGGCACCGGCACGCTGGGCGTGTTCGGCCGGCAGATCCGCTTCGATCTGGCC 53028 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 | |||||||| | ||||| | || ||| | ||||| || || ||||| ||||||| Sbjct 53029 AAGGGCTTCCCGGTTCTGACCTCCAAGAAGCTGCACCTGCGCTCGATCATCATCGAGCTG 53088 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 |||||||||||||| || |||||||||||| ||||| || || ||||| || ||| Sbjct 53089 CTGTGGTTCCTGAAGGGCGACACCAACATCGCCTACCTCAAGGACAACGGCGTGCGCATC 53148 Query 202729 TGGGACGAATGGGC 202742 |||||||| ||||| Sbjct 53149 TGGGACGAGTGGGC 53162 Score = 93.3 bits (102), Expect = 7e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 203296 TGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATCGCCTCG 203355 || ||| | ||||| ||||||||||| || |||||||| |||||||| ||||||||||| Sbjct 53392 TGCCAGCTCTATCAACGCAGCGCCGACGTGTTCTTAGGGGTGCCGTTCAACATCGCCTCC 53451 Query 203356 TATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCAACATGGTGGCCGAGGAGTTCGTC 203415 || || | ||||| |||||| || || ||| | ||| | | | ||||||||| Sbjct 53452 TACGCCCTGCTGACCCTGATGGTCGCCAAGGTCGTCGGCCTGGAGCCGGGCGAGTTCGTC 53511 Query 203416 TGGACAGGCGGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCCGTCTGCAGTTA 203475 || ||| || | || || ||| ||||| || || |||||||| ||| | Sbjct 53512 CACACCTTCGGCGACGCCCACCTCTATCTGAACCACCTCGACCAGGCCCGCGAACAGCTG 53571 Query 203476 ACTCGTGACCCGCACCCATTACCG 203499 || || || || |||| || ||| Sbjct 53572 ACCCGCGAGCCCTACCCGTTCCCG 53595 >seq11739 Length=237542 Score = 107 bits (118), Expect = 3e-18 Identities = 138/187 (74%), Gaps = 10/187 (5%) Strand=Plus/Minus Query 203305 TATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATCGCCTCGTATGCTTTA 203364 ||||| || || || ||||| |||||||| ||||| ||||| || ||| |||||| || Sbjct 8941 TATCAACGTAGTGCAGATGTTTTCTTAGGGGTGCCATTTAATATTGCCAGCTATGCTCTA 8882 Query 203365 CTGACTGAGATGGTTGCTCAGCAGGTCAACATGGT---GGCCGAG--GAGTTCGTCTGGA 203419 |||||| | ||||||||||| || | |||| ||| || || || ||||||| Sbjct 8881 CTGACTCATATGGTTGCTCA--AGTT---TGTGGTTTAGGCGTAGGTGATTTTGTCTGGA 8827 Query 203420 CAGGCGGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCCGTCTGCAGTTAACTC 203479 | ||||||||||||||| | ||| |||||| | || || || || |||||||| | Sbjct 8826 CTGGCGGTGATACACATTTATATGTTAACCATTTTGAACAAGCAAAACTTCAGTTAACAC 8767 Query 203480 GTGACCC 203486 |||| || Sbjct 8766 GTGAGCC 8760 >seq7278 Length=293576 Score = 98.7 bits (108), Expect = 2e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| |||||||||||||| ||||||||| |||||||||||||||||| |||| Sbjct 292068 TGTAGCTCAGTCGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 292009 Query 2770 TCAGTCCTGCCATATCT 2786 ||| || ||||| ||| Sbjct 292008 TCACTCGCGCCATTTCT 291992 Score = 96.9 bits (106), Expect = 5e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| |||||||||||||| ||||||||| |||||||||||||||||| |||| Sbjct 292184 TGTAGCTCAGTCGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 292125 Query 2770 TCAGTCCTGCCAT 2782 ||| || ||||| Sbjct 292124 TCACTCGCGCCAT 292112 >seq6714 Length=1758414 Score = 96.9 bits (106), Expect = 5e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| |||||||||||||| ||||||||| |||||||||||||||||| |||| Sbjct 530136 TGTAGCTCAGTCGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 530195 Query 2770 TCAGTCCTGCCAT 2782 ||| || ||||| Sbjct 530196 TCACTCGCGCCAT 530208 >seq11622 Length=276999 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 2619 TTTTAGGGAAGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGGTTGTTGGAGGTTC 2678 || |||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 84 TTATAGGTCAGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGGGGGTTC 143 Query 2679 GAGTCCTCTCTTCCCTGCCA 2698 |||||| || ||||||| Sbjct 144 GAGTCCCTCCTGACCTGCCA 163 >seq10564 Length=1091 Score = 89.7 bits (98), Expect = 8e-13 Identities = 74/89 (83%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 2256 GGCGGGTTACTCAAGCGGC-AACGAGAGCAGACTGTAAATCTGTTGACTTCGGTCTTCGG 2314 || ||| ||| |||||||| |||| | |||||||||||||||| || ||| | |||||| Sbjct 206 GGAGGGATACCCAAGCGGCCAACGGGGGCAGACTGTAAATCTGCTGGCTTACGCCTTCGG 265 Query 2315 TGGTTCGAGTCCACCACACGCCACCAGTT 2343 |||||||| |||||| | | ||||||||| Sbjct 266 TGGTTCGAATCCACCTCCCTCCACCAGTT 294 >seq7823 Length=199163 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| |||||||| |||| ||||||||| |||||||||||||||||| |||| Sbjct 195853 TGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 195912 Query 2770 TCAGTCCTGCCAT 2782 ||| || ||||| Sbjct 195913 TCACTCGCGCCAT 195925 >seq9026 Length=54586 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| |||||||| |||| ||||||||| |||||||||||||||||| |||| Sbjct 48358 TGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 48417 Query 2770 TCAGTCCTGCCA 2781 ||| || |||| Sbjct 48418 TCATTCGCGCCA 48429 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| |||||||| |||| ||||||||| |||||||||||||||||| |||| Sbjct 48503 TGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 48562 Query 2770 TCAGTCCTGCCA 2781 ||| || |||| Sbjct 48563 TCATTCGCGCCA 48574 >seq1205 Length=48877 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| |||||||| |||| ||||||||| |||||||||||||||||| |||| Sbjct 17285 TGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 17226 Query 2770 TCAGTCCTGCCA 2781 ||| || |||| Sbjct 17225 TCACTCGCGCCA 17214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788171608614000