Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031010.1
Length=246390
Score E
Sequences producing significant alignments: (Bits) Value
seq10734 179 6e-40
seq9538 154 2e-32
seq9639 152 8e-32
seq9470 143 4e-29
seq7053 140 5e-28
seq6415 138 2e-27
seq11739 107 3e-18
seq7278 98.7 2e-15
seq6714 96.9 5e-15
seq11622 95.1 2e-14
seq10564 89.7 8e-13
seq7823 87.8 3e-12
seq9026 86.0 1e-11
seq1205 86.0 1e-11
>seq10734
Length=9239
Score = 179 bits (198), Expect = 6e-40
Identities = 156/194 (80%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608
|| || |||||||||||||| ||| | |||| || |||||||| || ||||| ||
Sbjct 1276 GATCGCACCGGCACCGGCACCCGCAGCGTGTTTGGCTGGCAGATGCGTTTCAACCTGGCC 1335
Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668
||||||||||| ||||| ||||| || ||| | ||||| || || ||||| |||||||||
Sbjct 1336 GAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCATCCACGAGCTG 1395
Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728
|||||||||||||| || |||||||||||| | |||||||| || ||| ||| |||
Sbjct 1396 CTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTGAAGGACAACCAGGTACGGATC 1455
Query 202729 TGGGACGAATGGGC 202742
|||||||| |||||
Sbjct 1456 TGGGACGAGTGGGC 1469
>seq9538
Length=646221
Score = 154 bits (170), Expect = 2e-32
Identities = 151/195 (77%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608
||||| |||||||||||||| ||||| ||||||| |||||||| || || ||| ||
Sbjct 486501 GACCGCACCGGCACCGGCACACGCTCGGTGTTCGGCTATCAGATGCGTTTCGATCTGGCC 486560
Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668
|| |||||||| || | ||||| || || | ||||| || ||||| ||||| ||
Sbjct 486561 GACGGCTTCCCGGTGCTTACCACCAAGAAACTGCACCTGAAGTCGATCATCCACGAACTT 486620
Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728
|||||||| ||| || || |||||||||| || |||||||| |||| ||||| |||
Sbjct 486621 CTGTGGTTTCTGGCCGGCGATACCAACATCAAATATCTGAACGACCACGGCGTCACCATC 486680
Query 202729 TGGGACGAATGGGCG 202743
|||||||| ||||||
Sbjct 486681 TGGGACGAGTGGGCG 486695
>seq9639
Length=103419
Score = 152 bits (168), Expect = 8e-32
Identities = 159/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 202543 AAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGAC 202602
|||| |||||||||||||| ||||||||| | ||||||| ||||||||| || |||
Sbjct 4300 AAGACCGACCGTACCGGCACGGGCACGCGCAGCGTGTTCGGCCACCAGATGCGCTTCGAC 4241
Query 202603 CTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCAC 202662
||| |||||||||| || ||||| ||||| || ||||| |||||| || ||||| |
Sbjct 4240 CTGTCCGAAGGCTTTCCGCTGGTCACCACCAAGAAGGTGCACCTCAAGTCCATCATCCTG 4181
Query 202663 GAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTC 202722
|| ||||||||||||||| || |||| ||| | | | ||| | || ||| |
Sbjct 4180 GAACTGCTGTGGTTCCTGCGCGGCGACAGCAATGTGCGCTGGCTGCAGGAGCGCGGCTGC 4121
Query 202723 ACTATCTGGGACGAATGGGCGCGGGATGA 202751
|| ||||||||||||||||| || || ||
Sbjct 4120 ACCATCTGGGACGAATGGGCCCGCGAGGA 4092
>seq9470
Length=127963
Score = 143 bits (158), Expect = 4e-29
Identities = 148/194 (76%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608
||||| |||||||||||||| | | | ||||| ||||||||| || |||||| |
Sbjct 53204 GACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGCCGCCAGATGCGCTTCGACCTGGCG 53145
Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668
||||| || ||| ||||||| || ||| | ||||| || || ||||| ||||||
Sbjct 53144 CGGGGCTTTCCGCTGCTGACCACCAAGAAGCTGCACCTGCGCTCGATCATCGTCGAGCTT 53085
Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728
|||||||||||| || || ||||||||| | ||||| || |||||||||| |||
Sbjct 53084 CTGTGGTTCCTGCGCGGCGAGACCAACATCGCCTGGCTGAAGGACAACGGGGTCAGCATC 53025
Query 202729 TGGGACGAATGGGC 202742
||||||||||||||
Sbjct 53024 TGGGACGAATGGGC 53011
>seq7053
Length=464797
Score = 140 bits (154), Expect = 5e-28
Identities = 148/195 (76%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 202548 AGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGAC 202607
|||||| |||||||| || |||||||| | ||||| ||||||||| || ||||| |
Sbjct 70841 AGACCGCACCGGCACGGGTACGCGCTCGGTCTTCGGTTACCAGATGCGCTTCGACCTTTC 70782
Query 202608 CGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCT 202667
|||||| || || | | ||||| || ||| | || || || || ||||| || || |
Sbjct 70781 CGAAGGTTTTCCGGTTCTCACCACCAAGAAGCTGCATCTGCGCTCCATCATCCATGAATT 70722
Query 202668 GCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTAT 202727
||||||||||||||| || || ||||| ||| || || || || ||||| || | ||
Sbjct 70721 GCTGTGGTTCCTGAAGGGCGATACCAATATCGCCTATCTCAAGGAAAACGGCGTTTCCAT 70662
Query 202728 CTGGGACGAATGGGC 202742
|||||||||||||||
Sbjct 70661 CTGGGACGAATGGGC 70647
Score = 89.7 bits (98), Expect = 8e-13
Identities = 137/194 (71%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 203290 CTATCGTGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATC 203349
|| || || ||| | ||||||||| |||||| ||||| | ||||||||||| ||||||
Sbjct 70423 CTGTCCTGCCAGCTCTATCAGCGCTCTGCCGATATCTTCCTCGGCGTGCCGTTCAACATC 70364
Query 203350 GCCTCGTATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCA---ACATGGTGGCCGAG 203406
||||| ||||| | ||||| |||||| || |||||||| | || | | |
Sbjct 70363 GCCTCCTATGCGCTGCTGACACTGATGGTGGC---GCAGGTCACGGGCCTGAAGCCGGGT 70307
Query 203407 GAGTTCGTCTGGACAGGCGGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCCGT 203466
|| ||||| || ||||| | ||| | ||| |||| ||| | |||||||| ||
Sbjct 70306 GATTTCGTTCATACGCTGGGTGACGCGCATATCTATGCCAATCATTTCGAGCAGGCGCGG 70247
Query 203467 CTGCAGTTAACTCG 203480
|||||| | || ||
Sbjct 70246 CTGCAGATGACCCG 70233
>seq6415
Length=247467
Score = 138 bits (152), Expect = 2e-27
Identities = 147/194 (76%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608
||||| || ||||||||||||| | ||||||| ||||| || || || ||| ||
Sbjct 52969 GACCGCACGGGCACCGGCACGCTGGGCGTGTTCGGCCGGCAGATCCGCTTCGATCTGGCC 53028
Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668
| |||||||| | ||||| | || ||| | ||||| || || ||||| |||||||
Sbjct 53029 AAGGGCTTCCCGGTTCTGACCTCCAAGAAGCTGCACCTGCGCTCGATCATCATCGAGCTG 53088
Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728
|||||||||||||| || |||||||||||| ||||| || || ||||| || |||
Sbjct 53089 CTGTGGTTCCTGAAGGGCGACACCAACATCGCCTACCTCAAGGACAACGGCGTGCGCATC 53148
Query 202729 TGGGACGAATGGGC 202742
|||||||| |||||
Sbjct 53149 TGGGACGAGTGGGC 53162
Score = 93.3 bits (102), Expect = 7e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 203296 TGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATCGCCTCG 203355
|| ||| | ||||| ||||||||||| || |||||||| |||||||| |||||||||||
Sbjct 53392 TGCCAGCTCTATCAACGCAGCGCCGACGTGTTCTTAGGGGTGCCGTTCAACATCGCCTCC 53451
Query 203356 TATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCAACATGGTGGCCGAGGAGTTCGTC 203415
|| || | ||||| |||||| || || ||| | ||| | | | |||||||||
Sbjct 53452 TACGCCCTGCTGACCCTGATGGTCGCCAAGGTCGTCGGCCTGGAGCCGGGCGAGTTCGTC 53511
Query 203416 TGGACAGGCGGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCCGTCTGCAGTTA 203475
|| ||| || | || || ||| ||||| || || |||||||| ||| |
Sbjct 53512 CACACCTTCGGCGACGCCCACCTCTATCTGAACCACCTCGACCAGGCCCGCGAACAGCTG 53571
Query 203476 ACTCGTGACCCGCACCCATTACCG 203499
|| || || || |||| || |||
Sbjct 53572 ACCCGCGAGCCCTACCCGTTCCCG 53595
>seq11739
Length=237542
Score = 107 bits (118), Expect = 3e-18
Identities = 138/187 (74%), Gaps = 10/187 (5%)
Strand=Plus/Minus
Query 203305 TATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATCGCCTCGTATGCTTTA 203364
||||| || || || ||||| |||||||| ||||| ||||| || ||| |||||| ||
Sbjct 8941 TATCAACGTAGTGCAGATGTTTTCTTAGGGGTGCCATTTAATATTGCCAGCTATGCTCTA 8882
Query 203365 CTGACTGAGATGGTTGCTCAGCAGGTCAACATGGT---GGCCGAG--GAGTTCGTCTGGA 203419
|||||| | ||||||||||| || | |||| ||| || || || |||||||
Sbjct 8881 CTGACTCATATGGTTGCTCA--AGTT---TGTGGTTTAGGCGTAGGTGATTTTGTCTGGA 8827
Query 203420 CAGGCGGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCCGTCTGCAGTTAACTC 203479
| ||||||||||||||| | ||| |||||| | || || || || |||||||| |
Sbjct 8826 CTGGCGGTGATACACATTTATATGTTAACCATTTTGAACAAGCAAAACTTCAGTTAACAC 8767
Query 203480 GTGACCC 203486
|||| ||
Sbjct 8766 GTGAGCC 8760
>seq7278
Length=293576
Score = 98.7 bits (108), Expect = 2e-15
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769
|||||||||| |||||||||||||| ||||||||| |||||||||||||||||| ||||
Sbjct 292068 TGTAGCTCAGTCGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 292009
Query 2770 TCAGTCCTGCCATATCT 2786
||| || ||||| |||
Sbjct 292008 TCACTCGCGCCATTTCT 291992
Score = 96.9 bits (106), Expect = 5e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769
|||||||||| |||||||||||||| ||||||||| |||||||||||||||||| ||||
Sbjct 292184 TGTAGCTCAGTCGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 292125
Query 2770 TCAGTCCTGCCAT 2782
||| || |||||
Sbjct 292124 TCACTCGCGCCAT 292112
>seq6714
Length=1758414
Score = 96.9 bits (106), Expect = 5e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769
|||||||||| |||||||||||||| ||||||||| |||||||||||||||||| ||||
Sbjct 530136 TGTAGCTCAGTCGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 530195
Query 2770 TCAGTCCTGCCAT 2782
||| || |||||
Sbjct 530196 TCACTCGCGCCAT 530208
>seq11622
Length=276999
Score = 95.1 bits (104), Expect = 2e-14
Identities = 69/80 (86%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 2619 TTTTAGGGAAGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGGTTGTTGGAGGTTC 2678
|| |||| ||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 84 TTATAGGTCAGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGGGGGTTC 143
Query 2679 GAGTCCTCTCTTCCCTGCCA 2698
|||||| || |||||||
Sbjct 144 GAGTCCCTCCTGACCTGCCA 163
>seq10564
Length=1091
Score = 89.7 bits (98), Expect = 8e-13
Identities = 74/89 (83%), Gaps = 1/89 (1%)
Strand=Plus/Plus
Query 2256 GGCGGGTTACTCAAGCGGC-AACGAGAGCAGACTGTAAATCTGTTGACTTCGGTCTTCGG 2314
|| ||| ||| |||||||| |||| | |||||||||||||||| || ||| | ||||||
Sbjct 206 GGAGGGATACCCAAGCGGCCAACGGGGGCAGACTGTAAATCTGCTGGCTTACGCCTTCGG 265
Query 2315 TGGTTCGAGTCCACCACACGCCACCAGTT 2343
|||||||| |||||| | | |||||||||
Sbjct 266 TGGTTCGAATCCACCTCCCTCCACCAGTT 294
>seq7823
Length=199163
Score = 87.8 bits (96), Expect = 3e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769
|||||||||| |||||||| |||| ||||||||| |||||||||||||||||| ||||
Sbjct 195853 TGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 195912
Query 2770 TCAGTCCTGCCAT 2782
||| || |||||
Sbjct 195913 TCACTCGCGCCAT 195925
>seq9026
Length=54586
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769
|||||||||| |||||||| |||| ||||||||| |||||||||||||||||| ||||
Sbjct 48358 TGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 48417
Query 2770 TCAGTCCTGCCA 2781
||| || ||||
Sbjct 48418 TCATTCGCGCCA 48429
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769
|||||||||| |||||||| |||| ||||||||| |||||||||||||||||| ||||
Sbjct 48503 TGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 48562
Query 2770 TCAGTCCTGCCA 2781
||| || ||||
Sbjct 48563 TCATTCGCGCCA 48574
>seq1205
Length=48877
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769
|||||||||| |||||||| |||| ||||||||| |||||||||||||||||| ||||
Sbjct 17285 TGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 17226
Query 2770 TCAGTCCTGCCA 2781
||| || ||||
Sbjct 17225 TCACTCGCGCCA 17214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 788171608614000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |