Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq9673 96.9 4e-15 seq8424 96.9 4e-15 seq7041 91.5 2e-13 seq10415 89.7 5e-13 seq8280 86.0 7e-12 >seq9673 Length=4878 Score = 96.9 bits (106), Expect = 4e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 66402 ATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATC 66461 ||||| ||| ||||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct 563 ATGGCGATCCCGACAGGATTCGAACCTGTGACCCACAGCTTAGAAGGCTGTTGCTCTATC 504 Query 66462 CAGCTGAGCTA 66472 ||||||||||| Sbjct 503 CAGCTGAGCTA 493 >seq8424 Length=263062 Score = 96.9 bits (106), Expect = 4e-15 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 66410 CCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAG 66469 ||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 50494 CCCGACAGGATTCGAACCTGTGACCATCGGCTTAGAAGGCCGGTGCTCTATCCAGCTGAG 50435 Query 66470 CTA 66472 ||| Sbjct 50434 CTA 50432 >seq7041 Length=191181 Score = 91.5 bits (100), Expect = 2e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 66410 CCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAG 66469 |||| ||||| ||||||||| ||||||| ||||||||||| |||||||||||||| |||| Sbjct 50835 CCCTGCAGGACTCGAACCTGCGACCTACTGCTTAGAAGGCAGTTGCTCTATCCAGTTGAG 50776 Query 66470 CTAAG 66474 ||||| Sbjct 50775 CTAAG 50771 >seq10415 Length=20837 Score = 89.7 bits (98), Expect = 5e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 66401 AATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTAT 66460 |||||| | ||| |||||| |||||||||| ||| ||||||||||||||| |||||||| Sbjct 5425 AATGGCGCGCCCGACAGGAATCGAACCTGTAACCGCCGGCTTAGAAGGCCGGTGCTCTAT 5366 Query 66461 CCAGCTGAGCTA 66472 |||| ||||||| Sbjct 5365 CCAGTTGAGCTA 5354 >seq8280 Length=144189 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 66403 TGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCC 66462 |||| | |||| ||||| ||||||||| |||| | ||||||||||| | |||||||||| Sbjct 25970 TGGCGCGCCCTGCAGGACTCGAACCTGCGACCGTCCGCTTAGAAGGCGGATGCTCTATCC 26029 Query 66463 AGCTGAGCTAAG 66474 |||||||||||| Sbjct 26030 AGCTGAGCTAAG 26041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522016918340040