Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031020.1
Length=163201
Score E
Sequences producing significant alignments: (Bits) Value
seq9673 96.9 4e-15
seq8424 96.9 4e-15
seq7041 91.5 2e-13
seq10415 89.7 5e-13
seq8280 86.0 7e-12
>seq9673
Length=4878
Score = 96.9 bits (106), Expect = 4e-15
Identities = 64/71 (90%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 66402 ATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATC 66461
||||| ||| ||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 563 ATGGCGATCCCGACAGGATTCGAACCTGTGACCCACAGCTTAGAAGGCTGTTGCTCTATC 504
Query 66462 CAGCTGAGCTA 66472
|||||||||||
Sbjct 503 CAGCTGAGCTA 493
>seq8424
Length=263062
Score = 96.9 bits (106), Expect = 4e-15
Identities = 59/63 (94%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 66410 CCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAG 66469
||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 50494 CCCGACAGGATTCGAACCTGTGACCATCGGCTTAGAAGGCCGGTGCTCTATCCAGCTGAG 50435
Query 66470 CTA 66472
|||
Sbjct 50434 CTA 50432
>seq7041
Length=191181
Score = 91.5 bits (100), Expect = 2e-13
Identities = 59/65 (91%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 66410 CCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAG 66469
|||| ||||| ||||||||| ||||||| ||||||||||| |||||||||||||| ||||
Sbjct 50835 CCCTGCAGGACTCGAACCTGCGACCTACTGCTTAGAAGGCAGTTGCTCTATCCAGTTGAG 50776
Query 66470 CTAAG 66474
|||||
Sbjct 50775 CTAAG 50771
>seq10415
Length=20837
Score = 89.7 bits (98), Expect = 5e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 66401 AATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTAT 66460
|||||| | ||| |||||| |||||||||| ||| ||||||||||||||| ||||||||
Sbjct 5425 AATGGCGCGCCCGACAGGAATCGAACCTGTAACCGCCGGCTTAGAAGGCCGGTGCTCTAT 5366
Query 66461 CCAGCTGAGCTA 66472
|||| |||||||
Sbjct 5365 CCAGTTGAGCTA 5354
>seq8280
Length=144189
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 66403 TGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCC 66462
|||| | |||| ||||| ||||||||| |||| | ||||||||||| | ||||||||||
Sbjct 25970 TGGCGCGCCCTGCAGGACTCGAACCTGCGACCGTCCGCTTAGAAGGCGGATGCTCTATCC 26029
Query 66463 AGCTGAGCTAAG 66474
||||||||||||
Sbjct 26030 AGCTGAGCTAAG 26041
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 522016918340040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |