Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031029.1 Length=93686 Score E Sequences producing significant alignments: (Bits) Value seq9463 114 8e-21 >seq9463 Length=63583 Score = 114 bits (126), Expect = 8e-21 Identities = 238/342 (70%), Gaps = 22/342 (6%) Strand=Plus/Minus Query 48902 AATTGTCACCACAACTACACCGAGCGGGTCGAG-ATCGC--CGGCAAGAAAGTGTGGCTC 48958 || || |||||||||||| || ||||| || ||| | |||||||| |||| || Sbjct 40229 AACTGCCACCACAACTACGTCGCGCGGG---AGCATCACTTCGGCAAGACGGTGTTCGTC 40173 Query 48959 ACGCGCAAGGGTGCAATCGACGCAAGCGAGGGTCGATATGGAC-TGATCCCCGGATCCAT 49017 || |||||||| || | || ||||||| ||| ||| | | |||||||| || || Sbjct 40172 ACCCGCAAGGGGGCGGTGCGGGCCGGCGAGGG-CGAACTGGGCATCATCCCCGGCTCGAT 40114 Query 49018 GGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAATGAGTCCGGCCTCTTCTCTGCGCC 49077 |||| || || | |||| |||||||| ||||| | ||| ||| | ||||| || Sbjct 40113 GGGCGCCCGCTCGTTCATCGTGCGCGGCAAGGGGAACG----CGGACTCGT-TCTGCACC 40059 Query 49078 C-----CATGGTGCCGGCCGTCAGTATTCGC-GCACCCAGGCCAAGAAGCTGTTCACCCT 49131 || || |||||||| | || || ||| | |||||||| || ||||| | Sbjct 40058 TGCTCGCACGGCGCCGGCCGGGCG-ATGAGCCGCAACGAGGCCAAGCGGCGCTTCACGGT 40000 Query 49132 GGATGACCTCG-CCGACCGAATGAAGGGCATCGAATACCGCCACGGCGAAGAGTGGATCG 49190 ||| |||| || ||| | | || |||| |||||| |||| | | || ||| ||||| Sbjct 39999 GGAGGACCACGTCCGCGCCACCGA-GGGCGTCGAATGCCGCAAGGACGCCGAGGTGATCG 39941 Query 49191 ACGAGATCCCGGACGCCTACAAGGACATCGACCAGGTGATGG 49232 |||| | ||| |||||||||||||||||| ||||||| Sbjct 39940 ACGAAACGCCGATGGCCTACAAGGACATCGACGCCGTGATGG 39899 Score = 104 bits (114), Expect = 1e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 48170 CTGCCGTTCATCCATCCTCACGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCT 48229 |||||||||||||| ||||| || | ||||| || | ||| | |||| || | Sbjct 40943 CTGCCGTTCATCCACAAGCACGTGGCGGTGATGCCCGACGTGCACTGGGGCATGGGCGCC 40884 Query 48230 GCCGTCGGCACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGAC 48289 |||||||| |||| || || || || | || | |||||||| ||||||||||| ||| Sbjct 40883 ACCGTCGGCTCGGTCATCCCGACCGTCGGGGCGATCATCCCGGCGGCGGTCGGCGTCGAC 40824 Query 48290 ATCGGCTGCGGCATGATCGGCGTGGAGACCTGGGTCC 48326 ||||||||||||||||| | ||| ||||| | ||| Sbjct 40823 ATCGGCTGCGGCATGATGGCGGTGTGGACCTCGATCC 40787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299615401023253