Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031029.1
Length=93686
Score E
Sequences producing significant alignments: (Bits) Value
seq9463 114 8e-21
>seq9463
Length=63583
Score = 114 bits (126), Expect = 8e-21
Identities = 238/342 (70%), Gaps = 22/342 (6%)
Strand=Plus/Minus
Query 48902 AATTGTCACCACAACTACACCGAGCGGGTCGAG-ATCGC--CGGCAAGAAAGTGTGGCTC 48958
|| || |||||||||||| || ||||| || ||| | |||||||| |||| ||
Sbjct 40229 AACTGCCACCACAACTACGTCGCGCGGG---AGCATCACTTCGGCAAGACGGTGTTCGTC 40173
Query 48959 ACGCGCAAGGGTGCAATCGACGCAAGCGAGGGTCGATATGGAC-TGATCCCCGGATCCAT 49017
|| |||||||| || | || ||||||| ||| ||| | | |||||||| || ||
Sbjct 40172 ACCCGCAAGGGGGCGGTGCGGGCCGGCGAGGG-CGAACTGGGCATCATCCCCGGCTCGAT 40114
Query 49018 GGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAATGAGTCCGGCCTCTTCTCTGCGCC 49077
|||| || || | |||| |||||||| ||||| | ||| ||| | ||||| ||
Sbjct 40113 GGGCGCCCGCTCGTTCATCGTGCGCGGCAAGGGGAACG----CGGACTCGT-TCTGCACC 40059
Query 49078 C-----CATGGTGCCGGCCGTCAGTATTCGC-GCACCCAGGCCAAGAAGCTGTTCACCCT 49131
|| || |||||||| | || || ||| | |||||||| || ||||| |
Sbjct 40058 TGCTCGCACGGCGCCGGCCGGGCG-ATGAGCCGCAACGAGGCCAAGCGGCGCTTCACGGT 40000
Query 49132 GGATGACCTCG-CCGACCGAATGAAGGGCATCGAATACCGCCACGGCGAAGAGTGGATCG 49190
||| |||| || ||| | | || |||| |||||| |||| | | || ||| |||||
Sbjct 39999 GGAGGACCACGTCCGCGCCACCGA-GGGCGTCGAATGCCGCAAGGACGCCGAGGTGATCG 39941
Query 49191 ACGAGATCCCGGACGCCTACAAGGACATCGACCAGGTGATGG 49232
|||| | ||| |||||||||||||||||| |||||||
Sbjct 39940 ACGAAACGCCGATGGCCTACAAGGACATCGACGCCGTGATGG 39899
Score = 104 bits (114), Expect = 1e-17
Identities = 117/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 48170 CTGCCGTTCATCCATCCTCACGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCT 48229
|||||||||||||| ||||| || | ||||| || | ||| | |||| || |
Sbjct 40943 CTGCCGTTCATCCACAAGCACGTGGCGGTGATGCCCGACGTGCACTGGGGCATGGGCGCC 40884
Query 48230 GCCGTCGGCACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGAC 48289
|||||||| |||| || || || || | || | |||||||| ||||||||||| |||
Sbjct 40883 ACCGTCGGCTCGGTCATCCCGACCGTCGGGGCGATCATCCCGGCGGCGGTCGGCGTCGAC 40824
Query 48290 ATCGGCTGCGGCATGATCGGCGTGGAGACCTGGGTCC 48326
||||||||||||||||| | ||| ||||| | |||
Sbjct 40823 ATCGGCTGCGGCATGATGGCGGTGTGGACCTCGATCC 40787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 299615401023253
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |