Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 471 6e-128
seq13960 132 7e-26
seq12849 111 2e-19
seq11415 111 2e-19
seq7661 91.5 2e-13
seq204 87.8 2e-12
>seq8995
Length=8301158
Score = 471 bits (522), Expect = 6e-128
Identities = 668/937 (71%), Gaps = 14/937 (1%)
Strand=Plus/Plus
Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851
||| ||||| |||| || | ||| ||| ||| | || ||||| ||||||||| |
Sbjct 6971316 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTTGGATTTGACATCACTCCCATTCT 6971375
Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911
|||| || | || | ||||| || || ||||| || || |||| ||| ||||||||
Sbjct 6971376 CTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 6971435
Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAG 47971
|||||| ||||| ||||| || | || ||| || |||| || | || || ||
Sbjct 6971436 CATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAG 6971495
Query 47972 TCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTT 48031
||||||||| ||||| || || || ||||||| |||||||| || || || ||
Sbjct 6971496 TCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 6971555
Query 48032 AACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGA 48091
|| || || ||||||||||| ||||| ||||| || | || |||| || |||||
Sbjct 6971556 CACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTC 6971615
Query 48092 TGTTACC----GTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAA 48147
|||| ||||| || ||| ||||| ||||| ||||| | || | ||
Sbjct 6971616 CTTTACTCTCTGTTTCGAAGGTTTGTG----CAACAGGTGTTTGAACATCAGGCAGGTAA 6971671
Query 48148 AATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCA 48207
| ||||| || | ||| |||||||| ||||| | ||| || ||||| ||||| || ||||
Sbjct 6971672 AGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCA 6971731
Query 48208 TTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTT 48267
| ||||| ||||| |||||||| ||||| | ||| ||||| || |||||||| |||||||
Sbjct 6971732 TCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTT 6971791
Query 48268 CTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTA---TCCACC 48324
| || || ||||| || | | ||||| || | ||||| |||| |||| |
Sbjct 6971792 CCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCCAGC 6971851
Query 48325 GTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 48384
| |||||||| ||||||||||| ||||||||||| || || || ||||| |||||||
Sbjct 6971852 GCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAGAA 6971911
Query 48385 AGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGT 48444
| | |||| ||| |||||||| |||||| || || | |||||||||||||| || |
Sbjct 6971912 ATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAAT 6971971
Query 48445 GAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCT 48504
| || ||||| || || || || || || || ||||| || || || ||||| || |
Sbjct 6971972 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTT 6972031
Query 48505 CCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATG 48564
| | ||| || || |||| || ||||||||||| |||||||| || ||||| || |
Sbjct 6972032 CTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAG 6972091
Query 48565 CTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATAT 48624
| | ||||| |||||||||| | || | | |||| | ||||| | || |
Sbjct 6972092 CCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGT 6972151
Query 48625 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATAT 48684
| || || | || || || |||||||||||||| || ||||| ||||| |||||||| |
Sbjct 6972152 CCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCT 6972211
Query 48685 TCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721
||| |||||| ||||| ||| || || || |||||
Sbjct 6972212 GCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 6972248
Score = 304 bits (336), Expect = 2e-77
Identities = 403/558 (72%), Gaps = 11/558 (2%)
Strand=Plus/Plus
Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894
||||| ||||||||| | ||||| || || || | ||||| || || ||||| || ||
Sbjct 6968491 GACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 6968550
Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAAT 47954
|||| ||| |||||||||||||| ||||| ||||| || | || ||| || ||||
Sbjct 6968551 TCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAG 6968610
Query 47955 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAA 48014
|| | || || ||||||||||| ||||| || || || ||||||| |||
Sbjct 6968611 CCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAA 6968670
Query 48015 TTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACA 48074
||||| || || || || || || || ||||||||||| ||||| ||||| || | ||
Sbjct 6968671 TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACT 6968730
Query 48075 GCATCCACTATTATCGATGTTACC----GTTTCCTCACTTGGTGGATACAACAAATGTTT 48130
|||| || ||||| |||| ||||| || ||| ||||| |||||
Sbjct 6968731 GCATTGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTG----CAACAGGTGTTT 6968786
Query 48131 AAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGA 48190
||||| | || | ||| ||||| || | ||| |||||||| ||||| | ||| || ||
Sbjct 6968787 GAACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGA 6968846
Query 48191 AAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCC 48250
||| ||||| || ||||| ||||| ||||| |||||||| ||||| | ||| ||||| ||
Sbjct 6968847 AAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACC 6968906
Query 48251 AGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC 48310
|||||||| |||||||| || || ||||| || | | ||||| || | |||||
Sbjct 6968907 GGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTC 6968966
Query 48311 GTTGTGTA---TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTC 48367
|||| |||| || |||||||| ||||||||||| ||||||||||| || ||
Sbjct 6968967 TTTGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTC 6969026
Query 48368 TATAGCATTAAAGAGAAA 48385
|| ||||| ||||||||
Sbjct 6969027 AATGGCATTGAAGAGAAA 6969044
>seq13960
Length=3940437
Score = 132 bits (146), Expect = 7e-26
Identities = 109/133 (82%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | ||
Sbjct 2049918 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 2049977
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| |||||||| || |||||||| |||||||| ||||| || || | | ||||||
Sbjct 2049978 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 2050037
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 2050038 TTTCTTATACCAT 2050050
Score = 113 bits (124), Expect = 6e-20
Identities = 130/175 (74%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798
|| |||| |||| ||| || ||||| ||||| | ||||| || || || ||||| || |
Sbjct 2074041 CACCACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCA 2074100
Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858
| || ||||||||||| || | ||||| | || || ||| | || || || ||| |||
Sbjct 2074101 GGATGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTAT 2074160
Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGAT 78913
| | || | ||| ||||||||| | |||| ||||| || |||||||||| |||
Sbjct 2074161 CCAGTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGGTGAT 2074215
Score = 102 bits (112), Expect = 1e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || ||||| || | || ||||| ||||| |||||||| || |||||||| || |||
Sbjct 2069781 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 2069840
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
|| ||||||||||| | || || || || ||||| || || | ||| | |||||||
Sbjct 2069841 TAGGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 2069900
Query 78519 ATATGCTGAGGTCTTTCAACC 78539
|| || || ||||||||| ||
Sbjct 2069901 ATGTGTTGTGGTCTTTCAGCC 2069921
>seq12849
Length=3269951
Score = 111 bits (122), Expect = 2e-19
Identities = 179/254 (70%), Gaps = 5/254 (2%)
Strand=Plus/Minus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933
||||||||| ||||| ||| ||| | | |||||||| |||||| | || ||||||
Sbjct 3072264 TCCAGTGGAACCAAAGCCTCCTGAAC--CCCTTTCAGTGTCATCTAAAATTTAAACTTCC 3072207
Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993
| | || || ||| |||| | || | | || || || || ||| ||||||| | ||
Sbjct 3072206 TCTATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTTGATCACCCTTTTTG 3072147
Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053
| |||||| | ||||| ||| ||| | ||| | || |||| | ||||||||||||
Sbjct 3072146 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCT 3072087
Query 46054 TCATCTATTACTCCCCCTCCCACATCGATACCTTTTAGAGACAGTCCAGATCTAGGAGCT 46113
|||||||| || | |||| ||||| || | || | || ||||| | ||||||
Sbjct 3072086 TCATCTATGACACAAGCTCCTACATCTATGAC-GTTGCTGCCAAGCCAGAACGAGGAGCC 3072028
Query 46114 ATTCTTCCATAACA 46127
| ||||||||| ||
Sbjct 3072027 ACTCTTCCATAGCA 3072014
>seq11415
Length=1221423
Score = 111 bits (122), Expect = 2e-19
Identities = 179/254 (70%), Gaps = 5/254 (2%)
Strand=Plus/Minus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933
||||||||| ||||| ||| ||| | | |||||||| |||||| | | ||||||
Sbjct 353789 TCCAGTGGAACCAAAGCCTCCTGAAC--CCCTTTCAGTGTCATCTAAAATTAAAACTTCC 353732
Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993
| | || || ||| |||| ||| | | || || || || |||| ||||||| | ||
Sbjct 353731 TCTATTTCTGGGTAAAATATCCGTGCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 353672
Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053
| ||| || | ||||| ||| ||| | ||| | || |||| | ||||||||||||
Sbjct 353671 ACTTCCAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCT 353612
Query 46054 TCATCTATTACTCCCCCTCCCACATCGATACCTTTTAGAGACAGTCCAGATCTAGGAGCT 46113
|||||||| || || |||| ||||| || | || | || ||||| | ||||||
Sbjct 353611 TCATCTATGACACCAGCTCCTACATCTATGAC-GTTGCTGCCAAGCCAGAACGAGGAGCC 353553
Query 46114 ATTCTTCCATAACA 46127
| ||||||||| ||
Sbjct 353552 ACTCTTCCATAGCA 353539
>seq7661
Length=1898141
Score = 91.5 bits (100), Expect = 2e-13
Identities = 116/159 (73%), Gaps = 3/159 (2%)
Strand=Plus/Minus
Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGT 48312
||||||| |||||||| || || ||||| || | | ||||| || | ||||| |
Sbjct 815896 AAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTT 815837
Query 48313 TGTGTA---TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTA 48369
||| |||| || |||||||| ||||||||||| ||||||||||| || || |
Sbjct 815836 TGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAA 815777
Query 48370 TAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAA 48408
| ||||| |||||||| | |||| ||| ||||||||
Sbjct 815776 TGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAA 815738
>seq204
Length=2014632
Score = 87.8 bits (96), Expect = 2e-12
Identities = 133/187 (71%), Gaps = 7/187 (4%)
Strand=Plus/Minus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933
|||||| || |||| ||| ||| | | |||||||| |||||| || ||| | ||||
Sbjct 1817917 TCCAGTAGAACCAAGACCTCCTGAAC--CCCTTTCAGTGTCATCTAAAGCTTGAATTTCC 1817860
Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993
| | || || ||| |||| | || | | || ||||| || |||| | ||||| | ||
Sbjct 1817859 TCAATTTCTGGGTAAAATATCCATTCACAAATAAGTTGTGCAATTCGACCACCCTTTTTG 1817800
Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053
| |||||| | ||||| ||| ||| | ||||| || |||| |||||||||||
Sbjct 1817799 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGAACAACACCAACAT---CTCTATAATCT 1817743
Query 46054 TCATCTA 46060
|||||||
Sbjct 1817742 TCATCTA 1817736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694538037281760
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