Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8995 471 6e-128 seq13960 132 7e-26 seq12849 111 2e-19 seq11415 111 2e-19 seq7661 91.5 2e-13 seq204 87.8 2e-12 >seq8995 Length=8301158 Score = 471 bits (522), Expect = 6e-128 Identities = 668/937 (71%), Gaps = 14/937 (1%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 ||| ||||| |||| || | ||| ||| ||| | || ||||| ||||||||| | Sbjct 6971316 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTTGGATTTGACATCACTCCCATTCT 6971375 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 |||| || | || | ||||| || || ||||| || || |||| ||| |||||||| Sbjct 6971376 CTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 6971435 Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAG 47971 |||||| ||||| ||||| || | || ||| || |||| || | || || || Sbjct 6971436 CATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAG 6971495 Query 47972 TCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTT 48031 ||||||||| ||||| || || || ||||||| |||||||| || || || || Sbjct 6971496 TCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 6971555 Query 48032 AACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGA 48091 || || || ||||||||||| ||||| ||||| || | || |||| || ||||| Sbjct 6971556 CACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTC 6971615 Query 48092 TGTTACC----GTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAA 48147 |||| ||||| || ||| ||||| ||||| ||||| | || | || Sbjct 6971616 CTTTACTCTCTGTTTCGAAGGTTTGTG----CAACAGGTGTTTGAACATCAGGCAGGTAA 6971671 Query 48148 AATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCA 48207 | ||||| || | ||| |||||||| ||||| | ||| || ||||| ||||| || |||| Sbjct 6971672 AGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCA 6971731 Query 48208 TTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTT 48267 | ||||| ||||| |||||||| ||||| | ||| ||||| || |||||||| ||||||| Sbjct 6971732 TCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTT 6971791 Query 48268 CTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTA---TCCACC 48324 | || || ||||| || | | ||||| || | ||||| |||| |||| | Sbjct 6971792 CCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCCAGC 6971851 Query 48325 GTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 48384 | |||||||| ||||||||||| ||||||||||| || || || ||||| ||||||| Sbjct 6971852 GCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAGAA 6971911 Query 48385 AGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGT 48444 | | |||| ||| |||||||| |||||| || || | |||||||||||||| || | Sbjct 6971912 ATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAAT 6971971 Query 48445 GAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCT 48504 | || ||||| || || || || || || || ||||| || || || ||||| || | Sbjct 6971972 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTT 6972031 Query 48505 CCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATG 48564 | | ||| || || |||| || ||||||||||| |||||||| || ||||| || | Sbjct 6972032 CTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAG 6972091 Query 48565 CTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATAT 48624 | | ||||| |||||||||| | || | | |||| | ||||| | || | Sbjct 6972092 CCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGT 6972151 Query 48625 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATAT 48684 | || || | || || || |||||||||||||| || ||||| ||||| |||||||| | Sbjct 6972152 CCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCT 6972211 Query 48685 TCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 ||| |||||| ||||| ||| || || || ||||| Sbjct 6972212 GCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 6972248 Score = 304 bits (336), Expect = 2e-77 Identities = 403/558 (72%), Gaps = 11/558 (2%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| ||||||||| | ||||| || || || | ||||| || || ||||| || || Sbjct 6968491 GACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 6968550 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAAT 47954 |||| ||| |||||||||||||| ||||| ||||| || | || ||| || |||| Sbjct 6968551 TCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAG 6968610 Query 47955 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAA 48014 || | || || ||||||||||| ||||| || || || ||||||| ||| Sbjct 6968611 CCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAA 6968670 Query 48015 TTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACA 48074 ||||| || || || || || || || ||||||||||| ||||| ||||| || | || Sbjct 6968671 TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACT 6968730 Query 48075 GCATCCACTATTATCGATGTTACC----GTTTCCTCACTTGGTGGATACAACAAATGTTT 48130 |||| || ||||| |||| ||||| || ||| ||||| ||||| Sbjct 6968731 GCATTGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTG----CAACAGGTGTTT 6968786 Query 48131 AAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGA 48190 ||||| | || | ||| ||||| || | ||| |||||||| ||||| | ||| || || Sbjct 6968787 GAACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGA 6968846 Query 48191 AAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCC 48250 ||| ||||| || ||||| ||||| ||||| |||||||| ||||| | ||| ||||| || Sbjct 6968847 AAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACC 6968906 Query 48251 AGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC 48310 |||||||| |||||||| || || ||||| || | | ||||| || | ||||| Sbjct 6968907 GGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTC 6968966 Query 48311 GTTGTGTA---TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTC 48367 |||| |||| || |||||||| ||||||||||| ||||||||||| || || Sbjct 6968967 TTTGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTC 6969026 Query 48368 TATAGCATTAAAGAGAAA 48385 || ||||| |||||||| Sbjct 6969027 AATGGCATTGAAGAGAAA 6969044 >seq13960 Length=3940437 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 2049918 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 2049977 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| |||||||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 2049978 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 2050037 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 2050038 TTTCTTATACCAT 2050050 Score = 113 bits (124), Expect = 6e-20 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || |||| |||| ||| || ||||| ||||| | ||||| || || || ||||| || | Sbjct 2074041 CACCACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCA 2074100 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 | || ||||||||||| || | ||||| | || || ||| | || || || ||| ||| Sbjct 2074101 GGATGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTAT 2074160 Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGAT 78913 | | || | ||| ||||||||| | |||| ||||| || |||||||||| ||| Sbjct 2074161 CCAGTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGGTGAT 2074215 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 2069781 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 2069840 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||||||||| | || || || || ||||| || || | ||| | ||||||| Sbjct 2069841 TAGGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 2069900 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 || || || ||||||||| || Sbjct 2069901 ATGTGTTGTGGTCTTTCAGCC 2069921 >seq12849 Length=3269951 Score = 111 bits (122), Expect = 2e-19 Identities = 179/254 (70%), Gaps = 5/254 (2%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | |||||||| |||||| | || |||||| Sbjct 3072264 TCCAGTGGAACCAAAGCCTCCTGAAC--CCCTTTCAGTGTCATCTAAAATTTAAACTTCC 3072207 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || ||| |||| | || | | || || || || ||| ||||||| | || Sbjct 3072206 TCTATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTTGATCACCCTTTTTG 3072147 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| | || |||| | |||||||||||| Sbjct 3072146 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCT 3072087 Query 46054 TCATCTATTACTCCCCCTCCCACATCGATACCTTTTAGAGACAGTCCAGATCTAGGAGCT 46113 |||||||| || | |||| ||||| || | || | || ||||| | |||||| Sbjct 3072086 TCATCTATGACACAAGCTCCTACATCTATGAC-GTTGCTGCCAAGCCAGAACGAGGAGCC 3072028 Query 46114 ATTCTTCCATAACA 46127 | ||||||||| || Sbjct 3072027 ACTCTTCCATAGCA 3072014 >seq11415 Length=1221423 Score = 111 bits (122), Expect = 2e-19 Identities = 179/254 (70%), Gaps = 5/254 (2%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | |||||||| |||||| | | |||||| Sbjct 353789 TCCAGTGGAACCAAAGCCTCCTGAAC--CCCTTTCAGTGTCATCTAAAATTAAAACTTCC 353732 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || ||| |||| ||| | | || || || || |||| ||||||| | || Sbjct 353731 TCTATTTCTGGGTAAAATATCCGTGCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 353672 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | ||| || | ||||| ||| ||| | ||| | || |||| | |||||||||||| Sbjct 353671 ACTTCCAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCT 353612 Query 46054 TCATCTATTACTCCCCCTCCCACATCGATACCTTTTAGAGACAGTCCAGATCTAGGAGCT 46113 |||||||| || || |||| ||||| || | || | || ||||| | |||||| Sbjct 353611 TCATCTATGACACCAGCTCCTACATCTATGAC-GTTGCTGCCAAGCCAGAACGAGGAGCC 353553 Query 46114 ATTCTTCCATAACA 46127 | ||||||||| || Sbjct 353552 ACTCTTCCATAGCA 353539 >seq7661 Length=1898141 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/159 (73%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGT 48312 ||||||| |||||||| || || ||||| || | | ||||| || | ||||| | Sbjct 815896 AAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTT 815837 Query 48313 TGTGTA---TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTA 48369 ||| |||| || |||||||| ||||||||||| ||||||||||| || || | Sbjct 815836 TGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAA 815777 Query 48370 TAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAA 48408 | ||||| |||||||| | |||| ||| |||||||| Sbjct 815776 TGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAA 815738 >seq204 Length=2014632 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/187 (71%), Gaps = 7/187 (4%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 |||||| || |||| ||| ||| | | |||||||| |||||| || ||| | |||| Sbjct 1817917 TCCAGTAGAACCAAGACCTCCTGAAC--CCCTTTCAGTGTCATCTAAAGCTTGAATTTCC 1817860 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || ||| |||| | || | | || ||||| || |||| | ||||| | || Sbjct 1817859 TCAATTTCTGGGTAAAATATCCATTCACAAATAAGTTGTGCAATTCGACCACCCTTTTTG 1817800 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||||| || |||| ||||||||||| Sbjct 1817799 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGAACAACACCAACAT---CTCTATAATCT 1817743 Query 46054 TCATCTA 46060 ||||||| Sbjct 1817742 TCATCTA 1817736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694538037281760