Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 471 6e-128
seq13960 136 6e-27
seq608 107 3e-18
>seq8995
Length=8301158
Score = 471 bits (522), Expect = 6e-128
Identities = 665/933 (71%), Gaps = 6/933 (1%)
Strand=Plus/Plus
Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 46340
||| |||||| |||| || | ||| ||| ||| | | |||||| ||||||||| |
Sbjct 6971316 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTTGGATTTGACATCACTCCCATTCT 6971375
Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400
|| | || | ||| | ||||| || || ||||| || || |||| ||| ||||||||
Sbjct 6971376 CTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 6971435
Query 46401 CATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAG 46460
|||||| ||||||||||| || || ||| || |||| || | || || ||
Sbjct 6971436 CATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAG 6971495
Query 46461 TCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 46520
||||||||| ||||| || || ||| ||||||| |||||||| || ||||| ||
Sbjct 6971496 TCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 6971555
Query 46521 GACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCGA 46580
|| || || ||||||||||| ||||| ||||| || | || |||| |||||
Sbjct 6971556 CACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTC 6971615
Query 46581 TGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATC 46640
||||| | | | ||| |||| || ||||| ||||| | || | ||| ||
Sbjct 6971616 CTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAACATCAGGCAGGTAAAGTC 6971675
Query 46641 ACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAG 46700
||| || | || |||||||| ||||| | ||| || ||||| ||||| |||||||| ||
Sbjct 6971676 ACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAG 6971735
Query 46701 TCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTAC 46760
||| || || |||||||| ||||||| ||| ||||| || |||||||| |||||||| ||
Sbjct 6971736 TCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCAC 6971795
Query 46761 AGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG---AATCCACCTTTG 46817
|| || || || || | | ||||| || | || || || | | |||| |
Sbjct 6971796 TGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCCAGCGCAA 6971855
Query 46818 AGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt 46877
|||||||| ||||| ||||| ||||||||||| || || || ||||| |||||||| |
Sbjct 6971856 GGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAGAAATTC 6971915
Query 46878 tttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAAT 46937
|||| | |||||||| || || || || | |||||||||||||| ||||| ||
Sbjct 6971916 CCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTAT 6971975
Query 46938 GTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGT 46997
|||||| || || || || || || || ||||| || || |||||||| || |||
Sbjct 6971976 GTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTCTTG 6972035
Query 46998 ACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAA 47057
| ||| || || ||| || ||||| ||||| |||||||| || ||||| || ||||
Sbjct 6972036 GCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAG 6972095
Query 47058 TACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTT 47117
||||| |||||||||| | || || | |||| | ||||| | || || ||
Sbjct 6972096 CACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTT 6972155
Query 47118 TGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCA 47177
|| | || || || ||||||||||| || || ||||| ||||| |||||||| | |||
Sbjct 6972156 GGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCA 6972215
Query 47178 TATATCACGATATTGGATCGGAAAAATAACAAA 47210
|||||| | |||| ||| ||||| || |||||
Sbjct 6972216 AATATCATGGTATTCGATAGGAAAGATGACAAA 6972248
Score = 302 bits (334), Expect = 6e-77
Identities = 426/597 (71%), Gaps = 6/597 (1%)
Strand=Plus/Plus
Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 46340
||| |||||| |||| || | ||| ||| ||| | |||||| ||||||||| |
Sbjct 6968448 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTCGGACTTGACATCACTCCCATTCT 6968507
Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400
|| || || ||||| | ||||| || || ||||| || || |||| ||| ||||||||
Sbjct 6968508 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 6968567
Query 46401 CATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAG 46460
|||||| ||||||||||| || || ||| || |||| || | || || ||
Sbjct 6968568 CATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAG 6968627
Query 46461 TCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 46520
||||||||| ||||| || || ||| ||||||| |||||||| || ||||| ||
Sbjct 6968628 TCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 6968687
Query 46521 GACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCGA 46580
|| || || ||||||||||| ||||| ||||| || | || |||| |||||
Sbjct 6968688 CACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTC 6968747
Query 46581 TGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATC 46640
||||| | | | ||| |||| || ||||| ||||| | || | ||| ||
Sbjct 6968748 CTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAACATCAGGCAGGTAAAGTC 6968807
Query 46641 ACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAG 46700
||| || | || |||||||| ||||| | ||| || ||||| ||||| |||||||| ||
Sbjct 6968808 ACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAG 6968867
Query 46701 TCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTAC 46760
||| || || |||||||| ||||||| ||| ||||| || |||||||| |||||||| ||
Sbjct 6968868 TCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCAC 6968927
Query 46761 AGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG---AATCCACCTTTG 46817
|| || || || || | | ||||| || | || || || | | |||| |
Sbjct 6968928 TGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCCAGCGCAA 6968987
Query 46818 AGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874
|||||||| ||||| ||||| ||||||||||| || || || ||||| ||||||||
Sbjct 6968988 GGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAGAAA 6969044
>seq13960
Length=3940437
Score = 136 bits (150), Expect = 6e-27
Identities = 110/133 (83%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | ||
Sbjct 2049918 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 2049977
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||| |||||||| || ||||||||||||||||| ||||| || || | | ||||||
Sbjct 2049978 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 2050037
Query 75842 TTTCTGAGACCAT 75854
||||| | |||||
Sbjct 2050038 TTTCTTATACCAT 2050050
>seq608
Length=3558542
Score = 107 bits (118), Expect = 3e-18
Identities = 98/124 (79%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711
|||||||||| || || | || || ||||| ||||| |||||||| ||||| | || |
Sbjct 2088602 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 2088543
Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771
| ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || |
Sbjct 2088542 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 2088483
Query 46772 CGAC 46775
| ||
Sbjct 2088482 CCAC 2088479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712800199010880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |