Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq10734 123 4e-23 seq7053 123 4e-23 seq9538 114 2e-20 seq6415 105 1e-17 seq11739 95.1 2e-14 seq9639 87.8 3e-12 >seq10734 Length=9239 Score = 123 bits (136), Expect = 4e-23 Identities = 156/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 99553 TGTTTGGGCATCAAATGCGTTTTAATTTGGCTGAAGGTTTTCCTCTGGTCACTACTAAGC 99612 ||||||| || |||||||| || |||| ||||| || || |||||||| || ||| Sbjct 1304 TGTTTGGCTGGCAGATGCGTTTCAACCTGGCCGAAGGCTTCCCGCTGGTCACCACCAAGA 1363 Query 99613 -GCTGTCACCTCCGTTCTATTATTCATGAACTCCTTTGGTTCCTGAAAGGGGATACCAAT 99671 |||| ||||| || || || || || || || || ||||||||||| || || ||||| Sbjct 1364 AGCTG-CACCTGCGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAAC 1422 Query 99672 ACCCAGTACCTGAAAGATAACGGCGTCACTATCTGGAATGAGTGGGAAAACGAGAACGGT 99731 | | |||||||| || ||| || |||||| | ||||||| |||| || || Sbjct 1423 ATCGGCTACCTGAAGGACAACCAGGTACGGATCTGGGACGAGTGGGCCGACGACAATGGC 1482 Query 99732 GACTTAGGACCGGTATACGGAAAGCAGTGGCG 99763 ||| | || ||||| ||||| ||||||||||| Sbjct 1483 GACCTCGGCCCGGTCTACGGCAAGCAGTGGCG 1514 >seq7053 Length=464797 Score = 123 bits (136), Expect = 4e-23 Identities = 180/252 (71%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 99522 GGCGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTG 99581 || ||||| || ||||| |||||| || | || || | || ||||| || | | Sbjct 70843 GGAGACCGCACCGGCACGGGTACGCGCTCGGTCTTCGGTTACCAGATGCGCTTCGACCTT 70784 Query 99582 GCTGAAGGTTTTCCTCTGGTCACTACTAAGC-GCTGTCACCTCCGTTCTATTATTCATGA 99640 | ||||||||||| | |||| || ||| |||| || || || || || || ||||| Sbjct 70783 TCCGAAGGTTTTCCGGTTCTCACCACCAAGAAGCTG-CATCTGCGCTCCATCATCCATGA 70725 Query 99641 ACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCAC 99700 | | || ||||||||||| || |||||||||| | || || || || |||||||| | Sbjct 70724 ATTGCTGTGGTTCCTGAAGGGCGATACCAATATCGCCTATCTCAAGGAAAACGGCGTTTC 70665 Query 99701 TATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTG 99760 |||||| | || |||| |||||||||| || | || ||||| || || |||||| Sbjct 70664 CATCTGGGACGAATGGGCCGACGAGAACGGCGATCTCGGCCCGGTCTATGGTGCGCAGTG 70605 Query 99761 GCGGTCTTGGCC 99772 ||| || ||||| Sbjct 70604 GCGTTCCTGGCC 70593 >seq9538 Length=646221 Score = 114 bits (126), Expect = 2e-20 Identities = 180/255 (71%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 99522 GGCGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTG 99581 |||||||| || ||||| || || || |||| || |||| |||||||| || || Sbjct 486498 GGCGACCGCACCGGCACCGGCACACGCTCGGTGTTCGGCTATCAGATGCGTTTCGATCTG 486557 Query 99582 GCTGAAGGTTTTCCTCTGGTCACTACTAAGCG-CTGTCACCTCCGTTCTATTATTCATGA 99640 || || || || || || | || || ||| ||| ||||| || || || || || Sbjct 486558 GCCGACGGCTTCCCGGTGCTTACCACCAAGAAACTG-CACCTGAAGTCGATCATCCACGA 486616 Query 99641 ACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCAC 99700 ||| || ||||| ||| || |||||||| | | | || ||||| || |||||||||| Sbjct 486617 ACTTCTGTGGTTTCTGGCCGGCGATACCAACATCAAATATCTGAACGACCACGGCGTCAC 486676 Query 99701 TATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTG 99760 |||||| | ||||||| | | || || || | || ||||| || || |||||||| Sbjct 486677 CATCTGGGACGAGTGGGCGGATGCCAAGGGCGATCTCGGCCCGGTCTATGGCAAGCAGTG 486736 Query 99761 GCGGTCTTGGCCCGA 99775 ||| || ||||| || Sbjct 486737 GCGCTCCTGGCCGGA 486751 >seq6415 Length=247467 Score = 105 bits (116), Expect = 1e-17 Identities = 177/251 (71%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 99522 GGCGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTG 99581 |||||||| || ||||| || ||| || |||| || | || || || || || || Sbjct 52966 GGCGACCGCACGGGCACCGGCACGCTGGGCGTGTTCGGCCGGCAGATCCGCTTCGATCTG 53025 Query 99582 GCTGAAGGTTTTCCTCTGGTCACTACTAAGC-GCTGTCACCTCCGTTCTATTATTCAT-G 99639 || | || || || | | || | ||| |||| ||||| || || || || ||| | Sbjct 53026 GCCAAGGGCTTCCCGGTTCTGACCTCCAAGAAGCTG-CACCTGCGCTCGATCAT-CATCG 53083 Query 99640 AACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCA 99699 | || || ||||||||||| || || ||||| | | ||||| || || |||||||| Sbjct 53084 AGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGCCTACCTCAAGGACAACGGCGTGC 53143 Query 99700 CTATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGT 99759 |||||| | ||||||| |||| ||||| || | || ||||| ||||| ||||||| Sbjct 53144 GCATCTGGGACGAGTGGGCCGACGAAAACGGCGATCTTGGCCCGGTCTACGGCAAGCAGT 53203 Query 99760 GGCGGTCTTGG 99770 |||| || ||| Sbjct 53204 GGCGCTCGTGG 53214 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 100172 CTGTCAACTCTACCAACGTAGCGCGGACGTGTTCTTAGGTGTGCCGTTCAATATCGCGTC 100231 ||| || ||||| ||||| ||||| |||||||||||||| ||||||||||| ||||| || Sbjct 53391 CTGCCAGCTCTATCAACGCAGCGCCGACGTGTTCTTAGGGGTGCCGTTCAACATCGCCTC 53450 Query 100232 GTACGCTCTGCTG 100244 ||||| |||||| Sbjct 53451 CTACGCCCTGCTG 53463 >seq11739 Length=237542 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 99507 GAAGGCGTTGTTAAAGGCGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAA 99566 || |||| || ||||| || |||||||| || ||||| ||| | ||||| |||||| Sbjct 9439 GATGGCGGTGACAAAGGTGATCGTACTGGTACAGGTACTCGTTCTGTATTTGGTCATCAA 9380 Query 99567 ATGCGTTTTAATTTGGCTGAAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGT 99626 ||||||||| | ||| | |||| ||||| || | || ||||| ||| |||| Sbjct 9379 ATGCGTTTTGACTTGTCAAAAGGGTTTCCGCTACTAACCACTAAAAAAATTCATTTCCGC 9320 Query 99627 TCTATTATTCATGAACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAA 99686 || ||| | |||||| || |||||||| ||||| || ||||| || || || ||| Sbjct 9319 TCCATTGTGATTGAACTGCTGTGGTTCCTAAAAGGCGACACCAACGTTCAATATCTTAAA 9260 Query 99687 GATAA 99691 || || Sbjct 9259 GACAA 9255 >seq9639 Length=103419 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 100172 CTGTCAACTCTACCAACGTAGCGCGGACGTGTTCTTAGGTGTGCCGTTCAATATCGCGTC 100231 ||| || || ||||| || ||||||||| | ||| | || || || ||||| ||||| Sbjct 3872 CTGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCTTCAACATCGCCAG 3813 Query 100232 GTACGCTCTGCTGGTTCACATGTTTGCACAACAAGCCAACATGGCCGTGGGCGACTTCGT 100291 ||||| |||||| |||||| | || || ||| | || ||| |||||||||||| | Sbjct 3812 CTACGCGCTGCTGACCCACATGCTGGCCCAGCAATGCGACCTGGAGGTGGGCGACTTCAT 3753 Query 100292 CTGGACGGGTGGTGAC 100307 |||||| || || ||| Sbjct 3752 CTGGACCGGCGGCGAC 3737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734136981872040