Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq9803 105 2e-18 seq7041 102 2e-17 seq9673 89.7 1e-13 seq9910 86.0 2e-12 >seq9803 Length=69196 Score = 105 bits (116), Expect = 2e-18 Identities = 186/270 (69%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 26926 GATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCATTTACGGGTTCGCAGACC 26985 |||||| |||||||| || || || | | || ||||||||| ||| ||| || Sbjct 17749 GATTTCCGTGGTGTAACGGGTTACACCATCTTTTTC---CCATTTACGTGTTTGCAAACG 17693 Query 26986 GCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCAGCTT 27045 ||||| | | ||| | |||||| | |||||||||||| ||||| || || Sbjct 17692 ACCTTCTACATATACCGGACGGCCTTTTTTTAAGTATTCACCAGCAATTTCAGCAAGACG 17633 Query 27046 GCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTTCGCCTGTGGCCTTATC 27105 | | | ||||||| |||||| ||||| | |||| | |||| || || || Sbjct 17632 ACGGTACATGACAATATTGTGCCACTCCGTTTTTTCTTGTTTAACGCC---GGATTTGTC 17576 Query 27106 TTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCAACTGCGCCACCTGACGGCATGTA 27165 |||||| || ||||| |||||||| || | || || || || |||| |||||||| Sbjct 17575 TTTCCAGTTATCGGTAGTGGCAATACTAAAGTTAGCCACCGCCTCACCATTGGGCATGTA 17516 Query 27166 GCGCACTTCTGGATCGTTGCCTAAATTACC 27195 |||||||| |||||| ||||||||||| Sbjct 17515 ACGCACTTCCGGATCGCGCCCTAAATTACC 17486 >seq7041 Length=191181 Score = 102 bits (112), Expect = 2e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 25271 GGTGGCGACCCCACCAGGAATCGAACCTGGAACCTACAGCTTAGAAGGCTGTCGCTCTAT 25330 |||||||||||| ||||| ||||||||| |||||| ||||||||||| || ||||||| Sbjct 50844 GGTGGCGACCCCTGCAGGACTCGAACCTGCGACCTACTGCTTAGAAGGCAGTTGCTCTAT 50785 Query 25331 CCGGTTGAGCTATGGGGCCGT 25351 || ||||||||| |||||||| Sbjct 50784 CCAGTTGAGCTAAGGGGCCGT 50764 >seq9673 Length=4878 Score = 89.7 bits (98), Expect = 1e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 25273 TGGCGACCCCACCAGGAATCGAACCTGGAACCTACAGCTTAGAAGGCTGTCGCTCTATCC 25332 |||||| ||| ||||| ||||||||| ||| ||||||||||||||||| ||||||||| Sbjct 562 TGGCGATCCCGACAGGATTCGAACCTGTGACCCACAGCTTAGAAGGCTGTTGCTCTATCC 503 Query 25333 GGTTGAGCTATGGGGCCGT 25351 | ||||||| ||| |||| Sbjct 502 AGCTGAGCTACGGGACCGT 484 >seq9910 Length=308115 Score = 86.0 bits (94), Expect = 2e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 25285 CAGGAATCGAACCTGGAACCTACAGCTTAGAAGGCTGTCGCTCTATCCGGTTGAGCTATG 25344 ||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| | Sbjct 244684 CAGGAATCGAACCTGTAACCCCCAGCTTAGAAGGCTGGTGCTCTATCCGGTTGAGCTACG 244743 Query 25345 GG 25346 || Sbjct 244744 GG 244745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133992034505040