Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031059.1
Length=38773
Score E
Sequences producing significant alignments: (Bits) Value
seq9622 333 7e-87
>seq9622
Length=151425
Score = 333 bits (368), Expect = 7e-87
Identities = 524/736 (71%), Gaps = 21/736 (3%)
Strand=Plus/Minus
Query 15303 TACAAGGCGCTGGAGGTCCGCTTTCCCAACCGCTCCCGCATCACCGCGCTGCCGGCCAAC 15362
|||| ||||| || || || || || |||| |||||| |||||||| |||||
Sbjct 103046 TACACCGCGCTCGAAGTGGCGTTGCCGCACGGCTCACGCATCCTGGCGCTGCCCGCCAAT 102987
Query 15363 CCCGACACGGCGCGGGGGTTCAGTGCCAATGTGATCCTCGACGAATTCGCCTTTCACGCC 15422
||||| |||||||| || || |||||||| ||||||||||||||||||| |||
Sbjct 102986 CCCGATACGGCGCGCGGTTTTTCAGCCAATGTCTTCCTCGACGAATTCGCCTTCCACA-- 102929
Query 15423 AAGTC-GCGC-GAGATCTGGGCGGCGCTCTTCCCGGTCGTGTCCAAGGGCGATCAGAAGC 15480
| | | || | | |||||| |||||| || ||||| | || || || ||| |
Sbjct 102928 AGGACAGCACCGCCATCTGGAAGGCGCTGTTTCCGGTGATCTC---GGCCGGCTGGAAAC 102872
Query 15481 TGCGGGTGATCAGCACGCCCAACGGCAAGGGCAACAAGTTCTTCGAGCT-GATGACGG-- 15537
|||| || | | ||||||||||||||| |||||||| |||||| || |||
Sbjct 102871 TGCGCGTTACCTCGACGCCCAACGGCAAGTCGGGCAAGTTCTACGAGCTCGACACCGGTA 102812
Query 15538 CCGAGGACAGTGTCTGGTCGCGCCATGTGGTCGATATCTACGAGGCCGTGCGCCA-GGGC 15596
|||| || || |||||| ||||||| ||||| |||||| |||| ||| | | ||||
Sbjct 102811 CCGA---CACTGCCTGGTCACGCCATGCCGTCGACATCTACCAGGCGGTGGCCGACGGGC 102755
Query 15597 TGCCCGCGCGATGTGGACATGCTGCGCGCCGGGATCGCGGACGAGGATGCCTGGGCGCAG 15656
|||| |||||| | || |||||||||| |||| |||||||||||||||||||||
Sbjct 102754 TGCC-GCGCGACATCGAGGAATTGCGCGCCGGCCTCGCTGACGAGGATGCCTGGGCGCAG 102696
Query 15657 GAATACGAGCTGAAATGGCTGGATGCCGCCAGCGCCTGGCTCGATTACGACCTGATC--T 15714
||||||||||| |||| || || | || |||||| ||||| ||||| |
Sbjct 102695 GAATACGAGCTCAAATATCTCGACGAGGCGTCGAGCTGGCTGTCCTACGAATTGATCAGT 102636
Query 15715 CCGCCTGCGAACGCGAGGAGGCCGGCAAGCCAGAGCTTTACCAGGGCGGCCCCTGCTTCG 15774
|| | | | ||| || |||||| | || || || ||||||||| ||| |||
Sbjct 102635 TCGGTCGAGGATGCGCGG--GCCGGCGAACCGGAAGCCTATCAGGGCGGCGTCTGTTTCA 102578
Query 15775 TGGGGGTCGACATTGCGGCGC-GCAACGACCTGTTCGTGATCTGGGTGGTGGAAGAGACG 15833
| || |||||||| | | ||| |||| ||||| ||||| ||||||||| | ||| ||
Sbjct 102577 TCGGCGTCGACATCG-GCCGCCGCAATGACCTCTTCGTCATCTGGGTGCTTGAACAGGTC 102519
Query 15834 GGCGGCCGGCTGGTCACGCGCGAGGTGATTGCGCAAAAGCGGATCACATTCGCCGAACAG 15893
|||| | || ||||||||| | | | | || || ||| ||||||| |||
Sbjct 102518 GGCGACGTTTTGTGGACGCGCGAGATCGTCGAGATGAAACGCGCCACCTTCGCCGCGCAG 102459
Query 15894 GACGCGCTGCTGGACGATGTCTTCCGCCGTTATCGCGTGGTGCGCGCGGGTATGGACCAG 15953
||| | ||||||||| || | || || || ||||| | |||| | |||||||||
Sbjct 102458 GACCAGGCGCTGGACGAGGTGATGCGGCGCTACCGCGTCGGCCGCGGCTGCATGGACCAG 102399
Query 15954 ACCGGCATGGGCGAAAAACCGGTGGAGGACGCCAAGCGCCGCCATGGCGCGGCCCGCATC 16013
||||||||||| ||||| ||||| ||||| || ||||||| |||||| |||||||
Sbjct 102398 ACCGGCATGGGTGAAAAGCCGGTTGAGGATGCGCAGCGCCGTTATGGCGAACACCGCATC 102339
Query 16014 GACGGCGTGCTGTTCA 16029
|| ||||| |||||||
Sbjct 102338 GAGGGCGTCCTGTTCA 102323
Score = 132 bits (146), Expect = 1e-26
Identities = 260/377 (69%), Gaps = 7/377 (2%)
Strand=Plus/Minus
Query 16952 AAGGCGAAGTCGGGTCTGGCGATCCGCGGCGGTCTGGCCAGGCTCGCCGCCTGGGCCTAC 17011
|| || ||||| || ||| |||| || ||| ||||| | |||||||||||||||
Sbjct 101386 AAAGCAAAGTCCGGCCTGCCGATGCGTTCCGGCCTGGCGCGCGTCGCCGCCTGGGCCTGG 101327
Query 17012 ATGTTCAAGAACTTCAACCTGAAGGACTGGGCGATCTTTGCCGAGGCCTATGGCCATCCC 17071
||||||||| |||| | |||||||||||||| || || |||||||||| ||
Sbjct 101326 ATGTTCAAGGCCTTCGCCAATCGCGACTGGGCGATCTTCACCCAGACCTATGGCCAGCCG 101267
Query 17072 CTGCGGCTGGGCCGGTATGACGAAAACGCCACGGCCGAGGA-TCGCGCAACGCTCTTGCG 17130
| || | ||| |||| || ||||||| | ||| || |||||| ||||| ||
Sbjct 101266 ATCCGCATCGGCAAATATGGCGCCGACGCCACCGACGACGACAAGCGCAA-GCTCTACCG 101208
Query 17131 CGCGGTGCGCCAGATCGGGGTCGACATGGCCGCGATCGTGCCGCGCAGCATGGAGGTGGA 17190
|||||| | | |||| | ||| ||||||||| ||||| | |||||| | | ||
Sbjct 101207 GGCGGTGGCCAATATCGCCGGCGATTGTGCCGCGATCATGCCGGACGGCATGGCGATCGA 101148
Query 17191 GATCGTC--AGCGCCGCCG-GCGGCGGAGTGGACAAGCTCTACG-AAGGGGCTGCGCGCT 17246
| ||||| ||| || ||||| | | | || || | || | || || ||
Sbjct 101147 GTTCGTCGAGGCGAAATCGATCGGCGCCTCGATCGACCTTTATGAAAAGCGCGTCG-ACT 101089
Query 17247 GGTGGGACGAGCAGATCTCCAAGGGCGTGCTTGGCCAGGTGGCGACCACCGACGCCATCG 17306
|| ||| ||| |||| |||| |||||||||||| | || ||||||||||||
Sbjct 101088 GGCTGGATCGCCAGGTCTCAAAGGCGGTGCTTGGCCAGACCACCACGACCGACGCCATCA 101029
Query 17307 CCGGCGGTCATGCCGTG 17323
||||||| |||||||||
Sbjct 101028 CCGGCGGCCATGCCGTG 101012
Score = 84.2 bits (92), Expect = 5e-12
Identities = 126/173 (73%), Gaps = 6/173 (3%)
Strand=Plus/Minus
Query 15023 CCGGTTCAAGATCGGCATGATGTCCCGCCAGATCGGCAAGACCTTTTCGACCT-GCGGCG 15081
||| |||||| | |||| | | | ||||||| |||||||||||| | || || | |
Sbjct 103284 CCGCTTCAAGCTGGGCAAGTTCGCGCGCCAGACCGGCAAGACCTTCACCACGACGCTG-G 103226
Query 15082 AATGCGTGGATGACTGTTTCGC-CGGCTGGGCCGAGGATCGC-CGCGCGCGCTGGGTGAT 15139
| ||| || ||| |||||| | ||| | ||| || ||| |||||||||||||
Sbjct 103225 AGACCGTCGACGACAGTTTCGAACATGTGGTC--AGGCAGGCGCGCACGCGCTGGGTGAT 103168
Query 15140 CCTCAGCCGGGGCGAACGCCAGGCGGCCGAGGCGATGGATGAGGCGATCAAGC 15192
||| || ||||||||||||||| |||||||||||| |||| ||||||
Sbjct 103167 CCTGTCGCGCGGCGAACGCCAGGCGCGCGAGGCGATGGACGAGGGCGTCAAGC 103115
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 123929834206130
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |