Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031059.1 Length=38773 Score E Sequences producing significant alignments: (Bits) Value seq9622 333 7e-87 >seq9622 Length=151425 Score = 333 bits (368), Expect = 7e-87 Identities = 524/736 (71%), Gaps = 21/736 (3%) Strand=Plus/Minus Query 15303 TACAAGGCGCTGGAGGTCCGCTTTCCCAACCGCTCCCGCATCACCGCGCTGCCGGCCAAC 15362 |||| ||||| || || || || || |||| |||||| |||||||| ||||| Sbjct 103046 TACACCGCGCTCGAAGTGGCGTTGCCGCACGGCTCACGCATCCTGGCGCTGCCCGCCAAT 102987 Query 15363 CCCGACACGGCGCGGGGGTTCAGTGCCAATGTGATCCTCGACGAATTCGCCTTTCACGCC 15422 ||||| |||||||| || || |||||||| ||||||||||||||||||| ||| Sbjct 102986 CCCGATACGGCGCGCGGTTTTTCAGCCAATGTCTTCCTCGACGAATTCGCCTTCCACA-- 102929 Query 15423 AAGTC-GCGC-GAGATCTGGGCGGCGCTCTTCCCGGTCGTGTCCAAGGGCGATCAGAAGC 15480 | | | || | | |||||| |||||| || ||||| | || || || ||| | Sbjct 102928 AGGACAGCACCGCCATCTGGAAGGCGCTGTTTCCGGTGATCTC---GGCCGGCTGGAAAC 102872 Query 15481 TGCGGGTGATCAGCACGCCCAACGGCAAGGGCAACAAGTTCTTCGAGCT-GATGACGG-- 15537 |||| || | | ||||||||||||||| |||||||| |||||| || ||| Sbjct 102871 TGCGCGTTACCTCGACGCCCAACGGCAAGTCGGGCAAGTTCTACGAGCTCGACACCGGTA 102812 Query 15538 CCGAGGACAGTGTCTGGTCGCGCCATGTGGTCGATATCTACGAGGCCGTGCGCCA-GGGC 15596 |||| || || |||||| ||||||| ||||| |||||| |||| ||| | | |||| Sbjct 102811 CCGA---CACTGCCTGGTCACGCCATGCCGTCGACATCTACCAGGCGGTGGCCGACGGGC 102755 Query 15597 TGCCCGCGCGATGTGGACATGCTGCGCGCCGGGATCGCGGACGAGGATGCCTGGGCGCAG 15656 |||| |||||| | || |||||||||| |||| ||||||||||||||||||||| Sbjct 102754 TGCC-GCGCGACATCGAGGAATTGCGCGCCGGCCTCGCTGACGAGGATGCCTGGGCGCAG 102696 Query 15657 GAATACGAGCTGAAATGGCTGGATGCCGCCAGCGCCTGGCTCGATTACGACCTGATC--T 15714 ||||||||||| |||| || || | || |||||| ||||| ||||| | Sbjct 102695 GAATACGAGCTCAAATATCTCGACGAGGCGTCGAGCTGGCTGTCCTACGAATTGATCAGT 102636 Query 15715 CCGCCTGCGAACGCGAGGAGGCCGGCAAGCCAGAGCTTTACCAGGGCGGCCCCTGCTTCG 15774 || | | | ||| || |||||| | || || || ||||||||| ||| ||| Sbjct 102635 TCGGTCGAGGATGCGCGG--GCCGGCGAACCGGAAGCCTATCAGGGCGGCGTCTGTTTCA 102578 Query 15775 TGGGGGTCGACATTGCGGCGC-GCAACGACCTGTTCGTGATCTGGGTGGTGGAAGAGACG 15833 | || |||||||| | | ||| |||| ||||| ||||| ||||||||| | ||| || Sbjct 102577 TCGGCGTCGACATCG-GCCGCCGCAATGACCTCTTCGTCATCTGGGTGCTTGAACAGGTC 102519 Query 15834 GGCGGCCGGCTGGTCACGCGCGAGGTGATTGCGCAAAAGCGGATCACATTCGCCGAACAG 15893 |||| | || ||||||||| | | | | || || ||| ||||||| ||| Sbjct 102518 GGCGACGTTTTGTGGACGCGCGAGATCGTCGAGATGAAACGCGCCACCTTCGCCGCGCAG 102459 Query 15894 GACGCGCTGCTGGACGATGTCTTCCGCCGTTATCGCGTGGTGCGCGCGGGTATGGACCAG 15953 ||| | ||||||||| || | || || || ||||| | |||| | ||||||||| Sbjct 102458 GACCAGGCGCTGGACGAGGTGATGCGGCGCTACCGCGTCGGCCGCGGCTGCATGGACCAG 102399 Query 15954 ACCGGCATGGGCGAAAAACCGGTGGAGGACGCCAAGCGCCGCCATGGCGCGGCCCGCATC 16013 ||||||||||| ||||| ||||| ||||| || ||||||| |||||| ||||||| Sbjct 102398 ACCGGCATGGGTGAAAAGCCGGTTGAGGATGCGCAGCGCCGTTATGGCGAACACCGCATC 102339 Query 16014 GACGGCGTGCTGTTCA 16029 || ||||| ||||||| Sbjct 102338 GAGGGCGTCCTGTTCA 102323 Score = 132 bits (146), Expect = 1e-26 Identities = 260/377 (69%), Gaps = 7/377 (2%) Strand=Plus/Minus Query 16952 AAGGCGAAGTCGGGTCTGGCGATCCGCGGCGGTCTGGCCAGGCTCGCCGCCTGGGCCTAC 17011 || || ||||| || ||| |||| || ||| ||||| | ||||||||||||||| Sbjct 101386 AAAGCAAAGTCCGGCCTGCCGATGCGTTCCGGCCTGGCGCGCGTCGCCGCCTGGGCCTGG 101327 Query 17012 ATGTTCAAGAACTTCAACCTGAAGGACTGGGCGATCTTTGCCGAGGCCTATGGCCATCCC 17071 ||||||||| |||| | |||||||||||||| || || |||||||||| || Sbjct 101326 ATGTTCAAGGCCTTCGCCAATCGCGACTGGGCGATCTTCACCCAGACCTATGGCCAGCCG 101267 Query 17072 CTGCGGCTGGGCCGGTATGACGAAAACGCCACGGCCGAGGA-TCGCGCAACGCTCTTGCG 17130 | || | ||| |||| || ||||||| | ||| || |||||| ||||| || Sbjct 101266 ATCCGCATCGGCAAATATGGCGCCGACGCCACCGACGACGACAAGCGCAA-GCTCTACCG 101208 Query 17131 CGCGGTGCGCCAGATCGGGGTCGACATGGCCGCGATCGTGCCGCGCAGCATGGAGGTGGA 17190 |||||| | | |||| | ||| ||||||||| ||||| | |||||| | | || Sbjct 101207 GGCGGTGGCCAATATCGCCGGCGATTGTGCCGCGATCATGCCGGACGGCATGGCGATCGA 101148 Query 17191 GATCGTC--AGCGCCGCCG-GCGGCGGAGTGGACAAGCTCTACG-AAGGGGCTGCGCGCT 17246 | ||||| ||| || ||||| | | | || || | || | || || || Sbjct 101147 GTTCGTCGAGGCGAAATCGATCGGCGCCTCGATCGACCTTTATGAAAAGCGCGTCG-ACT 101089 Query 17247 GGTGGGACGAGCAGATCTCCAAGGGCGTGCTTGGCCAGGTGGCGACCACCGACGCCATCG 17306 || ||| ||| |||| |||| |||||||||||| | || |||||||||||| Sbjct 101088 GGCTGGATCGCCAGGTCTCAAAGGCGGTGCTTGGCCAGACCACCACGACCGACGCCATCA 101029 Query 17307 CCGGCGGTCATGCCGTG 17323 ||||||| ||||||||| Sbjct 101028 CCGGCGGCCATGCCGTG 101012 Score = 84.2 bits (92), Expect = 5e-12 Identities = 126/173 (73%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 15023 CCGGTTCAAGATCGGCATGATGTCCCGCCAGATCGGCAAGACCTTTTCGACCT-GCGGCG 15081 ||| |||||| | |||| | | | ||||||| |||||||||||| | || || | | Sbjct 103284 CCGCTTCAAGCTGGGCAAGTTCGCGCGCCAGACCGGCAAGACCTTCACCACGACGCTG-G 103226 Query 15082 AATGCGTGGATGACTGTTTCGC-CGGCTGGGCCGAGGATCGC-CGCGCGCGCTGGGTGAT 15139 | ||| || ||| |||||| | ||| | ||| || ||| ||||||||||||| Sbjct 103225 AGACCGTCGACGACAGTTTCGAACATGTGGTC--AGGCAGGCGCGCACGCGCTGGGTGAT 103168 Query 15140 CCTCAGCCGGGGCGAACGCCAGGCGGCCGAGGCGATGGATGAGGCGATCAAGC 15192 ||| || ||||||||||||||| |||||||||||| |||| |||||| Sbjct 103167 CCTGTCGCGCGGCGAACGCCAGGCGCGCGAGGCGATGGACGAGGGCGTCAAGC 103115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123929834206130