Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031077.1
Length=41760
Score E
Sequences producing significant alignments: (Bits) Value
seq9777 309 8e-80
seq1205 183 8e-42
seq11405 123 7e-24
seq9916 86.0 2e-12
>seq9777
Length=39614
Score = 309 bits (342), Expect = 8e-80
Identities = 432/598 (72%), Gaps = 16/598 (3%)
Strand=Plus/Plus
Query 920 TCCGGACACGGTATCGGTAAATCAGCGTTTATCTCGATGCTGATCAACTGGGGCATGTCC 979
|| || ||||| ||||| || || ||| | | ||||||||||||| |||| | | |
Sbjct 25523 TCGGGCCACGGCATCGGCAAGTCCGCGCTGGTGGCGATGCTGATCAAGTGGGCCTTCGAC 25582
Query 980 ACCTGCGAGGACT-GCAAGGTAGTGGTCACCGCGAACACCGACAATCAGTTGCGTACAAA 1038
|| | ||| ||| || || || ||||| || |||||||||| ||| |||| || ||
Sbjct 25583 ACGTTCGAAGACACGCGCGGC-GTCGTCACAGCCAACACCGACATCCAGCTGCGCACGAA 25641
Query 1039 AACATGGCCTGAAATCATCAAGTGGTC-GAACCTTGCTATCACGAAAGAGTGGTTTAC-C 1096
|| ||| | ||| | |||||| ||| || |||| || || ||| || |
Sbjct 25642 GACCTGGGCGGAACTGTCGAAGTGGCATGAAATCAGCC-TCACCAAGGACTGGGCCACGC 25700
Query 1097 TGCACCGCCACAGCGATGTACAGCAACGATCCGGGACACGATAAACGCTGGCGCGCTGAC 1156
|| |||||||| ||| || |||||||| ||||| ||||| || ||||||| |||
Sbjct 25701 TG-ACCGCCACGGCGCTGATCAGCAACGCCCCGGGCCACGACAAGACCTGGCGCATCGAC 25759
Query 1157 GCTATTCCATGGTCTGAGCACAACACTGAAGCATTCGCCGGGCTGCACAACGAGCGCAAG 1216
|| | || ||||| || ||||||| || || ||||| || |||||||||||| || |
Sbjct 25760 GCGGTGCCGTGGTCGCAGAACAACACCGAGGCGTTCGCAGGCCTGCACAACGAGGGCCGG 25819
Query 1217 CGCATCATCGTGGTATTCGACGAAGCCTCAAACATTGCCGATCTGGTGTGGGAGGTTGCC 1276
|||||| | |||| |||||||| || || ||| ||||| ||||||||| || |||
Sbjct 25820 CGCATCCTGCTGGTGTTCGACGAGGCTTCGGCCATCGCCGACAAGGTGTGGGAAGTGGCC 25879
Query 1277 GAGGGTGCGCTGACGGACGAGGACACCGAAATCATCTGGGTGGCGTTCGGTAACCCGACG 1336
|||||||||||||| ||| ||| |||||| |||||||||| |||||||| ||| | ||
Sbjct 25880 GAGGGTGCGCTGACCGACCAGGGCACCGAGATCATCTGGGCCGCGTTCGGCAACACCACC 25939
Query 1337 CGTAACACCGGGCGTTTCCGCGAGTGCTTCCGCAAATACCGGCATCGCTGGAAGTGCGCG 1396
|| |||||||| || |||||||||||||||||| | | | | ||| | || |
Sbjct 25940 CGCAACACCGGCCGGTTCCGCGAGTGCTTCCGCCGGTTCAAGGCCAGTTGGGACACCGAG 25999
Query 1397 CAGATTGACAGCCGCACCGTTGAGGGCACCAAC-----AAAGAGCAACTGCAAAAGTGGG 1451
||||| |||||||||||||||||||| ||| || | | ||| ||
Sbjct 26000 CAGATCGACAGCCGCACCGTTGAGGGTGTGAACCTGGTCGAGGCCGAGCGCA-----TGG 26054
Query 1452 TGGACGACTACGGCGAAGACAGCGACTTCGTGAAGGTGCGTGTACGCGGCATCTTCCC 1509
|| |||||||||||| ||||||||| | |||||||| ||| | |||||| | |||||
Sbjct 26055 TGCGCGACTACGGCGAGGACAGCGACGTGGTGAAGGTCCGTATCCGCGGCCTGTTCCC 26112
>seq1205
Length=48877
Score = 183 bits (202), Expect = 8e-42
Identities = 403/597 (68%), Gaps = 8/597 (1%)
Strand=Plus/Plus
Query 917 GCATCCGGACACGGTATCGGTAAATCAGCGTTTATCTCGATGCTGATCAACTGGGGCATG 976
|| ||||| ||||||||||| || || || ||||| ||| | | ||| |||| |
Sbjct 35848 GCGTCCGGCCACGGTATCGGCAAGTCGGCCGGCATCTCCATGATCAACAAGTGGGCGCTC 35907
Query 977 TCCACCTGCGAGGACTGCAAGGTAGTGGTCACCGCGAACACCGACAATCAGTTGCGTACA 1036
|||||||| ||| | | || ||||||| || ||||| ||| ||| ||
Sbjct 35908 GACACCTGCGTCGACACCCGCATCGTCATCACCGCCAATACCGAGGGCCAGCTGCTCACC 35967
Query 1037 AAAACATGGCCTGAAATCATCAAGTGGTCGAACCTTGCTATCACGAAAGAGTGGTTTACC 1096
|| || |||| || | |||||| || | || || |||| || ||||| |
Sbjct 35968 AAGACTGGGCCGGAGCTGGCGAAGTGGGCGCAGCTCGCGGTCACCGGCGACTGGTTCAAG 36027
Query 1097 TGCACCGCCAC-AGCGATGTACAGCAACGATCCGGGACACGATAAACG--CTGGCGCGCT 1153
|| ||||| ||| || | || || | ||| || | | | ||||||| |
Sbjct 36028 GTCAATGCCACCAGCATCGTGTCG--ACCATGGGCGAC-CGGTCGAAGTCCTGGCGCACC 36084
Query 1154 GACGCTATTCCATGGTCTGAGCACAACACTGAAGCATTCGCCGGGCTGCACAACGAGCGC 1213
||| | | | ||||| | | ||||||| || || |||||||| ||||| || || ||
Sbjct 36085 GACCTTGTCACCTGGTCGGCGAACAACACCGAGGCGTTCGCCGGCCTGCATAATCAGGGC 36144
Query 1214 AAGCGCATCATCGTGGTATTCGACGAAGCCTCAAACATTGCCGATCTGGTGTGGGAGGTT 1273
||||||||| | || | |||||||| || ||| ||| | | ||||||||||||
Sbjct 36145 AAGCGCATCGTGCTGATCTTCGACGAGGCGTCAGGCATCATCAACAAGGTGTGGGAGGTC 36204
Query 1274 GCCGAGGGTGCGCTGACGGACGAGGACACCGAAATCATCTGGGTGGCGTTCGGTAACCCG 1333
|| || ||||| || |||||||| ||||| ||| | ||| | || ||||| || ||
Sbjct 36205 GCGCTCGGCGCGCTCACCGACGAGGATACCGAGATCCTGTGGCTCGCCTTCGGCAATCCC 36264
Query 1334 ACGCGTAACACCGGGCGTTTCCGCGAGTGCTTCCGCAAATACCGGCATCGCTGGAAG-TG 1392
|| | |||||||| |||||||| |||| |||| |||| | |||||| |
Sbjct 36265 ACACTCAACACCGGCTCGTTCCGCGACTGCTATGGCAAGAGCCGGAACATGTGGAAGACG 36324
Query 1393 CGCGCAGATTGACAGCCGCACCGTTGAGGGCACCAACAAAGAGCAACTGCAAAAGTGGGT 1452
|| |||||| || || |||| || |||||||||||||| | | || | || |||
Sbjct 36325 CG-GCAGATCGATAGTCGCAATGTCGAGGGCACCAACAAGAAATATCTCGACGAGCTGGT 36383
Query 1453 GGACGACTACGGCGAAGACAGCGACTTCGTGAAGGTGCGTGTACGCGGCATCTTCCC 1509
| |||||||| |||||||| |||||||||| || || |||||||| |||||
Sbjct 36384 CACCACCTACGGCGCGGACAGCGATATCGTGAAGGTTCGCGTGCGCGGCATGTTCCC 36440
>seq11405
Length=110570
Score = 123 bits (136), Expect = 7e-24
Identities = 298/449 (66%), Gaps = 13/449 (3%)
Strand=Plus/Plus
Query 32132 CTCCTGCAATTCGTCAGGGGTGTAGACACCCATGATGACGTCAGGGCAATGCAGGCGTGA 32191
|||||||| ||||| | || || || |||| ||| ||||| ||| ||| || |
Sbjct 79567 CTCCTGCAGCTCGTCGGCGGAATACACGCCCAGGATCACGTCGGGGGCGAACAGCCGGGC 79626
Query 32192 CCAGCGCTTTGTCGCCAGGTATGCGAGTTGTTGTTTAGGATCACTGGCCCAAAGAGTGGA 32251
||||||||| || |||||||| || || || || || || ||||| || |||||
Sbjct 79627 CCAGCGCTTCTGGGCGAGGTATGCCAGCTGCTGCTTCGGGTCGTCAGCCCACAGGGTGGA 79686
Query 32252 GTTTCTTACCTGTGCCTGTGACAGTAGCAATTCCAGGACACGTGGTTTATCTTCACCCTT 32311
|| | | ||||||| ||| |||| ||||| ||||| || |||| ||| |
Sbjct 79687 ATTGCGAGTGCGGGCCTGTGCCAGCAGCAGCTCCAGCGTGCGTGGATTGGCTTCGCCCCT 79746
Query 32312 CATCGTGGCCCATACACGCACTCCACAACCTGCTTCATCTTTTAATGTCCATGCTGGAGC 32371
|| || ||||| || || || || |||||| | || || | |||| | ||| |
Sbjct 79747 CAGGGTTGCCCAGACGCGGACACCGCAACCTTCCTCGTCGGCCAGGTTCCAGCCCGGAAC 79806
Query 32372 GATGTAGGTATTA-CCCTTCTGGGATGTTTTCTCTACAAACTTGCCGATCACGTTTTCCC 32430
| |||||| ||||| | | || |||||||||||||| || ||||
Sbjct 79807 GC----GGTATTCGCCCTTGTCCCCCTTCTTGATGGAGAACTTGCCGATCACCTTCTCCC 79862
Query 32431 ACGGTCCGAACCACTCATAGTTGATACGGTCTTTCGTTGGCGACATCG----TGGTGATC 32486
| |||||| |||| || | | || ||||| | || | | || || ||||
Sbjct 79863 AGGGTCCGTACCAGTCGAACTGGAAGCGGTC----GGTGACCAGCCCGCTGTTGTTGATT 79918
Query 32487 ACCGCATTTACCAACTGGGCCTCATAACCGAGAGTGCCGCTAACGACATGAGTTTTCTGC 32546
|| || ||||||||||||||||| || | |||||| | || | || || |||||
Sbjct 79919 ACGGCGGCCACCAACTGGGCCTCATAGCCCAACGTGCCGTTCACCAGGTGGGTCTTCTGG 79978
Query 32547 GCGACTGCGAATGGATTCATACCCCACTG 32575
|| || ||||| || ||||| ||||||||
Sbjct 79979 GCCACGGCGAAGGGGTTCATGCCCCACTG 80007
>seq9916
Length=95639
Score = 86.0 bits (94), Expect = 2e-12
Identities = 138/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 26166 AATTTAACAATTGAAAAGTTGTTATTTTCTACACCTCTGAAT-ATTATTGATGTCATCAA 26224
|||| || ||| || ||||| || | || || || | | || || ||| |||||||||
Sbjct 86028 AATTGAAGAATAGAGAAGTTATTTTCTTGTAGAC-TGTCCATGATGATTTTTGTCATCAA 85970
Query 26225 AAAACCTGAGATAACGaaaaaaaCATCAACTCCAGCAAAACCACCCGGTAAAAAAG-ATG 26283
|||||| || ||||| ||||||||||| |||||| ||| ||| || |||||| | ||
Sbjct 85969 AAAACCAGATATAACAAAAAAAACATCGACTCCAATAAATCCA-CCTGTAAAACCGAATA 85911
Query 26284 GGCTAAAATGGAATACCATAACGGATAAGACCGCAATTGCACGAAGACCATTAATATCTT 26343
| ||||||||| | | || | || || || ||| | | ||||||||||| |
Sbjct 85910 TCCCAAAATGGAAAAGAACTACAAACAAAACTGCGTATGCTCTTAATCCATTAATATCGT 85851
Query 26344 TTCTGAATTTATT 26356
||| ||||| ||
Sbjct 85850 ATCTAAATTTGTT 85838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 133486524919276
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |