Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031077.1 Length=41760 Score E Sequences producing significant alignments: (Bits) Value seq9777 309 8e-80 seq1205 183 8e-42 seq11405 123 7e-24 seq9916 86.0 2e-12 >seq9777 Length=39614 Score = 309 bits (342), Expect = 8e-80 Identities = 432/598 (72%), Gaps = 16/598 (3%) Strand=Plus/Plus Query 920 TCCGGACACGGTATCGGTAAATCAGCGTTTATCTCGATGCTGATCAACTGGGGCATGTCC 979 || || ||||| ||||| || || ||| | | ||||||||||||| |||| | | | Sbjct 25523 TCGGGCCACGGCATCGGCAAGTCCGCGCTGGTGGCGATGCTGATCAAGTGGGCCTTCGAC 25582 Query 980 ACCTGCGAGGACT-GCAAGGTAGTGGTCACCGCGAACACCGACAATCAGTTGCGTACAAA 1038 || | ||| ||| || || || ||||| || |||||||||| ||| |||| || || Sbjct 25583 ACGTTCGAAGACACGCGCGGC-GTCGTCACAGCCAACACCGACATCCAGCTGCGCACGAA 25641 Query 1039 AACATGGCCTGAAATCATCAAGTGGTC-GAACCTTGCTATCACGAAAGAGTGGTTTAC-C 1096 || ||| | ||| | |||||| ||| || |||| || || ||| || | Sbjct 25642 GACCTGGGCGGAACTGTCGAAGTGGCATGAAATCAGCC-TCACCAAGGACTGGGCCACGC 25700 Query 1097 TGCACCGCCACAGCGATGTACAGCAACGATCCGGGACACGATAAACGCTGGCGCGCTGAC 1156 || |||||||| ||| || |||||||| ||||| ||||| || ||||||| ||| Sbjct 25701 TG-ACCGCCACGGCGCTGATCAGCAACGCCCCGGGCCACGACAAGACCTGGCGCATCGAC 25759 Query 1157 GCTATTCCATGGTCTGAGCACAACACTGAAGCATTCGCCGGGCTGCACAACGAGCGCAAG 1216 || | || ||||| || ||||||| || || ||||| || |||||||||||| || | Sbjct 25760 GCGGTGCCGTGGTCGCAGAACAACACCGAGGCGTTCGCAGGCCTGCACAACGAGGGCCGG 25819 Query 1217 CGCATCATCGTGGTATTCGACGAAGCCTCAAACATTGCCGATCTGGTGTGGGAGGTTGCC 1276 |||||| | |||| |||||||| || || ||| ||||| ||||||||| || ||| Sbjct 25820 CGCATCCTGCTGGTGTTCGACGAGGCTTCGGCCATCGCCGACAAGGTGTGGGAAGTGGCC 25879 Query 1277 GAGGGTGCGCTGACGGACGAGGACACCGAAATCATCTGGGTGGCGTTCGGTAACCCGACG 1336 |||||||||||||| ||| ||| |||||| |||||||||| |||||||| ||| | || Sbjct 25880 GAGGGTGCGCTGACCGACCAGGGCACCGAGATCATCTGGGCCGCGTTCGGCAACACCACC 25939 Query 1337 CGTAACACCGGGCGTTTCCGCGAGTGCTTCCGCAAATACCGGCATCGCTGGAAGTGCGCG 1396 || |||||||| || |||||||||||||||||| | | | | ||| | || | Sbjct 25940 CGCAACACCGGCCGGTTCCGCGAGTGCTTCCGCCGGTTCAAGGCCAGTTGGGACACCGAG 25999 Query 1397 CAGATTGACAGCCGCACCGTTGAGGGCACCAAC-----AAAGAGCAACTGCAAAAGTGGG 1451 ||||| |||||||||||||||||||| ||| || | | ||| || Sbjct 26000 CAGATCGACAGCCGCACCGTTGAGGGTGTGAACCTGGTCGAGGCCGAGCGCA-----TGG 26054 Query 1452 TGGACGACTACGGCGAAGACAGCGACTTCGTGAAGGTGCGTGTACGCGGCATCTTCCC 1509 || |||||||||||| ||||||||| | |||||||| ||| | |||||| | ||||| Sbjct 26055 TGCGCGACTACGGCGAGGACAGCGACGTGGTGAAGGTCCGTATCCGCGGCCTGTTCCC 26112 >seq1205 Length=48877 Score = 183 bits (202), Expect = 8e-42 Identities = 403/597 (68%), Gaps = 8/597 (1%) Strand=Plus/Plus Query 917 GCATCCGGACACGGTATCGGTAAATCAGCGTTTATCTCGATGCTGATCAACTGGGGCATG 976 || ||||| ||||||||||| || || || ||||| ||| | | ||| |||| | Sbjct 35848 GCGTCCGGCCACGGTATCGGCAAGTCGGCCGGCATCTCCATGATCAACAAGTGGGCGCTC 35907 Query 977 TCCACCTGCGAGGACTGCAAGGTAGTGGTCACCGCGAACACCGACAATCAGTTGCGTACA 1036 |||||||| ||| | | || ||||||| || ||||| ||| ||| || Sbjct 35908 GACACCTGCGTCGACACCCGCATCGTCATCACCGCCAATACCGAGGGCCAGCTGCTCACC 35967 Query 1037 AAAACATGGCCTGAAATCATCAAGTGGTCGAACCTTGCTATCACGAAAGAGTGGTTTACC 1096 || || |||| || | |||||| || | || || |||| || ||||| | Sbjct 35968 AAGACTGGGCCGGAGCTGGCGAAGTGGGCGCAGCTCGCGGTCACCGGCGACTGGTTCAAG 36027 Query 1097 TGCACCGCCAC-AGCGATGTACAGCAACGATCCGGGACACGATAAACG--CTGGCGCGCT 1153 || ||||| ||| || | || || | ||| || | | | ||||||| | Sbjct 36028 GTCAATGCCACCAGCATCGTGTCG--ACCATGGGCGAC-CGGTCGAAGTCCTGGCGCACC 36084 Query 1154 GACGCTATTCCATGGTCTGAGCACAACACTGAAGCATTCGCCGGGCTGCACAACGAGCGC 1213 ||| | | | ||||| | | ||||||| || || |||||||| ||||| || || || Sbjct 36085 GACCTTGTCACCTGGTCGGCGAACAACACCGAGGCGTTCGCCGGCCTGCATAATCAGGGC 36144 Query 1214 AAGCGCATCATCGTGGTATTCGACGAAGCCTCAAACATTGCCGATCTGGTGTGGGAGGTT 1273 ||||||||| | || | |||||||| || ||| ||| | | |||||||||||| Sbjct 36145 AAGCGCATCGTGCTGATCTTCGACGAGGCGTCAGGCATCATCAACAAGGTGTGGGAGGTC 36204 Query 1274 GCCGAGGGTGCGCTGACGGACGAGGACACCGAAATCATCTGGGTGGCGTTCGGTAACCCG 1333 || || ||||| || |||||||| ||||| ||| | ||| | || ||||| || || Sbjct 36205 GCGCTCGGCGCGCTCACCGACGAGGATACCGAGATCCTGTGGCTCGCCTTCGGCAATCCC 36264 Query 1334 ACGCGTAACACCGGGCGTTTCCGCGAGTGCTTCCGCAAATACCGGCATCGCTGGAAG-TG 1392 || | |||||||| |||||||| |||| |||| |||| | |||||| | Sbjct 36265 ACACTCAACACCGGCTCGTTCCGCGACTGCTATGGCAAGAGCCGGAACATGTGGAAGACG 36324 Query 1393 CGCGCAGATTGACAGCCGCACCGTTGAGGGCACCAACAAAGAGCAACTGCAAAAGTGGGT 1452 || |||||| || || |||| || |||||||||||||| | | || | || ||| Sbjct 36325 CG-GCAGATCGATAGTCGCAATGTCGAGGGCACCAACAAGAAATATCTCGACGAGCTGGT 36383 Query 1453 GGACGACTACGGCGAAGACAGCGACTTCGTGAAGGTGCGTGTACGCGGCATCTTCCC 1509 | |||||||| |||||||| |||||||||| || || |||||||| ||||| Sbjct 36384 CACCACCTACGGCGCGGACAGCGATATCGTGAAGGTTCGCGTGCGCGGCATGTTCCC 36440 >seq11405 Length=110570 Score = 123 bits (136), Expect = 7e-24 Identities = 298/449 (66%), Gaps = 13/449 (3%) Strand=Plus/Plus Query 32132 CTCCTGCAATTCGTCAGGGGTGTAGACACCCATGATGACGTCAGGGCAATGCAGGCGTGA 32191 |||||||| ||||| | || || || |||| ||| ||||| ||| ||| || | Sbjct 79567 CTCCTGCAGCTCGTCGGCGGAATACACGCCCAGGATCACGTCGGGGGCGAACAGCCGGGC 79626 Query 32192 CCAGCGCTTTGTCGCCAGGTATGCGAGTTGTTGTTTAGGATCACTGGCCCAAAGAGTGGA 32251 ||||||||| || |||||||| || || || || || || ||||| || ||||| Sbjct 79627 CCAGCGCTTCTGGGCGAGGTATGCCAGCTGCTGCTTCGGGTCGTCAGCCCACAGGGTGGA 79686 Query 32252 GTTTCTTACCTGTGCCTGTGACAGTAGCAATTCCAGGACACGTGGTTTATCTTCACCCTT 32311 || | | ||||||| ||| |||| ||||| ||||| || |||| ||| | Sbjct 79687 ATTGCGAGTGCGGGCCTGTGCCAGCAGCAGCTCCAGCGTGCGTGGATTGGCTTCGCCCCT 79746 Query 32312 CATCGTGGCCCATACACGCACTCCACAACCTGCTTCATCTTTTAATGTCCATGCTGGAGC 32371 || || ||||| || || || || |||||| | || || | |||| | ||| | Sbjct 79747 CAGGGTTGCCCAGACGCGGACACCGCAACCTTCCTCGTCGGCCAGGTTCCAGCCCGGAAC 79806 Query 32372 GATGTAGGTATTA-CCCTTCTGGGATGTTTTCTCTACAAACTTGCCGATCACGTTTTCCC 32430 | |||||| ||||| | | || |||||||||||||| || |||| Sbjct 79807 GC----GGTATTCGCCCTTGTCCCCCTTCTTGATGGAGAACTTGCCGATCACCTTCTCCC 79862 Query 32431 ACGGTCCGAACCACTCATAGTTGATACGGTCTTTCGTTGGCGACATCG----TGGTGATC 32486 | |||||| |||| || | | || ||||| | || | | || || |||| Sbjct 79863 AGGGTCCGTACCAGTCGAACTGGAAGCGGTC----GGTGACCAGCCCGCTGTTGTTGATT 79918 Query 32487 ACCGCATTTACCAACTGGGCCTCATAACCGAGAGTGCCGCTAACGACATGAGTTTTCTGC 32546 || || ||||||||||||||||| || | |||||| | || | || || ||||| Sbjct 79919 ACGGCGGCCACCAACTGGGCCTCATAGCCCAACGTGCCGTTCACCAGGTGGGTCTTCTGG 79978 Query 32547 GCGACTGCGAATGGATTCATACCCCACTG 32575 || || ||||| || ||||| |||||||| Sbjct 79979 GCCACGGCGAAGGGGTTCATGCCCCACTG 80007 >seq9916 Length=95639 Score = 86.0 bits (94), Expect = 2e-12 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 26166 AATTTAACAATTGAAAAGTTGTTATTTTCTACACCTCTGAAT-ATTATTGATGTCATCAA 26224 |||| || ||| || ||||| || | || || || | | || || ||| ||||||||| Sbjct 86028 AATTGAAGAATAGAGAAGTTATTTTCTTGTAGAC-TGTCCATGATGATTTTTGTCATCAA 85970 Query 26225 AAAACCTGAGATAACGaaaaaaaCATCAACTCCAGCAAAACCACCCGGTAAAAAAG-ATG 26283 |||||| || ||||| ||||||||||| |||||| ||| ||| || |||||| | || Sbjct 85969 AAAACCAGATATAACAAAAAAAACATCGACTCCAATAAATCCA-CCTGTAAAACCGAATA 85911 Query 26284 GGCTAAAATGGAATACCATAACGGATAAGACCGCAATTGCACGAAGACCATTAATATCTT 26343 | ||||||||| | | || | || || || ||| | | ||||||||||| | Sbjct 85910 TCCCAAAATGGAAAAGAACTACAAACAAAACTGCGTATGCTCTTAATCCATTAATATCGT 85851 Query 26344 TTCTGAATTTATT 26356 ||| ||||| || Sbjct 85850 ATCTAAATTTGTT 85838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133486524919276