Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031080.1
Length=160985
Score E
Sequences producing significant alignments: (Bits) Value
seq7823 89.7 5e-13
seq13424 86.0 6e-12
seq9683 86.0 6e-12
seq9026 86.0 6e-12
seq10635 84.2 2e-11
>seq7823
Length=199163
Score = 89.7 bits (98), Expect = 5e-13
Identities = 90/117 (77%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 121526 ACCTACGGCATCTTGGTCTACCAGGAACAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 121585
||||||||| || | ||||| ||||||||| |||| | | |||| || ||||| ||
Sbjct 170358 ACCTACGGCGTCATCGTCTATCAGGAACAGGTGATGCAGATCGCCCAGATCCTGGCGGGC 170299
Query 121586 TTCACTCCGGGCGAGGCCGAGCGTCTGCGCAAGGGCATCGGCAAGAAGAAGATGGAG 121642
| || | |||||||||||| | |||||| || ||| ||||||||||||| ||||
Sbjct 170298 TACAGCCTGGGCGAGGCCGACCTGCTGCGCCGGGCCATGGGCAAGAAGAAGAAGGAG 170242
>seq13424
Length=92847
Score = 86.0 bits (94), Expect = 6e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 95715 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 95774
||||| |||| |||| ||| || |||| || ||||||| || |||||||||||||||||
Sbjct 91478 CGGGGAGTAGCGCAGTCTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCGAA 91419
Query 95775 TCCTGTCACCCCGAC 95789
||||||| |||||||
Sbjct 91418 TCCTGTCTCCCCGAC 91404
>seq9683
Length=137075
Score = 86.0 bits (94), Expect = 6e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 121526 ACCTACGGCATCTTGGTCTACCAGGAACAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 121585
|||||||| ||| ||||||||||||| ||| |||| | |||||| ||| ||||| |||
Sbjct 110407 ACCTACGGGATCATGGTCTACCAGGAGCAGGTGATGCAGACCGCCCAGGTGCTGGGCGGC 110466
Query 121586 TTCACTCCGGGCGAGGCCGAGCGTCTGCGCAAGGGCATCGGCAAGAAGAAGATGGAG 121642
| | | | ||||| ||||| | ||||| | ||| |||||||||||| | |||
Sbjct 110467 TACTCGCTGGGCGGCGCCGACCTCTTGCGCCGTGCCATGGGCAAGAAGAAGGTCGAG 110523
>seq9026
Length=54586
Score = 86.0 bits (94), Expect = 6e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 121526 ACCTACGGCATCTTGGTCTACCAGGAACAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 121585
||||||||| || | ||||| ||||||||| |||| | | |||| || ||||| ||
Sbjct 20969 ACCTACGGCGTCATCGTCTATCAGGAACAGGTGATGCAGATCGCCCAGATTCTGGCGGGC 20910
Query 121586 TTCACTCCGGGCGAGGCCGAGCGTCTGCGCAAGGGCATCGGCAAGAAGAAGATGGAG 121642
| || | |||||| ||||| | ||||||| | ||| ||||||||||||| ||||
Sbjct 20909 TACAGCCTGGGCGAAGCCGACCTTCTGCGCCGCGCCATGGGCAAGAAGAAGAAGGAG 20853
>seq10635
Length=172665
Score = 84.2 bits (92), Expect = 2e-11
Identities = 84/107 (79%), Gaps = 4/107 (4%)
Strand=Plus/Plus
Query 120505 CTACGTCATGGGCATCACCTCGATCGATCC--GATCAAGTACGACCTGATGTTCGAGCGC 120562
|||||| | |||||||||||||||||||| || | |||||||| |||||||||||
Sbjct 10883 CTACGTTCTCGGCATCACCTCGATCGATCCCGGACGCA--ACGACCTGTTGTTCGAGCGC 10940
Query 120563 TTCATCAACCCGGATCGCCCCGACTTTCCCGACATCGACGTCGACTT 120609
||| ||| | || |||| ||| ||||||||||||||||| ||
Sbjct 10941 TTCGTCAGCGAAGAGCGCCGCGAGCCGCCCGACATCGACGTCGATTT 10987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 514927053169800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |