Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031080.1 Length=160985 Score E Sequences producing significant alignments: (Bits) Value seq7823 89.7 5e-13 seq13424 86.0 6e-12 seq9683 86.0 6e-12 seq9026 86.0 6e-12 seq10635 84.2 2e-11 >seq7823 Length=199163 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 121526 ACCTACGGCATCTTGGTCTACCAGGAACAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 121585 ||||||||| || | ||||| ||||||||| |||| | | |||| || ||||| || Sbjct 170358 ACCTACGGCGTCATCGTCTATCAGGAACAGGTGATGCAGATCGCCCAGATCCTGGCGGGC 170299 Query 121586 TTCACTCCGGGCGAGGCCGAGCGTCTGCGCAAGGGCATCGGCAAGAAGAAGATGGAG 121642 | || | |||||||||||| | |||||| || ||| ||||||||||||| |||| Sbjct 170298 TACAGCCTGGGCGAGGCCGACCTGCTGCGCCGGGCCATGGGCAAGAAGAAGAAGGAG 170242 >seq13424 Length=92847 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 95715 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 95774 ||||| |||| |||| ||| || |||| || ||||||| || ||||||||||||||||| Sbjct 91478 CGGGGAGTAGCGCAGTCTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCGAA 91419 Query 95775 TCCTGTCACCCCGAC 95789 ||||||| ||||||| Sbjct 91418 TCCTGTCTCCCCGAC 91404 >seq9683 Length=137075 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 121526 ACCTACGGCATCTTGGTCTACCAGGAACAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 121585 |||||||| ||| ||||||||||||| ||| |||| | |||||| ||| ||||| ||| Sbjct 110407 ACCTACGGGATCATGGTCTACCAGGAGCAGGTGATGCAGACCGCCCAGGTGCTGGGCGGC 110466 Query 121586 TTCACTCCGGGCGAGGCCGAGCGTCTGCGCAAGGGCATCGGCAAGAAGAAGATGGAG 121642 | | | | ||||| ||||| | ||||| | ||| |||||||||||| | ||| Sbjct 110467 TACTCGCTGGGCGGCGCCGACCTCTTGCGCCGTGCCATGGGCAAGAAGAAGGTCGAG 110523 >seq9026 Length=54586 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 121526 ACCTACGGCATCTTGGTCTACCAGGAACAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 121585 ||||||||| || | ||||| ||||||||| |||| | | |||| || ||||| || Sbjct 20969 ACCTACGGCGTCATCGTCTATCAGGAACAGGTGATGCAGATCGCCCAGATTCTGGCGGGC 20910 Query 121586 TTCACTCCGGGCGAGGCCGAGCGTCTGCGCAAGGGCATCGGCAAGAAGAAGATGGAG 121642 | || | |||||| ||||| | ||||||| | ||| ||||||||||||| |||| Sbjct 20909 TACAGCCTGGGCGAAGCCGACCTTCTGCGCCGCGCCATGGGCAAGAAGAAGAAGGAG 20853 >seq10635 Length=172665 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/107 (79%), Gaps = 4/107 (4%) Strand=Plus/Plus Query 120505 CTACGTCATGGGCATCACCTCGATCGATCC--GATCAAGTACGACCTGATGTTCGAGCGC 120562 |||||| | |||||||||||||||||||| || | |||||||| ||||||||||| Sbjct 10883 CTACGTTCTCGGCATCACCTCGATCGATCCCGGACGCA--ACGACCTGTTGTTCGAGCGC 10940 Query 120563 TTCATCAACCCGGATCGCCCCGACTTTCCCGACATCGACGTCGACTT 120609 ||| ||| | || |||| ||| ||||||||||||||||| || Sbjct 10941 TTCGTCAGCGAAGAGCGCCGCGAGCCGCCCGACATCGACGTCGATTT 10987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514927053169800