Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq7642 145 2e-30 seq11405 125 2e-24 seq7423 125 2e-24 >seq7642 Length=832695 Score = 145 bits (160), Expect = 2e-30 Identities = 305/446 (68%), Gaps = 13/446 (3%) Strand=Plus/Minus Query 9973 GCGCTGGTGCTCGGATGGCTTCGAATTCCGCTGCGACGACGGTGCGAAACTGAGCGTGAC 10032 |||||||||||| || |||||||| || |||||||| |||| | || | |||| | Sbjct 819624 GCGCTGGTGCTCCGACGGCTTCGAGATCGGCTGCGACAACGGCGAAAAGGTTCGCGTCGC 819565 Query 10033 CTTTGCCCTGGACTGCTGTGATCGCGAAGCCATCGGCTGGGTGGCCAGC-CCGACCGGCT 10091 ||| || || || ||||| || || |||||||| ||| | |||| | |||| ||| Sbjct 819564 CTTCGCGCTCGATTGCTGCGACCGGGAAGCCATGGGCCATATCGCCACCACCGAG-GGCA 819506 Query 10092 ACAGCGGCGATGACATACGCGACTTGATGCTGGAAAGCGTGGAGAAGCGTTTTGGCGACC 10151 || ||||| || | ||||| | ||| | ||| ||| | || || ||| | Sbjct 819505 TCAAAGGCGAGGATGTGTGCGACCTCATGGTCACCGCCGTCGAGCACCGCTTCGGCAAGG 819446 Query 10152 T--AC----TGCCGACCACACCGGTGCAATGGCTAAGCGATAACGGTTCGGCCTACATCG 10205 | || ||||| || ||| | ||||||| | ||||||||| || || ||||| Sbjct 819445 TCAACCGCTTGCCG--CAGACCATCG-AATGGCTGACCGATAACGGCTCCTGCTTCATCG 819389 Query 10206 CTGAACAGACGCGCCTGTTTGCTCGACAGATTGGCCTACAGCCAGTGACCACGCCGGTAC 10265 | | | ||| || | ||||| || |||| || || | || | ||||| ||||| | Sbjct 819388 CAGGTCCGACCCGGCGCTTTGCCCGCGAGATCGGTCTGGAACCGCTCACCACCCCGGTCC 819329 Query 10266 GCAGCCCGCAGAGCAACGGCATGGCAGAGAGCTTCGTTAAGACAATCAAGCGCGACTACG 10325 ||||||||||||||||||||||| || |||||| || |||||||||| |||| Sbjct 819328 AGAGCCCGCAGAGCAACGGCATGGCCGAAGCCTTCGTGCGCACCTTCAAGCGCGATTACG 819269 Query 10326 TGGCGCACATGCCCAAGCCGGATCGAGAGACAGCCTTGCGCAACCTGAC-GATTGCCTTC 10384 | ||| | |||| |||||| | || | | ||| | |||| | || || ||| Sbjct 819268 TCGCGGTGAATCCCATCCCGGATGCCAAAACCGTCATGCTCGCCCTGCCGGAATG-GTTC 819210 Query 10385 GAGCATTACAACGAGCAGCATCCGCA 10410 || || |||||||||| || ||||| Sbjct 819209 GACCACTACAACGAGCTTCACCCGCA 819184 >seq11405 Length=110570 Score = 125 bits (138), Expect = 2e-24 Identities = 196/269 (73%), Gaps = 15/269 (6%) Strand=Plus/Minus Query 9414 CACTGGCGCAAGCTTTACCAGGACGGAAGTTTGTCGGCGGTCAGCGCCGGTGAAGCCGTG 9473 || ||||||||||| | | | || |||| | || ||| ||| || || || || Sbjct 68344 CAGTGGCGCAAGCTCGAACGCCAGGGTGCTTTGACCGCCGTCTCCGCTGGCGAGGCAGTC 68285 Query 9474 GTGCCTGCGTCCGAGTTGAGCGATGCGCTCAGGCAGAT-TCGTGA-GCTACAACGGATGC 9531 ||||| || |||||| || | ||| | | ||||| ||| | ||| || || ||| Sbjct 68284 GTGCCGGCATCCGAGCTGGCGGCTGCACGC--GCAGAAATCGCCAAGCTGCAGCGCGTGC 68227 Query 9532 TGGGCAAGAAGACGATGGAAGCCGAAGTCCTCAAAGAGGCCGTGGAGATAGCCCGCTCGC 9591 | ||||||||||| |||| |||| ||||||| || ||||||||| || || |||| Sbjct 68226 TCGGCAAGAAGACCTTGGAGAACGAAATCCTCAAGGAAGCCGTGGAG-TA---CG-TCGC 68172 Query 9592 -GAAAA---TGGATTGCGCACTCACCCTTGTTGCCGGGGGACGGTCAGTG-AAACTGGTC 9646 ||||| |||||||||| ||| ||||||||||| ||||||| ||||| ||||||||| Sbjct 68171 AGAAAAAAGTGGATTGCGCGCTCGCCCTTGTTGCCCGGGGACGACCAGTGAAAACTGGTC 68112 Query 9647 AGTGAATGTCTCGGTGTGGCGCGCTCGCA 9675 | | ||| | || ||||||||||||| Sbjct 68111 TGCGGATG-ATGGGGCTGGCGCGCTCGCA 68084 >seq7423 Length=35588 Score = 125 bits (138), Expect = 2e-24 Identities = 164/218 (75%), Gaps = 12/218 (6%) Strand=Plus/Minus Query 10238 GGCCTACAGCCAGTGACCACGCCGGTACGCAGCCCGCAGAGCAACGGCATGGCAGAGAGC 10297 ||||| |||| | | |||||| || ||||||| ||||||||||||||||| |||||| Sbjct 17796 GGCCTGAAGCCCATCAACACGCCCGTCTGCAGCCCACAGAGCAACGGCATGGCCGAGAGC 17737 Query 10298 TTCGTTAAGACAATCAAGCGCGACTACGTGGCGCACATG--CCCAAGCCGGATCGAG-AG 10354 ||||| || || ||||||||||||| ||||||| | || || ||| || || | || Sbjct 17736 TTCGTCAACACCGTCAAGCGCGACTATGTGGCGCGCCTGGACCGAAG--TGA-CGCGCAG 17680 Query 10355 ACAG-CCTTGCGCAACCTGACGATTGCCTTCGAGCATTACAACGAGCAGCATCCGCA--C 10411 || | || |||||| ||| | ||||||||||| | ||||||| ||||||||| | Sbjct 17679 ACGGTACTGGCGCAA-CTGCCAGCGGCCTTCGAGCACTTCAACGAGGTGCATCCGCATTC 17621 Query 10412 AGCGCCTTGAAATACCGCTCGCCGAGGGAATTCAGGCG 10449 ||| ||||| || ||||| |||| |||||||| Sbjct 17620 TTCGC--TGAAAATGCGGTCGCCTCGGGAGTTCAGGCG 17585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138340056828162