Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031098.1 Length=40749 Score E Sequences producing significant alignments: (Bits) Value seq14976 1276 0.0 seq8686 235 1e-57 seq449 235 1e-57 seq1918 228 2e-55 seq8226 210 6e-50 seq8225 206 7e-49 seq10131 185 2e-42 seq9034 163 7e-36 seq7305 145 2e-30 seq6169 131 4e-26 seq8065 127 5e-25 seq376 127 5e-25 seq12839 113 1e-20 >seq14976 Length=24186 Score = 1276 bits (1414), Expect = 0.0 Identities = 1327/1731 (77%), Gaps = 12/1731 (1%) Strand=Plus/Minus Query 1 ATGGCAAAACTCACTGAACCTATGAAAATCTTTATAGTTCAAAGTCTTGCTTGTTTTGAA 60 ||||||| ||| | || ||| ||||||||||||||||||| ||||||||| |||||| Sbjct 19240 ATGGCAACACTTAAAGAGCCTGTGAAAATCTTTATAGTTCAGTCTCTTGCTTGCTTTGAA 19181 Query 61 ACACCTCAACAAGTCGCTGACTCTGTAA-AGAATACTTTCAAGGT--TGAGATCGAAAGA 117 || ||||||||||| | || |||||| |||| | ||| ||| ||| || ||| | Sbjct 19180 ACCCCTCAACAAGTTGTAGATGCTGTAAGAGAAGAATTT---GGTATTGAAATTGAACGG 19124 Query 118 ATGCAATGTGCAAATTACGATCCAACCAAACCAACTGGCGAAAAAATGAGTCAGAAACTA 177 |||| ||| || |||||||| ||| |||| || | ||||||| |||| || Sbjct 19123 CAGCAAGTTGCCTCATATGATCCAACAAAAGCAACATGCAGAGGAATGAGTAAGAAGCTT 19064 Query 178 AAGG-ACTTGTTTTACAGAACACGAGAAGATTTTAAATCCAATATCTATGACATCCCATT 236 ||| |||| || ||| | |||| ||| |||| || ||||| |||||||| ||||| Sbjct 19063 AAGACACTTTTTGAACATA-CACGCGAACATTTCAAGAAAAATATATATGACATTCCATT 19005 Query 237 AGCTAATAAGGCTGTCCGCCTCAATGAGCTTCAGAAAATGTATGAAGATTGGGGTAAGAA 296 ||| ||||| || || ||||| ||||| || || || ||||||| |||||| || || Sbjct 19004 AGCCAATAAAGCGGTACGCCTTAATGAACTCCAAAAGATGTATGTCGATTGGAAGAATAA 18945 Query 297 TAAAATCATGAAGCAAGGAATCATCAAACAGATTAAAGATGAAATGCATGGACATGATTT 356 |||| | | || || | ||||| |||||| |||| |||||||||||||| |||| | Sbjct 18944 TAAAGTAAAAAAACAGAGCATCATTAAACAGGTTAAGGATGAAATGCATGGTTATGAAAT 18885 Query 357 ACAGCTATTAGATCTTGAATTGAAGAAATTAGAAATTCAGCGATTGAGAGATGGCGAGGA 416 || |||||||| | | || | | ||||| | || | | | | || || | Sbjct 18884 TCAATTATTAGATGAGCAGCTTAAACAGCTTGAAATAGACAGAATTAAAAACGGAGATGG 18825 Query 417 TGGTGCTGGTGATGATCCAACACCTGTAAATGTCACTATTCATGTTGTAGATGCGAGTAA 476 || | | ||||||||| ||||| ||||| || |||||||| ||||| ||||||||||| Sbjct 18824 TGAAGGCGCTGATGATCCTACACCAGTAAAAGTAACTATTCAGGTTGTTGATGCGAGTAA 18765 Query 477 AAAAGATGCCGAACATCAATCCAACACTGAATGTGCCTCAGGCTAACTTCCTACAATTAC 536 | || ||||||||||| ||||| || |||||||| ||||||||||| || ||| | | Sbjct 18764 AGAAAATGCCGAACATAAATCCGACGCTGAATGTACCTCAGGCTAATTTTCTAAAGCTCA 18705 Query 537 CAAATAAATTTAGAGCGTTCGTTGCTGGGTTTGGTTCAGGTAAAACATGGGTTGGTTGTT 596 |||||| ||| | || || || || || ||||| || |||||||| ||||| || |||| Sbjct 18704 AAAATAAGTTTCGTGCATTTGTCGCAGGATTTGGATCTGGTAAAACTTGGGTGGGCTGTT 18645 Query 597 CAAGTCTTTGTGATAAGTCTTGGTCTTTCCCTAAAGTTCCGTTGGGTTACTTTGCTCCAA 656 | ||||||||||||||||||||| || || ||||| || ||||| |||||||| |||| Sbjct 18644 CGAGTCTTTGTGATAAGTCTTGGGAATTTCCGAAAGTACCTTTGGGCTACTTTGCACCAA 18585 Query 657 CGTATCCGCAGATCCGAGATATCTTTTTCCCTACGATTGATGAAGTAGCTTTCGATTGGG 716 | ||||| ||||| |||||||| || || ||||| || |||||||| ||||| || |||| Sbjct 18584 CCTATCCTCAGATACGAGATATTTTCTTTCCTACCATAGATGAAGTTGCTTTTGACTGGG 18525 Query 717 GATTGAAGACAAAGATCTATGAATCTAACAAAGAAGTTGATCTTTACTATGGCCGCCAAT 776 | | ||||| ||||| ||||| || || || ||||||||| |||||||||| ||||||| Sbjct 18524 GCCTTAAGACTAAGATTTATGAGTCAAATAAGGAAGTTGATATTTACTATGGTCGCCAAT 18465 Query 777 ATCGAAGCACAATTATTTGCCGATCAATGGAAAAGCCCAATACTATTGTAGGTTTTAAGA 836 | |||| ||| |||||||||| |||||||||||||| | || ||||| |||||||| | Sbjct 18464 ACAGAAGTACAGTTATTTGCCGTTCAATGGAAAAGCCTCAAACAATTGTTGGTTTTAAAA 18405 Query 837 TTGGTCATGCGCTGATTGATGAGCTTGATGTGATGACAAAGGTCAAGGCTCAACAAGCTT 896 ||||||||| ||| |||||||| |||||||| ||| | | | | ||||| |||||||| | Sbjct 18404 TTGGTCATGGGCTAATTGATGAACTTGATGTCATGCCTACGCTTAAGGCACAACAAGCAT 18345 Query 897 GGCGTAAGATCATTGCTCGTATGCGATATAAACAAGCTGGTTTGTTGAACGGTATTGATG 956 |||| || ||||||||||||||||| ||||| ||||| ||||| | || |||||||||| Sbjct 18344 GGCGAAAAATCATTGCTCGTATGCGTTATAAGCAAGCGGGTTTAATCAATGGTATTGATG 18285 Query 957 TTGCAACAACGCCAGAGGGCTTTAAGTTCACTCATGAGCAATTTGTCAAAGAAGCAAAC- 1015 | || || || || ||||| ||||| || || ||||| || ||||| ||||| || ||| Sbjct 18284 TGGCCACCACACCTGAGGGATTTAAATTTACACATGAACAGTTTGTAAAAGAGGCTAACT 18225 Query 1016 CAA-AGCGAGGCTAAGCGCGCTCTATATGGAATGATTCAAGCTTCCACCTATGATAATGA 1074 ||| | | | || || || || || ||||||||||| ||||| ||||| |||||||| Sbjct 18224 CAACACCTCAG--AAACGAGCACTTTACGGAATGATTCAGGCTTCAACCTACGATAATGA 18167 Query 1075 AGCCAATCTTCCTGATGACTACATTGCATCATTGTTTGAGTCTTACCCACCTCAATTGAT 1134 ||| ||| | |||||||| || ||| | || || || ||||| || |||||||| | || Sbjct 18166 AGCAAATTTACCTGATGATTATATTTCTTCGTTATTCGAGTCCTATCCACCTCAGCTCAT 18107 Query 1135 TTCAGCCTACTTAAAAGGGCAATTCGTAAATTTAACGAGTGGGGCTGTATATCCAGACTT 1194 ||| || || ||||||||||| |||||||| ||||| ||||| ||||||||||| || || Sbjct 18106 TTCTGCATATTTAAAAGGGCAGTTCGTAAACTTAACTAGTGGCGCTGTATATCCTGATTT 18047 Query 1195 CGACCGGACCTTAAACCATACAGATGAGGAAATAAGACCTAATGAGGCTTTACTCATTGG 1254 || || | ||||| ||||| |||| || || |||||||||||| ||||||||||||| Sbjct 18046 TGATCGAAAATTAAATCATACCAATGAAGAGATTAGACCTAATGAGTCTTTACTCATTGG 17987 Query 1255 TATGGACTTCAACGTCTTGAAGATGGCAGCTGTTGTTTATGTGATTCGAGATGGCAAGCC 1314 ||||||||| ||||| ||||| ||||| || || ||||||| || || ||||| ||||| Sbjct 17986 TATGGACTTTAACGTTTTGAAAATGGCTGCAGTAATTTATGTCATACGTGATGGTAAGCC 17927 Query 1315 AAGAGCTTTAGATGAGTTGGTCGGTGTGCGTGATACGCCAACAATGGCCGATCTATTAAT 1374 ||| || || ||| |||| || ||| | ||||| ||||||||||| || | || Sbjct 17926 CCTAGCATTGGACGAGATGGTTGGAGTGAGAGATACACCAACAATGGCAACATTACTTAT 17867 Query 1375 TGAAAAGTTCCCAAACCATGAGATGACAGTTATCCCTGATGCGGCAGGCCAAGCTACTTC 1434 ||| || ||| ||||| |||||||| || |||||||| ||||| ||| |||| || Sbjct 17866 TGAGCGCTTTCCATTTCATGAAATGACAGTAATTCCTGATGCAGCAGGGCAATCTACATC 17807 Query 1435 ATCAAAAAAGAGTAGCGAATCTGATCATGCAATCTTGAGACAGAAGGGCTTAAGGGTCGA 1494 ||| ||||| || || || || ||||| ||| || || | ||||| || ||| | || Sbjct 17806 ATCTAAAAATAGCAGTGAGTCAGATCACCAAATTTTACGAGATAAGGGTTTTAGGATTGA 17747 Query 1495 AGTCAATTCAACAAACCCGAACATTAAAGACCGAATTAATGCAGTAAATGCTTTGATCTT 1554 ||| || || |||||| |||||||| || ||||| |||||||||||| |||| | Sbjct 17746 AGTGGATGGAATAAACCCTGCAATTAAAGATCGGATTAACGCAGTAAATGCTCTGATTCT 17687 Query 1555 AAATGGCAATGGTGAGCGAACACTCTTAGTCAATACAAATAAATGCCCAAGACTCACAGA 1614 |||| | |||||||||||||| ||| ||||| || |||||||| | | ||||| Sbjct 17686 TAATGCAGAGGGTGAGCGAACACTTAAAGTAAATACCAACAAATGCCCCCGTTTTACAGA 17627 Query 1615 GACCTTTGAGCAGCAAGTTTATGACGATTTTGGAATGCCAGATAAGAAATCAGGCTTGGA 1674 || | || |||||| ||||||| |||||||||||||| ||||| |||||||| || || Sbjct 17626 AACGCTAGAACAGCAAATTTATGATGATTTTGGAATGCCGGATAAAAAATCAGGTTTAGA 17567 Query 1675 CCATGTCGGAGATGCTGGCGGATATCCTCTCGCCAAACGTTTCCCAATTAT 1725 ||||| ||||||||||| || ||||| | || || || ||||| ||||| Sbjct 17566 TCATGTAGGAGATGCTGGTGGTTATCCATTAGCAAAGCGATTCCCGATTAT 17516 >seq8686 Length=99304 Score = 235 bits (260), Expect = 1e-57 Identities = 234/299 (78%), Gaps = 3/299 (1%) Strand=Plus/Minus Query 22611 GCTTTTTTATTGCCGAAATTAGGGGGAAGGCATGGAATTTTGGAAATTCATTCAAGAGTT 22670 |||||||||||||| || | ||||| ||||||||||||||||||| |||||||| | Sbjct 25754 GCTTTTTTATTGCCTTAAATCGGGGGT-GGCATGGAATTTTGGAAATGGTTTCAAGAGCT 25696 Query 22671 TCT-ACAGACTTTTGGCACAGCAATCACTTCATTTTTTATGGGGTTCATTATGGCTTATT 22729 | ||| |||||||| || |||||||||||||||||||||||||| | |||||||||| Sbjct 25695 GATTACA-ACTTTTGGAACTGCAATCACTTCATTTTTTATGGGGTTTGTCATGGCTTATT 25637 Query 22730 TCCGAACGAAGAAAAAACTAGGTAAGGCTGATTGGGCTGAGTCCATTATGTGTGGGCTTT 22789 | |||||||| || || || || | |||| || ||||| || |||||||| |||| Sbjct 25636 TACGAACGAAAAAGAAGGCTGGCAAAGGAGATTTCGCAGAGTCAATCATGTGTGGTCTTT 25577 Query 22790 TTTCAGTTGGTGTCTGGTCTTTACTTGAATGGCTAAATGTCCCACAGATTGTATCTGTTG 22849 || | |||||||| ||| | || | || ||| | || | || || |||||| |||| | Sbjct 25576 TTGCCGTTGGTGTTTGGACGTTTTTAGAGTGGATGCATATTCCGCAAATTGTAGCTGTCG 25517 Query 22850 GTATTGCTTCTGGCATTGGGTATATGGGCACTCATTTTGTCAGTAACTTAATTGAAAAG 22908 | | || ||||| || || |||||||| ||||||||||| ||||| ||||||||||| Sbjct 25516 GGCTGGCGTCTGGTATCGGTTATATGGGTACTCATTTTGTGAGTAATCTAATTGAAAAG 25458 >seq449 Length=15283 Score = 235 bits (260), Expect = 1e-57 Identities = 447/647 (69%), Gaps = 37/647 (6%) Strand=Plus/Plus Query 8519 AATCACACAACAAACCTGATCTACTTTTAACCGAACCTGTCCTTAGTGGCAGGttttttt 8578 |||||||||||||| || | | | | || |||| | |||| |||||||| Sbjct 8293 AATCACACAACAAAGCTTAACCA-----ACCCTGACCTTTAATTAGATCAGGGTTTTTTA 8347 Query 8579 ATGCCTGAAATTCAGGCGAACA--CTGGCTAGGTTGATCCCCGAAA-AGCACACTTTTCA 8635 ||||||||||| ||| || | | ||||| | |||||| | | |||||| Sbjct 8348 ATGCCTGAAATAT-GGCATGCAAGCCGACTAGGGTAGCTCCCGAAGTAATGTATTTTTCA 8406 Query 8636 TGTTCAGTGCGCCTGCCAGTTCTTTTCTTT-GAACATGAGCGAGTAAGAGGAAA-TCTTA 8693 |||||| ||| || | | |||||||||| |||||||| ||||||||||| ||||| Sbjct 8407 TGTTCAATGCATTTGTCGGCTCTTTTCTTTTGAACATGATTTTGTAAGAGGAAAATCTTA 8466 Query 8694 TGAACATGATGACAACATTAAATTTACGTGCATTGGTTACCAATGATAACGGTGAA-CCA 8752 ||||||||||| | ||||||||| | | |||| ||||| | || || ||| ||| Sbjct 8467 TGAACATGATGTTGAATTTAAATTTAAGAGGTATGGTCTCCAATCAAAATGGGGAAGCCA 8526 Query 8753 AGAACAACAAGTTATGCCGTTGCTGAAGCTTTTAACAAGACTCACAGCCATGTAATGCGA 8812 ||| |||| ||||| || || ||||| || || ||| || ||||| ||||| Sbjct 8527 AGA-CAACCAGTTACGCTGTGGCTGAGGCGTTCGGTAAGCGGCATTCTGATGTACTGCGA 8585 Query 8813 GATATTAAGAAAATCATTAAGCAATGTGGTGAAGAATTTGCTAAATCCAATTTTGGATTA 8872 ||||| || || | ||||| || ||||| | || |||||||| || Sbjct 8586 TCAATTAAAAATATGA------AATGTTCGCAAAAATTTCGTGAACGCAATTTTGCGTTT 8639 Query 8873 ACCTTTGAAAACAAAAGGATAGGGAACACAGAGCGTAAAACACCATTCTTTAGAATTTCA 8932 ||||| ||||||||| |||||||||||| ||||| | || || | | ||| Sbjct 8640 ACCTTAGAAAACAAACAGATAGGGAACAC------TAAAAGAA-ATACTGGTTATTATCA 8692 Query 8933 AAAGA-------TGGATTCATGTTGCTTGTTATGGGTTTCACTGGCGAAAAGGCTATGAA 8985 | || |||||| ||||| | |||||||| || | ||| ||||| ||| Sbjct 8693 CATGACTGAGCGTGGATTTATGTTTTTAGTTATGGGATTTAATGGTGAAAAAGCTGACGC 8752 Query 8986 AACTAAA--ATCGAATTTATTAATGCCTTTAACTGGATGGCTAATCAACTCAGCCAAGTT 9043 || |||| ||| |||||| |||| ||| | |||||||| |||||| | | |||| | Sbjct 8753 AATTAAAGAATCC--TTTATTGATGCATTTGAATGGATGGCGAATCAATTAACCCAAATA 8810 Query 9044 TTCCAATCAAAATGGGCTAGATACAACCATGTTGTAGGTTACCGTGAAAGTCGTAAGCAA 9103 |||||||||||||||||| | ||| | || ||| ||||| || || | | |||||| Sbjct 8811 TTCCAATCAAAATGGGCTCGTTACCAACAGCGTGTTGGTTATCGAGACAAGAGAAAGCAA 8870 Query 9104 CAAGTTAGTTGTTCAGCCCGTGACATGAACACTTGGAAGCATGAGAA 9150 | |||||||| |||||||| || ||||| | ||||||||||| || Sbjct 8871 GAGGTTAGTTGCTCAGCCCGAGATATGAATGCATGGAAGCATGAAAA 8917 >seq1918 Length=3315 Score = 228 bits (252), Expect = 2e-55 Identities = 170/199 (85%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 29574 TTAATTTTCTGGCCTAGCTTTCCTTCTTTTACCAACTGCACGACCTGCTCATTAGTAAGC 29633 ||||| || || || ||||| ||||| || |||| ||| | || |||||||| |||||| Sbjct 831 TTAATCTTTTGCCCAAGCTTACCTTCGTTGACCAGCTGTATAACTTGCTCATTTGTAAGC 772 Query 29634 ACAGGAATAAAGACTTTGTCGCCAATATCTTTGGAAAGAATCTTCACTTCTTCGGCTGTT 29693 ||||| || || |||||||| ||||||||||| ||||||||||| ||||| || |||||| Sbjct 771 ACAGGTATGAAAACTTTGTCACCAATATCTTTAGAAAGAATCTTGACTTCATCAGCTGTT 712 Query 29694 AGCACCAAAGCTTCACCATGTTTCGCAGCATCATTGATGCGAGCAATAATCTGATTGATT 29753 |||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| | | Sbjct 711 AGCATCAATGCTTCACCATGTGTCGCAGCATCATTGATGCGAGCAATAATCTGATTAACT 652 Query 29754 GGTAGTTTTGCGTTATCCA 29772 ||||||||| ||| |||| Sbjct 651 GGTAGTTTTAAGTTGTCCA 633 >seq8226 Length=5263 Score = 210 bits (232), Expect = 6e-50 Identities = 278/380 (73%), Gaps = 12/380 (3%) Strand=Plus/Plus Query 22934 ACAAGCAATTCTGGGCTGAAACTCATCAAAGACTTTGAGGGCAAGCGCCTTAATGCGTAT 22993 ||||| || || || | || || ||||||| || ||||| || ||| | || || ||| Sbjct 1135 ACAAGTAACTCAGGAATCAATCTAATCAAAGGTTTCGAGGGTAAACGCTTGAAAGCCTAT 1194 Query 22994 GATGATGGGGTGGGTGTTTGGACTATTGGTTTTGGAACCATTAAGTATCCGAATGGTGTC 23053 || ||||| ||||| ||||||| ||||| ||||| || ||||| |||||||||||||| Sbjct 1195 GACGATGGTGTGGGCATTTGGACCATTGGATTTGGCACAATTAAATATCCGAATGGTGTG 1254 Query 23054 CGAGTGAAAAAAGGTGATACCTGCACTGAACAGCAAGCTGAAACCTATTTGAAAAATGAT 23113 || || |||||||| ||||| ||||||||| ||||| ||| ||| | |||||| Sbjct 1255 CGTGTCAAAAAAGGGGATACATGCACTGAATCTCAAGCAGAACAATATCTTCGCAATGAT 1314 Query 23114 TTA--ACTAAGTTTGAAGTAGCTATTAATAAATTAGTTAAAGTGCCTCTTAGTCAGAATC 23171 ||| | || |||||| ||||| ||| || || |||||||| || | ||| || | Sbjct 1315 TTAGTAGTA--TTTGAAAACGCTATCAATCGTTTGGTGAAAGTGCCACTCAATCAAAACC 1372 Query 23172 AATTCGATGCACTAGCATCTTTCACATATAATCTTGGTGAAACCAAT-TTAGCAAATTCA 23230 |||||||||| |||| || ||||| ||||| | |||||| |||| |||||||| ||| Sbjct 1373 AATTCGATGCTTTAGCTTCATTCACTTATAACTTGGGTGAAGGCAATCTTAGCAAA-TCA 1431 Query 23231 ACTTTATTGAAGAAACTTAAT---AAAGGTGACTATCAAGGCGCTGCTGACCAATTCCTT 23287 ||| | | || || || ||| ||| |||||| |||| ||||| | |||| | | Sbjct 1432 ACTCTGCTTAAAAAGCTAAATGCCAAA---GACTATAAAGGTGCTGCAGCTGAATTTCCT 1488 Query 23288 GTCTGGAATAAGGCAGGAGG 23307 ||||| || || || || Sbjct 1489 AAATGGAACAAAGCTGGTGG 1508 >seq8225 Length=74308 Score = 206 bits (228), Expect = 7e-49 Identities = 275/378 (73%), Gaps = 8/378 (2%) Strand=Plus/Plus Query 22934 ACAAGCAATTCTGGGCTGAAACTCATCAAAGACTTTGAGGGCAAGCGCCTTAATGCGTAT 22993 ||||| || || || | || || ||||||| |||||| || || || | || || ||| Sbjct 6 ACAAGTAACTCAGGAATCAATCTAATCAAAGGCTTTGAAGGTAAACGTTTAAAAGCTTAT 65 Query 22994 GATGATGGGGTGGGTGTTTGGACTATTGGTTTTGGAACCATTAAGTATCCGAATGGTGTC 23053 || ||||| || ||||||||||| ||||| ||||| || ||||| || ||||||||||| Sbjct 66 GACGATGGCGTTGGTGTTTGGACCATTGGATTTGGCACAATTAAATACCCGAATGGTGTA 125 Query 23054 CGAGTGAAAAAAGGTGATACCTGCACTGAACAGCAAGCTGAAACCTATTTGAAAAATGAT 23113 || || |||||||| ||| ||||||||| ||||| ||| ||| | |||||| Sbjct 126 CGTGTTAAAAAAGGCGATGTATGCACTGAATCTCAAGCAGAACAATATCTTCGTAATGAT 185 Query 23114 TTAACTAAGTTTGAAGTAGCTATTAATAAATTAGTTAAAGTGCCTCTTAGTCAGAATCAA 23173 || | |||||| ||||| ||| ||| || ||||| ||||||| ||| || ||| Sbjct 186 TTGGTTGTATTTGAAAACGCTATCAATCGATTGGTGAAAGTACCTCTTAATCAAAACCAA 245 Query 23174 TTCGATGCACTAGCATCTTTCACATATAATCTTGGTGAAACCAAT-TTAGCAAATTCAAC 23232 |||||||| |||| || ||||| ||||| | |||||| |||| |||||||| ||||| Sbjct 246 TTCGATGCTTTAGCTTCATTCACTTATAACTTGGGTGAAGGCAATCTTAGCAAA-TCAAC 304 Query 23233 TTTATTGAAGAAACTTAAT---AAAGGTGACTATCAAGGCGCTGCTGACCAATTCCTTGT 23289 | | | || || || ||| ||| |||||| |||| ||||| | |||| | | Sbjct 305 TCTGCTTAAAAAGCTAAATGCCAAA---GACTATAAAGGTGCTGCAGCTGAATTTCCTAA 361 Query 23290 CTGGAATAAGGCAGGAGG 23307 ||||| || || || || Sbjct 362 ATGGAACAAAGCTGGTGG 379 >seq10131 Length=28935 Score = 185 bits (204), Expect = 2e-42 Identities = 430/641 (67%), Gaps = 28/641 (4%) Strand=Plus/Plus Query 37355 TATGAATGCAGTAGCAGTTGAGAAGTTTGAACGTTTTGAATGGTTGACTCATGGTTTAAC 37414 |||||| |||||||||| |||||||||||| || || |||||||||||||| | || Sbjct 10504 TATGAACGCAGTAGCAG---AGAAGTTTGAACAATTCGAGTGGTTGACTCATGGCATCAC 10560 Query 37415 TGCGAGTTCACC--AAGT-ATTGAGCCAGTGGTCCGC--GGAACAGGAGAGAAACCATTG 37469 ||| | ||||| || | | ||| || || || |||||||||||||| ||| Sbjct 10561 TGCTAAGTCACCGCAATTCAATGA-----TGAGACGAAAGGCACAGGAGAGAAACCTTTG 10615 Query 37470 AACTATCAAGACCGCTTGGGTGCTATTGCTTCAATGGATACCCAGTTAGCAAAGTCAGTG 37529 |||||||||| ||||||||||||||||| ||||| |||||||| | || ||||| Sbjct 10616 GACTATCAAGATCGCTTGGGTGCTATTGCGAGCATGGAAACCCAGTTGGAGAAATCAGTA 10675 Query 37530 ACAGCGCTTATTGTATTTGAAGGCAAGTCAGAAAGTGATTATGAGTATGTTCGTAATCAC 37589 ||| | || || | | || | || | | ||||| ||||||| | | |||||||| Sbjct 10676 ACATCTCTAATCATCTATGGTGAAAATGCCAAGAGTGACTATGAGTTTATCCGTAATCAT 10735 Query 37590 TTGGCTAAGATCATGATTCAAAATGCCG--TA-GTTGATAAGAAGCGAGAGCCTGAACAT 37646 | ||||| || ||||| |||| | || | ||||| || ||||| || ||| Sbjct 10736 CTAGCTAAAATTATGATG---AATGGAGCTTATGAAGATAAACGTCGTGAGCCAGAGCAT 10792 Query 37647 GTCGCTATATATCACTTGGCATGGTTGATTGCTCGCCTAGTATTAGACTTCGCATTAAAT 37706 | || || ||||| || | ||| || |||| | | || ||| || || | || Sbjct 10793 ATTGCGATTTATCATTTATCTTGGCTGGTTGCAGGTATGGTCATAGCTTTTGCTATGGAT 10852 Query 37707 CCAGAGTTAGAAGAACA-TTACACAGCTAAAGGGCGCTTGGCTTATGCAG--GGC-TTAA 37762 || || || || || || ||| || ||||| | ||| || || | ||| |||| Sbjct 10853 CCTGAACATGA-GAGCAATTTCACCGCAAAAGGAAGATTGCATTTAGCTGCTGGCGTTAA 10911 Query 37763 GAGTCATCAGATGAATGTAGAGTGCTACCGAAAGACATGGAAGCCTTATGAAACATTGAT 37822 | | ||||||||| || || || ||||||||||| ||| |||| |||| Sbjct 10912 GTCTTATCAGATGACGTTAAAGGCATATGATTCGACATGGAAGCGTTACGAAAATATGAT 10971 Query 37823 GACTTTAGCAATTGANNNNNNNNNNNNNNNNNNNGGCAAAGCAGTTGAAGCCTACAAAAG 37882 || | | || | || | |||| |||||| |||| | Sbjct 10972 GATTATCGCTTTAGAAACTTCCATCAAATGTGCTGCGGAAGCGGTTGAAAAGTACAGGAA 11031 Query 37883 AAATACTTACAAAGATATGAAAGCGTA--GGTATTCCATTATTGCGGAAACAAGAGTATA 37940 ||||||||||||||| | |||| ||| | || | | | || | | || | ||||| Sbjct 11032 AAATACTTACAAAGAATTTAAAGTGTAAGGCTAGTAAAATTTTCCTG--ACTAAGGTATA 11089 Query 37941 GTTTTTATATACTGGTCGTATTACGGTTTATCCGAGACCAA 37981 |||||||||||||||||||||||||||| | || ||||||| Sbjct 11090 GTTTTTATATACTGGTCGTATTACGGTTCACCCAAGACCAA 11130 Score = 131 bits (144), Expect = 4e-26 Identities = 236/345 (68%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 33252 AAAGCTATTGGTGAAATCTCAAAAGGGTTGAAAGCAATCGCTAAAGAATTTGATTGCGTT 33311 |||| |||||| || || ||| | |||||| || ||| || ||||| || Sbjct 8016 AAAGATATTGGCGAGATTTCAGGGGAATTGAAAAAGATTGCTCGTGATTTTGAGTGTCCA 8075 Query 33312 GTATTCGCTCTATCTCAGCTTAGCCGCAACTTAGAGAACAGACCTAACAAACGTCCAGTT 33371 ||||| ||| || |||| || | ||| ||| | || |||||||| || ||||| || || Sbjct 8076 GTATTTGCTTTAGCTCAACTCAACCGAAACCTTGAAAACAGACCAAATAAACGCCCTGTA 8135 Query 33372 AATGCTGATCTCCGCGAATCTGGCCAATTGGAGCAGGATGCGGACGTGATTCTATTCATT 33431 || |||||| | || || || | || |||||||| || ||| | || | || ||| Sbjct 8136 AACGCTGATTTAAAAGAGTCAGGTGATTTAGAGCAGGACGCAGACATCATCATGTTTATT 8195 Query 33432 TACCGCGACGAAGTTTACGACAAGAACTCAAAAGATGCAGGAACTGCTGAAATCATCATC 33491 ||||| ||||| |||||| ||||| | || ||||| || ||||| ||||||||||| || Sbjct 8196 TACCGTGACGAGGTTTACAACAAGGAATCTAAAGAGGCTGGAACGGCTGAAATCATTATT 8255 Query 33492 GGAAAGTGCCGTGATGGAGAGGTGGGAACTGTACGTCTAGGTACTGATTTAGCAAGAGCA 33551 || || ||| | || ||||| || ||| || || ||||| | || Sbjct 8256 GGTAAAGCACGTAACGGGTCAACTGGAACAGTGAAATTAGCAACCGACTTAGCTCGCTCA 8315 Query 33552 ACATTTGCAGATCTTGATCCTGCTTATCTCGCTAGCTTGCAAGGG 33596 |||||||||||| | ||||| ||| ||| | ||| |||| Sbjct 8316 ACATTTGCAGATTTAAGTCCTGAATATTACGCAATGATGCGAGGG 8360 >seq9034 Length=15118 Score = 163 bits (180), Expect = 7e-36 Identities = 251/354 (71%), Gaps = 8/354 (2%) Strand=Plus/Minus Query 22958 ATCAAAGACTTTGAGGGCAAGCGCCTTAATGCGTATGATGATGGGGTGGGTGTTTGGACT 23017 ||||||| |||||| || || ||| | || || ||||| ||||| ||||| ||||||| Sbjct 10297 ATCAAAGGCTTTGAAGGTAAACGCTTGAAAGCTTATGACGATGGTGTGGGCATTTGGACC 10238 Query 23018 ATTGGTTTTGGAACCATTAAGTATCCGAATGGTGTCCGAGTGAAAAAAGGTGATACCTGC 23077 ||||| ||||| || || || || || || ||||| || || |||||||||||||| ||| Sbjct 10237 ATTGGATTTGGCACAATCAAATACCCTAACGGTGTGCGTGTAAAAAAAGGTGATACATGC 10178 Query 23078 ACTGAACAGCAAGCTGAAACCTATTTGAAAAATGATTTAACTAAGTTTGAAGTAGCTATT 23137 |||||| ||||| ||| ||| | ||||| || | |||||| ||||| Sbjct 10177 ACTGAATCTCAAGCAGAAGAATATCTTCGTAATGACCTAGTTGTATTTGAAAATGCTATC 10118 Query 23138 AATAAATTAGTTAAAGTGCCTCTTAGTCAGAATCAATTCGATGCACTAGCATCTTTCACA 23197 ||| || || || || || || | || || ||||||||||| |||| || || || Sbjct 10117 AATCGCTTGGTGAAGGTTCCGCTCAACCAAAACCAATTCGATGCTTTAGCCTCATTTACC 10058 Query 23198 TATAATCTTGGTGAAACCAAT-TTAGCAAATTCAACTTTATTGAAGAAACTTAAT---AA 23253 || || | || ||| |||| |||| |||| ||||| | | || || || ||| || Sbjct 10057 TACAACTTGGGCGAAGGCAATCTTAGTAAAT-CAACTCTGCTTAAAAAGCTCAATGCCAA 9999 Query 23254 AGGTGACTATCAAGGCGCTGCTGACCAATTCCTTGTCTGGAATAAGGCAGGAGG 23307 || |||| |||| ||||||| | |||| | ||||||||||| || || Sbjct 9998 AG---ACTACAAAGGTGCTGCTGCCGAATTTCCAAAGTGGAATAAGGCTGGTGG 9948 >seq7305 Length=28244 Score = 145 bits (160), Expect = 2e-30 Identities = 225/317 (71%), Gaps = 11/317 (3%) Strand=Plus/Minus Query 11513 AGGAGACGCC-ATGAAAACTACAAAATTAAACTATCGCTTAGCAGATGGTTATGGCATCG 11571 |||||| || ||||| | || ||||||| | | || || ||||| ||||| || Sbjct 25964 AGGAGATGCGTATGAACAATAATAAATTAATTTCTTATTTCGCTGATGGCTATGGTATTA 25905 Query 11572 GCTAGTTTACAAAAGAATACAAATAAAGCATCCTATTATGGGTGCTTTATTTTTATGAGT 11631 ||||||||||| | ||| ||||||||||||||||| |||||||||||||||||| | Sbjct 25904 GCTAGTTTACATTTTATTACGAATAAAGCATCCTATTAAGGGTGCTTTATTTTTATGTGA 25845 Query 11632 ATAAAATGGTAATTGATAACATATTATTACTAAGAACAATTTTATTATTTTTACCTTATT 11691 ||||||||| ||||||||| || ||| || ||||||| | | | ||| || | | Sbjct 25844 ATAAAATGGAAATTGATAATATTTTACTATTAAGAACCTTACTTCTGGCTTTGCCATTTA 25785 Query 11692 TTGGCCT---TTGGTATTTCTTTGATAAGAGAATTAAAGATAAATTCTTCTTAAAGCCGC 11748 | | || ||| ||||| ||| || || || ||| | ||||||||||| || Sbjct 25784 TAGTTCTTTATTGCTATTTTTTTTAT---TTTATAAAGGATGATTTCTTCTTAAAACCTA 25728 Query 11749 GAACCCATATGCAATTAAATTTCATAATGATTGCATTGGTTATTG--TTTTCGCAGAACT 11806 ||| |||| || ||||| | |||||| || | || || |||| ||| || | Sbjct 25727 GAAATTATATACAGTTAAACATAATAATGTTTTCTTTAGTAATTGCCTTTATGCTTA--C 25670 Query 11807 AGTATATTGGAATCTAT 11823 ||| ||||||||| ||| Sbjct 25669 AGTGTATTGGAATTTAT 25653 Score = 107 bits (118), Expect = 5e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8516 CTTAATCACACAACAAACCTGATCTACTTTTAACCGAACCTGTCCTTAGTGGCAGGtttt 8575 ||||||||||||||||||| || ||||||||| ||||||||||||||||| |||||||| Sbjct 13893 CTTAATCACACAACAAACCGGAATTACTTTTAAACGAACCTGTCCTTAGTGACAGGTTTT 13834 Query 8576 tttATGCCTGAAAT 8589 || ||||||||||| Sbjct 13833 TTAATGCCTGAAAT 13820 >seq6169 Length=202695 Score = 131 bits (144), Expect = 4e-26 Identities = 248/359 (69%), Gaps = 21/359 (6%) Strand=Plus/Plus Query 22979 CGCCTTAATGCGTATGATGATGGGGTGGGTGTTTGGACTATTGGTTTTGGAACCATT--A 23036 || || || |||||||| ||||| || ||||||||||||||||||| ||| || | | | Sbjct 2885 CGACTCAAAGCGTATGACGATGGTGTAGGTGTTTGGACTATTGGTTATGGCACAACTGCA 2944 Query 23037 AGTATCCGAATGGTGTCCGAGTGAAAAAAGGTGATACCTGCACTGAACAGCAAGCTGAAA 23096 | || |||||||| ||| || ||||||||||| ||||||| | |||||| | Sbjct 2945 ATTA-----ATGGTGTCGCAGTTAAGAAAGGTGATACTTGCACTGCTGAACAAGCTAAGT 2999 Query 23097 CCTATTTGAAAAATGATTTAACTAAGTTTGAAGTAGCTATTAATAAATTAGTTAAAGTGC 23156 |||| || | ||||||| || |||||| ||| | |||| | |||||||| | Sbjct 3000 CCTACATGGCTCAAGATTTAAAGAAATTTGAATCTGCTGTAAATACTTCGGTTAAAGTTC 3059 Query 23157 CTCTTAGTCAGAATCAATTCGATGCACTAGCATCTTTCACATATAATCTTGG---TGAAA 23213 | | | || ||||| |||||||| | | ||| || || || || |||| || Sbjct 3060 CATTAAACCAAAATCAGTTCGATGCTTTGGTATCATTGACTTACAACATTGGCACTGGTG 3119 Query 23214 CCAATTTAGCAAATTCAACTTTATTGAAGAAACTTAA----TAAAGGTGACTATCAAGGC 23269 | ||||| | | ||||| || | || ||| |||| |||| || ||| ||||| Sbjct 3120 C--ATTTA-AAGACTCAACACTACTCAA-AAAGTTAAATGCTAAA---GATTATAAAGGC 3172 Query 23270 GCTGCTGACCAATTCCTTGTCTGGAATAAGGCAGGAGGCAAAGTTATGAAAGGTCTAGT 23328 ||||| | ||||| | ||||| || | ||| ||||| |||||| |||| || || Sbjct 3173 GCTGCAGCTCAATTTGATCGATGGAACAAAGGAGGTGGCAAGGTTATGCAAGGGCTTGT 3231 >seq8065 Length=27066 Score = 127 bits (140), Expect = 5e-25 Identities = 195/278 (70%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 36757 TGCCGTCAGCTAGATGTGATGAAGATCGCTTACGAACAGGAGTTTAGATTCCATCCTGAG 36816 |||||||| ||||| | |||| || | || | || ||||||| || ||||||||| Sbjct 17586 TGCCGTCACCTAGACGCTTTGAAAATTGAATATGTGCAAGAGTTTAAGTTTCATCCTGAG 17527 Query 36817 CGTCGTTGGAAGGCGGACTTTCGGATTGAAGGTTATCCAATCTTAGTCGAAGTCGAAGGT 36876 || |||||||| || ||||| ||||| || |||||||| || || || || ||||| Sbjct 17526 CGGAAGTGGAAGGCTGATTTTCGCATTGAGGGCTATCCAATTTTGGTTGAGGTAGAAGGA 17467 Query 36877 GGAGCATTTAGCAATGGACGTCACACCAGAGGCGAAGGCTACACAGCAGACTGCGAGAAA 36936 || | || ||| || ||||| |||||| |||| || ||||||| || |||||| Sbjct 17466 GGTGTGTTCTCAGGTGGTCGGCACACAAGAGGCAAAGGTTATTCAGCAGATTGTGAGAAA 17407 Query 36937 TACTCAGTTGCAGCTATTCACGGATGGACTGTAATTCGTGGCACTACAAAGCAAGTTCAA 36996 ||| | ||||| || | || ||| || ||||| || |||||| | || || | Sbjct 17406 TACAGTGCAGCAGCAATCCTTGGTTGGGTAGTGATTCGAGGTACTACAGAACAGGTAAAG 17347 Query 36997 AGCGGCTTAGTGCTCAATTGGATTGAAGAAGCAATGAA 37034 | || | || | ||||||||||||||| || || Sbjct 17346 AAAGGGATTGTCGTTGGTTGGATTGAAGAAGCGATTAA 17309 Score = 84.2 bits (92), Expect = 6e-12 Identities = 151/210 (72%), Gaps = 13/210 (6%) Strand=Plus/Minus Query 28809 CATAATCTTCTCACTCATTGAGTAAAAGTCCCGTCGGTCGAATG-TCTGGGA-CTTTTTT 28866 |||||| ||||||||| ||||||||||| | | | | | | || | | ||||||| Sbjct 25169 CATAATATTCTCACTCTTTGAGTAAAAGCACATTAGATTTAGCGGTCGGTGTGCTTTTTT 25110 Query 28867 GTTATCTGGTGAGATTTATTAAACCAAAGGTATAAAATAAAAG-CAAGCATAAATTAAAC 28925 ||| | || |||||||||| | | | ||| ||| || || |||| ||| | ||| Sbjct 25109 GTTTT-TGATGAGATTTATATTAACTATGGT-TAATTTATTAGTCAAGAGAAAAGTTAAC 25052 Query 28926 CATAGGTGAAAATAATTTATGATTAG--GTTTAAATATGCTTTAATAGGCAAAAGAAAAC 28983 || ||| || | ||||| | | | ||||| ||||||||||| ||||||||||| Sbjct 25051 AAT-GGTTAACCTT-TTTATTAATTGTAGTTTA----TGCTTTAATAGACAAAAGAAAAC 24998 Query 28984 CCACACGGGGTGGGTTATTTGGAGTTTATT 29013 |||||| ||||||||| |||||| || || Sbjct 24997 CCACACTGGGTGGGTTGGTTGGAGGTTGTT 24968 >seq376 Length=32578 Score = 127 bits (140), Expect = 5e-25 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 25687 TGGCTTTTTCTAGCTCTGCTCTAAGTCTGTCAATTTCACATGCTGCATGGTGACAAATAA 25746 ||||||| ||| || ||||||||||| ||||||||| |||||||| |||||||| | Sbjct 922 TGGCTTTGGCTAACTTTGCTCTAAGTCGATCAATTTCATTTGCTGCATAATGACAAATTA 863 Query 25747 CACGTAATTCATCTTCGTTATATTCATCTGCATGCATCATCATTAAATGACTGATTTCGG 25806 ||||| |||||||| || || ||||| || | ||||||||||| ||||| | Sbjct 862 GACGTACATCATCTTCATTGTAATCATCAATGTGAGAAGTAATTAAATGACTAATTTCAG 803 Query 25807 TGCCAAATTGATTATCACCATCGAACACCCAAACAAAACCATCATCTTGTTCAAAGCGTA 25866 |||| ||| |||||||| || |||||||| | |||| ||||| ||||| |||| Sbjct 802 TGCCTTGATGACTATCACCACTAAATACCCAAACCGCATCATCTTCTTGCTCAAAACGTA 743 Query 25867 AAT 25869 ||| Sbjct 742 AAT 740 >seq12839 Length=204338 Score = 113 bits (124), Expect = 1e-20 Identities = 226/330 (68%), Gaps = 4/330 (1%) Strand=Plus/Minus Query 33204 GACTATCTGCAAATCATGAAAAGCCCAGTAGTTACCGACAACCAAGTTAAAGCTATTGGT 33263 || ||||||||| | |||||| |||| | || |||| ||| | |||||| Sbjct 82002 GATTATCTGCAATTGATGAAAGTACCAGGCATGGGTGATAACCGTGTTGGTGAGATTGGT 81943 Query 33264 GAAATCTCAAAAGGGTTGAAAGCAATCGCTAAAGAATTTGAT-TGCGTTGTATTCGCTCT 33322 ||||| ||| | | || ||||| | || || ||| | ||| ||| ||| | || || Sbjct 81942 GAAATTTCACGAAGCTTAAAAGCCCTTGCCAAGGAAAT-GATGTGCCCTGTTATTGCACT 81884 Query 33323 ATCTCAGCTTAGCCGCAACTTAGAGAACAGACCTAACAAACGTCCAGTTAATG-CTGATC 33381 || ||||||| ||| | || ||| | || || |||||||| || |||| | || Sbjct 81883 GTCACAGCTTAACCGTTCTCTGGAAAACCGTCCAAATAAACGTCCGGT-AATGTCCGACT 81825 Query 33382 TCCGCGAATCTGGCCAATTGGAGCAGGATGCGGACGTGATTCTATTCATTTACCGCGACG 33441 | || ||||| || | | ||||||||||| || | ||| | || |||||||| || | Sbjct 81824 TACGTGAATCAGGTGCAATCGAGCAGGATGCCGATTTAATTATGTTTATTTACCGTGATG 81765 Query 33442 AAGTTTACGACAAGAACTCAAAAGATGCAGGAACTGCTGAAATCATCATCGGAAAGTGCC 33501 | ||||| |||| | || ||||| ||||| || |||||||| ||||| || || | Sbjct 81764 AGGTTTATAACAAAGAGTCGAAAGAAGCAGGCACAGCTGAAATTATCATTGGTAAACAAC 81705 Query 33502 GTGATGGAGAGGTGGGAACTGTACGTCTAG 33531 || |||| | | || ||||| ||| ||| Sbjct 81704 GTAATGGCCCGATCGGGACTGTGCGTTTAG 81675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130251903455938