Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031107.1
Length=246291
Score E
Sequences producing significant alignments: (Bits) Value
seq10734 187 4e-42
seq7053 174 2e-38
seq9639 145 1e-29
seq9470 145 1e-29
seq6415 143 4e-29
seq9538 140 5e-28
seq11739 109 9e-19
seq11622 93.3 7e-14
seq11968 86.0 1e-11
seq7327 86.0 1e-11
seq6860 86.0 1e-11
>seq10734
Length=9239
Score = 187 bits (206), Expect = 4e-42
Identities = 189/246 (77%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 201848 GACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAA 201907
|| || ||||| || ||||||| | || || || | |||||||| || ||| |
Sbjct 1276 GATCGCACCGGCACCGGCACCCGCAGCGTGTTTGGCTGGCAGATGCGTTTCAACCTGGCC 1335
Query 201908 GAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTG 201967
||||| || ||||||||||||||||| ||| | ||||| || || |||||||| ||||||
Sbjct 1336 GAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCATCCACGAGCTG 1395
Query 201968 CTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATC 202027
||||||||||| | ||| |||||||||||| || |||| |||||| | || |||
Sbjct 1396 CTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTGAAGGACAACCAGGTACGGATC 1455
Query 202028 TGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGT 202087
|||||||| ||||| || | || || ||| | |||||||| ||||| ||||| |||||
Sbjct 1456 TGGGACGAGTGGGCCGACGACAATGGCGACCTCGGCCCGGTCTACGGCAAGCAGTGGCGC 1515
Query 202088 AGCTGG 202093
||||||
Sbjct 1516 AGCTGG 1521
>seq7053
Length=464797
Score = 174 bits (192), Expect = 2e-38
Identities = 186/246 (76%), Gaps = 0/246 (0%)
Strand=Plus/Minus
Query 201848 GACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAA 201907
||||| ||||| ||||| || | ||| || ||||| |||||||||||| || |
Sbjct 70840 GACCGCACCGGCACGGGTACGCGCTCGGTCTTCGGTTACCAGATGCGCTTCGACCTTTCC 70781
Query 201908 GAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTG 201967
|||||||||||| | |||||||||| ||| | || || || || ||||||||||| ||
Sbjct 70780 GAAGGTTTTCCGGTTCTCACCACCAAGAAGCTGCATCTGCGCTCCATCATCCATGAATTG 70721
Query 201968 CTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATC 202027
||||||||||| | ||| || ||||| ||| ||| | || || ||| ||| |||||
Sbjct 70720 CTGTGGTTCCTGAAGGGCGATACCAATATCGCCTATCTCAAGGAAAACGGCGTTTCCATC 70661
Query 202028 TGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGT 202087
|||||||||||||| || | ||||| || | |||||||| || ||| ||| ||||||
Sbjct 70660 TGGGACGAATGGGCCGACGAGAACGGCGATCTCGGCCCGGTCTATGGTGCGCAGTGGCGT 70601
Query 202088 AGCTGG 202093
||||
Sbjct 70600 TCCTGG 70595
>seq9639
Length=103419
Score = 145 bits (160), Expect = 1e-29
Identities = 181/248 (73%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 201846 CCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTAC 201905
||||||||||||| |||||||| | | || ||||| | |||||||||||| || |
Sbjct 4296 CCGACCGTACCGGCACGGGCACGCGCAGCGTGTTCGGCCACCAGATGCGCTTCGACCTGT 4237
Query 201906 AAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGC 201965
||||| |||||||||||||||||||| ||||| ||||| || ||||||| || |
Sbjct 4236 CCGAAGGCTTTCCGCTGGTCACCACCAAGAAGGTGCACCTCAAGTCCATCATCCTGGAAC 4177
Query 201966 TGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCA 202025
||||||||||||| || |||| ||| | | | || | || | | |||||
Sbjct 4176 TGCTGTGGTTCCTGCGCGGCGACAGCAATGTGCGCTGGCTGCAGGAGCGCGGCTGCACCA 4117
Query 202026 TCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGC 202085
|||||||||||||||| | |||| ||| | |||||||| || || ||||||||
Sbjct 4116 TCTGGGACGAATGGGCCCGCGAGGACGGCGACCTGGGCCCGGTCTATGGCGTGCAATGGC 4057
Query 202086 GTAGCTGG 202093
| | ||||
Sbjct 4056 GCAACTGG 4049
Score = 87.8 bits (96), Expect = 3e-12
Identities = 103/137 (75%), Gaps = 2/137 (1%)
Strand=Plus/Minus
Query 202204 CATTGACCAAATCGCCAAAGTGGTTGACCAGCTGCGTAATGACCCCGACAACCGTCGTAT 202263
||| ||||| |||||| ||||||| | ||||| | |||| |||| ||| || ||
Sbjct 4028 CATCGACCAGATCGCCGAAGTGGTCAAGCAGCTCAAGAGCAACCCGGACAGCCGCCGCAT 3969
Query 202264 TATTGTCAGCGCCTGGAACGTGGCAGAGCTAGACG-AGATGGCCTTGGCCCCGTGTCATG 202322
|| |||||||||||||||||||| || || | || ||||||| | || || || |
Sbjct 3968 CATCGTCAGCGCCTGGAACGTGGCCGACCT-GCCGCAGATGGCGCTCATGCCCTGCCACG 3910
Query 202323 CGTTCTTCCAGTTCTAC 202339
| |||||||||||||||
Sbjct 3909 CCTTCTTCCAGTTCTAC 3893
>seq9470
Length=127963
Score = 145 bits (160), Expect = 1e-29
Identities = 176/240 (73%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACA 201906
|||||| ||||| || |||||||| || ||||| |||||||||||||| || |
Sbjct 53205 CGACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGCCGCCAGATGCGCTTCGACCTGGC 53146
Query 201907 AGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCT 201966
|| ||||||||| | |||||||| ||| | ||||| || || |||||| |||||
Sbjct 53145 GCGGGGCTTTCCGCTGCTGACCACCAAGAAGCTGCACCTGCGCTCGATCATCGTCGAGCT 53086
Query 201967 GCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCAT 202026
||||||||||| || || ||||||||| | |||| |||||| |||| |||
Sbjct 53085 TCTGTGGTTCCTGCGCGGCGAGACCAACATCGCCTGGCTGAAGGACAACGGGGTCAGCAT 53026
Query 202027 CTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086
||||||||||||||| || | || || | || ||||| ||||| ||||| |||||
Sbjct 53025 CTGGGACGAATGGGCCGACGCCGAGGGCGAGCTCGGTCCGGTCTACGGCAAGCAGTGGCG 52966
>seq6415
Length=247467
Score = 143 bits (158), Expect = 4e-29
Identities = 178/241 (74%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAA-CTTAC 201905
|||||| || || || ||||| || || ||||| || ||||| ||||| | || |
Sbjct 52968 CGACCGCACGGGCACCGGCACGCTGGGCGTGTTCGGCCGGCAGATCCGCTTCGATCTGGC 53027
Query 201906 AAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGC 201965
| | || || ||| | | ||| |||| ||| | ||||| || || |||||| ||||
Sbjct 53028 CA-AGGGCTTCCCGGTTCTGACCTCCAAGAAGCTGCACCTGCGCTCGATCATCATCGAGC 53086
Query 201966 TGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCA 202025
||||||||||||| | ||| |||||||||||| || | || |||||| ||| ||
Sbjct 53087 TGCTGTGGTTCCTGAAGGGCGACACCAACATCGCCTACCTCAAGGACAACGGCGTGCGCA 53146
Query 202026 TCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGC 202085
|||||||||| ||||| || ||||||| || | |||||||| ||||| ||||| ||||
Sbjct 53147 TCTGGGACGAGTGGGCCGACGAAAACGGCGATCTTGGCCCGGTCTACGGCAAGCAGTGGC 53206
Query 202086 G 202086
|
Sbjct 53207 G 53207
>seq9538
Length=646221
Score = 140 bits (154), Expect = 5e-28
Identities = 175/240 (73%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACA 201906
|||||| ||||| || ||||| | ||| || ||||| |||||||| || | |
Sbjct 486500 CGACCGCACCGGCACCGGCACACGCTCGGTGTTCGGCTATCAGATGCGTTTCGATCTGGC 486559
Query 201907 AGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCT 201966
|| || || ||| || | |||||||| || | ||||| || |||||||| || ||
Sbjct 486560 CGACGGCTTCCCGGTGCTTACCACCAAGAAACTGCACCTGAAGTCGATCATCCACGAACT 486619
Query 201967 GCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCAT 202026
|||||||| || || || ||||||||| | ||| |||| ||| || |||||||||
Sbjct 486620 TCTGTGGTTTCTGGCCGGCGATACCAACATCAAATATCTGAACGACCACGGCGTCACCAT 486679
Query 202027 CTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086
||||||||| ||||||||| || || || | |||||||| || || ||||| |||||
Sbjct 486680 CTGGGACGAGTGGGCGGATGCCAAGGGCGATCTCGGCCCGGTCTATGGCAAGCAGTGGCG 486739
>seq11739
Length=237542
Score = 109 bits (120), Expect = 9e-19
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 201842 AAAGCCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAAC 201901
|||| || ||||| ||||| || || | ||||| || || | || ||||| ||| ||
Sbjct 9427 AAAGGTGATCGTACTGGTACAGGTACTCGTTCTGTATTTGGTCATCAAATGCGTTTTGAC 9368
Query 201902 TTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCAT 201961
|| | |||| |||||||| | ||||| ||||| |||| | || || || | |
Sbjct 9367 TTGTCAAAAGGGTTTCCGCTACTAACCACTAAAAAAATTCATTTCCGCTCCATTGTGATT 9308
Query 201962 GAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTC 202021
|| |||||||||||||| | || ||||||||| | || ||| | |||||||| || ||
Sbjct 9307 GAACTGCTGTGGTTCCTAAAAGGCGACACCAACGTTCAATATCTTAAAGACAATAAAGTT 9248
Query 202022 ACCATCTGGGACGAATGG 202039
| || ||||| ||||||
Sbjct 9247 TCGATTTGGGATGAATGG 9230
>seq11622
Length=276999
Score = 93.3 bits (102), Expect = 7e-14
Identities = 63/71 (89%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 618 AGTAGTTCAACTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGCAGGTTCGAGTCCTGT 677
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 93 AGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGGGGGTTCGAGTCCCTC 152
Query 678 CTCCCCTGCCA 688
|| |||||||
Sbjct 153 CTGACCTGCCA 163
>seq11968
Length=3642
Score = 86.0 bits (94), Expect = 1e-11
Identities = 55/60 (92%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 4030 CTCGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCT 4089
|| |||||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||
Sbjct 794 CTTGTAGCTCAGTTGGTTAGAGCGCGCGCTTGATAAGCGTGAGGTCGGAAGTTCAAGTCT 853
>seq7327
Length=362
Score = 86.0 bits (94), Expect = 1e-11
Identities = 55/60 (92%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 4030 CTCGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCT 4089
|| |||||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||
Sbjct 140 CTTGTAGCTCAGTTGGTTAGAGCGCGCGCTTGATAAGCGTGAGGTCGGAAGTTCAAGTCT 81
>seq6860
Length=6169
Score = 86.0 bits (94), Expect = 1e-11
Identities = 55/60 (92%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 4030 CTCGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCT 4089
|| |||||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||
Sbjct 2655 CTTGTAGCTCAGTTGGTTAGAGCGCGCGCTTGATAAGCGTGAGGTCGGAAGTTCAAGTCT 2714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 787854868247640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |