Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq10734 187 4e-42 seq7053 174 2e-38 seq9639 145 1e-29 seq9470 145 1e-29 seq6415 143 4e-29 seq9538 140 5e-28 seq11739 109 9e-19 seq11622 93.3 7e-14 seq11968 86.0 1e-11 seq7327 86.0 1e-11 seq6860 86.0 1e-11 >seq10734 Length=9239 Score = 187 bits (206), Expect = 4e-42 Identities = 189/246 (77%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 201848 GACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAA 201907 || || ||||| || ||||||| | || || || | |||||||| || ||| | Sbjct 1276 GATCGCACCGGCACCGGCACCCGCAGCGTGTTTGGCTGGCAGATGCGTTTCAACCTGGCC 1335 Query 201908 GAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTG 201967 ||||| || ||||||||||||||||| ||| | ||||| || || |||||||| |||||| Sbjct 1336 GAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCATCCACGAGCTG 1395 Query 201968 CTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATC 202027 ||||||||||| | ||| |||||||||||| || |||| |||||| | || ||| Sbjct 1396 CTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTGAAGGACAACCAGGTACGGATC 1455 Query 202028 TGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGT 202087 |||||||| ||||| || | || || ||| | |||||||| ||||| ||||| ||||| Sbjct 1456 TGGGACGAGTGGGCCGACGACAATGGCGACCTCGGCCCGGTCTACGGCAAGCAGTGGCGC 1515 Query 202088 AGCTGG 202093 |||||| Sbjct 1516 AGCTGG 1521 >seq7053 Length=464797 Score = 174 bits (192), Expect = 2e-38 Identities = 186/246 (76%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 201848 GACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAA 201907 ||||| ||||| ||||| || | ||| || ||||| |||||||||||| || | Sbjct 70840 GACCGCACCGGCACGGGTACGCGCTCGGTCTTCGGTTACCAGATGCGCTTCGACCTTTCC 70781 Query 201908 GAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTG 201967 |||||||||||| | |||||||||| ||| | || || || || ||||||||||| || Sbjct 70780 GAAGGTTTTCCGGTTCTCACCACCAAGAAGCTGCATCTGCGCTCCATCATCCATGAATTG 70721 Query 201968 CTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATC 202027 ||||||||||| | ||| || ||||| ||| ||| | || || ||| ||| ||||| Sbjct 70720 CTGTGGTTCCTGAAGGGCGATACCAATATCGCCTATCTCAAGGAAAACGGCGTTTCCATC 70661 Query 202028 TGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGT 202087 |||||||||||||| || | ||||| || | |||||||| || ||| ||| |||||| Sbjct 70660 TGGGACGAATGGGCCGACGAGAACGGCGATCTCGGCCCGGTCTATGGTGCGCAGTGGCGT 70601 Query 202088 AGCTGG 202093 |||| Sbjct 70600 TCCTGG 70595 >seq9639 Length=103419 Score = 145 bits (160), Expect = 1e-29 Identities = 181/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 201846 CCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTAC 201905 ||||||||||||| |||||||| | | || ||||| | |||||||||||| || | Sbjct 4296 CCGACCGTACCGGCACGGGCACGCGCAGCGTGTTCGGCCACCAGATGCGCTTCGACCTGT 4237 Query 201906 AAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGC 201965 ||||| |||||||||||||||||||| ||||| ||||| || ||||||| || | Sbjct 4236 CCGAAGGCTTTCCGCTGGTCACCACCAAGAAGGTGCACCTCAAGTCCATCATCCTGGAAC 4177 Query 201966 TGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCA 202025 ||||||||||||| || |||| ||| | | | || | || | | ||||| Sbjct 4176 TGCTGTGGTTCCTGCGCGGCGACAGCAATGTGCGCTGGCTGCAGGAGCGCGGCTGCACCA 4117 Query 202026 TCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGC 202085 |||||||||||||||| | |||| ||| | |||||||| || || |||||||| Sbjct 4116 TCTGGGACGAATGGGCCCGCGAGGACGGCGACCTGGGCCCGGTCTATGGCGTGCAATGGC 4057 Query 202086 GTAGCTGG 202093 | | |||| Sbjct 4056 GCAACTGG 4049 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 202204 CATTGACCAAATCGCCAAAGTGGTTGACCAGCTGCGTAATGACCCCGACAACCGTCGTAT 202263 ||| ||||| |||||| ||||||| | ||||| | |||| |||| ||| || || Sbjct 4028 CATCGACCAGATCGCCGAAGTGGTCAAGCAGCTCAAGAGCAACCCGGACAGCCGCCGCAT 3969 Query 202264 TATTGTCAGCGCCTGGAACGTGGCAGAGCTAGACG-AGATGGCCTTGGCCCCGTGTCATG 202322 || |||||||||||||||||||| || || | || ||||||| | || || || | Sbjct 3968 CATCGTCAGCGCCTGGAACGTGGCCGACCT-GCCGCAGATGGCGCTCATGCCCTGCCACG 3910 Query 202323 CGTTCTTCCAGTTCTAC 202339 | ||||||||||||||| Sbjct 3909 CCTTCTTCCAGTTCTAC 3893 >seq9470 Length=127963 Score = 145 bits (160), Expect = 1e-29 Identities = 176/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACA 201906 |||||| ||||| || |||||||| || ||||| |||||||||||||| || | Sbjct 53205 CGACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGCCGCCAGATGCGCTTCGACCTGGC 53146 Query 201907 AGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCT 201966 || ||||||||| | |||||||| ||| | ||||| || || |||||| ||||| Sbjct 53145 GCGGGGCTTTCCGCTGCTGACCACCAAGAAGCTGCACCTGCGCTCGATCATCGTCGAGCT 53086 Query 201967 GCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCAT 202026 ||||||||||| || || ||||||||| | |||| |||||| |||| ||| Sbjct 53085 TCTGTGGTTCCTGCGCGGCGAGACCAACATCGCCTGGCTGAAGGACAACGGGGTCAGCAT 53026 Query 202027 CTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 ||||||||||||||| || | || || | || ||||| ||||| ||||| ||||| Sbjct 53025 CTGGGACGAATGGGCCGACGCCGAGGGCGAGCTCGGTCCGGTCTACGGCAAGCAGTGGCG 52966 >seq6415 Length=247467 Score = 143 bits (158), Expect = 4e-29 Identities = 178/241 (74%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAA-CTTAC 201905 |||||| || || || ||||| || || ||||| || ||||| ||||| | || | Sbjct 52968 CGACCGCACGGGCACCGGCACGCTGGGCGTGTTCGGCCGGCAGATCCGCTTCGATCTGGC 53027 Query 201906 AAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGC 201965 | | || || ||| | | ||| |||| ||| | ||||| || || |||||| |||| Sbjct 53028 CA-AGGGCTTCCCGGTTCTGACCTCCAAGAAGCTGCACCTGCGCTCGATCATCATCGAGC 53086 Query 201966 TGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCA 202025 ||||||||||||| | ||| |||||||||||| || | || |||||| ||| || Sbjct 53087 TGCTGTGGTTCCTGAAGGGCGACACCAACATCGCCTACCTCAAGGACAACGGCGTGCGCA 53146 Query 202026 TCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGC 202085 |||||||||| ||||| || ||||||| || | |||||||| ||||| ||||| |||| Sbjct 53147 TCTGGGACGAGTGGGCCGACGAAAACGGCGATCTTGGCCCGGTCTACGGCAAGCAGTGGC 53206 Query 202086 G 202086 | Sbjct 53207 G 53207 >seq9538 Length=646221 Score = 140 bits (154), Expect = 5e-28 Identities = 175/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACA 201906 |||||| ||||| || ||||| | ||| || ||||| |||||||| || | | Sbjct 486500 CGACCGCACCGGCACCGGCACACGCTCGGTGTTCGGCTATCAGATGCGTTTCGATCTGGC 486559 Query 201907 AGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCT 201966 || || || ||| || | |||||||| || | ||||| || |||||||| || || Sbjct 486560 CGACGGCTTCCCGGTGCTTACCACCAAGAAACTGCACCTGAAGTCGATCATCCACGAACT 486619 Query 201967 GCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCAT 202026 |||||||| || || || ||||||||| | ||| |||| ||| || ||||||||| Sbjct 486620 TCTGTGGTTTCTGGCCGGCGATACCAACATCAAATATCTGAACGACCACGGCGTCACCAT 486679 Query 202027 CTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 ||||||||| ||||||||| || || || | |||||||| || || ||||| ||||| Sbjct 486680 CTGGGACGAGTGGGCGGATGCCAAGGGCGATCTCGGCCCGGTCTATGGCAAGCAGTGGCG 486739 >seq11739 Length=237542 Score = 109 bits (120), Expect = 9e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 201842 AAAGCCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAAC 201901 |||| || ||||| ||||| || || | ||||| || || | || ||||| ||| || Sbjct 9427 AAAGGTGATCGTACTGGTACAGGTACTCGTTCTGTATTTGGTCATCAAATGCGTTTTGAC 9368 Query 201902 TTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCAT 201961 || | |||| |||||||| | ||||| ||||| |||| | || || || | | Sbjct 9367 TTGTCAAAAGGGTTTCCGCTACTAACCACTAAAAAAATTCATTTCCGCTCCATTGTGATT 9308 Query 201962 GAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTC 202021 || |||||||||||||| | || ||||||||| | || ||| | |||||||| || || Sbjct 9307 GAACTGCTGTGGTTCCTAAAAGGCGACACCAACGTTCAATATCTTAAAGACAATAAAGTT 9248 Query 202022 ACCATCTGGGACGAATGG 202039 | || ||||| |||||| Sbjct 9247 TCGATTTGGGATGAATGG 9230 >seq11622 Length=276999 Score = 93.3 bits (102), Expect = 7e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 618 AGTAGTTCAACTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGCAGGTTCGAGTCCTGT 677 |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 93 AGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGGGGGTTCGAGTCCCTC 152 Query 678 CTCCCCTGCCA 688 || ||||||| Sbjct 153 CTGACCTGCCA 163 >seq11968 Length=3642 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 4030 CTCGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCT 4089 || |||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||| Sbjct 794 CTTGTAGCTCAGTTGGTTAGAGCGCGCGCTTGATAAGCGTGAGGTCGGAAGTTCAAGTCT 853 >seq7327 Length=362 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 4030 CTCGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCT 4089 || |||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||| Sbjct 140 CTTGTAGCTCAGTTGGTTAGAGCGCGCGCTTGATAAGCGTGAGGTCGGAAGTTCAAGTCT 81 >seq6860 Length=6169 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 4030 CTCGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCT 4089 || |||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||| Sbjct 2655 CTTGTAGCTCAGTTGGTTAGAGCGCGCGCTTGATAAGCGTGAGGTCGGAAGTTCAAGTCT 2714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787854868247640