Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031117.1 Length=44885 Score E Sequences producing significant alignments: (Bits) Value seq10131 86.0 2e-12 >seq10131 Length=28935 Score = 86.0 bits (94), Expect = 2e-12 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 32360 GAATTTGATTGTCCTGTTTTTTGTTTAGCGCAATTAAGCCGAAGCTTAGAATCCAGAAAA 32419 || ||||| ||||| || ||| |||||| ||| | | ||||| | | ||| |||| | Sbjct 8061 GATTTTGAGTGTCCAGTATTTGCTTTAGCTCAACTCAACCGAAACCTTGAAAACAGACCA 8120 Query 32420 GATAGACGACCTCTAATGTCTGACATTCGTGAGTCGGGATCTATTGAAGAGGACGCAGAT 32479 ||| ||| ||| ||| |||| | ||||| || | | || |||||||||| Sbjct 8121 AATAAACGCCCTGTAAACGCTGATTTAAAAGAGTCAGGTGATTTAGAGCAGGACGCAGAC 8180 Query 32480 GTGATCATGTTTATATATCGTGATGAGTATTATGATAAAAACTCAAAGGATCAAGGTATT 32539 | ||||||||||| || ||||| ||| ||| | || | || || || || | Sbjct 8181 ATCATCATGTTTATTTACCGTGACGAGGTTTACAACAAGGAATCTAAAGAGGCTGGAACG 8240 Query 32540 GCTGAAATAATTGTAGCTAAAGCGCGTGATGGTGAGGTTGGAACGGTTAGATTAGCAACT 32599 |||||||| ||| | | |||||| ||| | || |||||| || | ||||||||| Sbjct 8241 GCTGAAATCATTATTGGTAAAGCACGTAACGGGTCAACTGGAACAGTGAAATTAGCAACC 8300 Query 32600 GA 32601 || Sbjct 8301 GA 8302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143484736663026