Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq9538 102 1e-16 seq7053 98.7 2e-15 seq646 84.2 3e-11 >seq9538 Length=646221 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 200137 CAGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTC 200196 |||||||| ||| |||| ||||||||||| || | || |||||||| || || Sbjct 486540 CAGATGCGTTTCGATCTGGCCGACGGCTTCCCGGTGCTTACCACCAAGAAACTGCACCTG 486599 Query 200197 CGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTG 200256 || ||||| ||||| || ||||||| || ||| || ||||| ||||| |||||| Sbjct 486600 AAGTCGATCATCCACGAACTTCTGTGGTTTCTGGCCGGCGATACCAACATCAAATATCTG 486659 Query 200257 AACGATAACAATGTCACCATTTGGGACGAATGGGCG 200292 ||||| || |||||||| |||||||| |||||| Sbjct 486660 AACGACCACGGCGTCACCATCTGGGACGAGTGGGCG 486695 >seq7053 Length=464797 Score = 98.7 bits (108), Expect = 2e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 200128 TTCGGTGCACAGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAG 200187 |||||| |||||||||||| | || || || || || | | || ||||||||| Sbjct 70810 TTCGGTTACCAGATGCGCTTCGACCTTTCCGAAGGTTTTCCGGTTCTCACCACCAAGAAG 70751 Query 200188 TGCCATCTCCGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATC 200247 ||||| || |||||||| || || || |||||||||| || || || ||||||||| Sbjct 70750 CTGCATCTGCGCTCCATCATCCATGAATTGCTGTGGTTCCTGAAGGGCGATACCAATATC 70691 Query 200248 AAGTATCTGAACGATAACAATGTCACCATTTGGGACGAATGGGC 200291 ||||| || || ||| || |||| |||||||||||||| Sbjct 70690 GCCTATCTCAAGGAAAACGGCGTTTCCATCTGGGACGAATGGGC 70647 >seq646 Length=687 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 200176 ACGACCAAGAAG-TGCCATCTCCGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGG 200234 |||||||||||| |||| ||| | ||| | ||||||||| | |||||||| ||| Sbjct 678 ACGACCAAGAAGCTGCC-GCTCAAGGCGATCGTGCACGAGCTGCTCTGGTTCCTGGCCGG 620 Query 200235 TGACACCAATATCAAGTATCTGAACGATAACAATGTCACCATTTGGGACGAATGGGCG 200292 |||||||| ||||| || ||| |||| |||| ||||| || |||||||| || ||| Sbjct 619 CGACACCAACATCAAATACCTGCACGACCACAACGTCACGATCTGGGACGAGTGAGCG 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783212542272000