Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031126.1
Length=244840
Score E
Sequences producing significant alignments: (Bits) Value
seq9538 102 1e-16
seq7053 98.7 2e-15
seq646 84.2 3e-11
>seq9538
Length=646221
Score = 102 bits (112), Expect = 1e-16
Identities = 116/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 200137 CAGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTC 200196
|||||||| ||| |||| ||||||||||| || | || |||||||| || ||
Sbjct 486540 CAGATGCGTTTCGATCTGGCCGACGGCTTCCCGGTGCTTACCACCAAGAAACTGCACCTG 486599
Query 200197 CGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTG 200256
|| ||||| ||||| || ||||||| || ||| || ||||| ||||| ||||||
Sbjct 486600 AAGTCGATCATCCACGAACTTCTGTGGTTTCTGGCCGGCGATACCAACATCAAATATCTG 486659
Query 200257 AACGATAACAATGTCACCATTTGGGACGAATGGGCG 200292
||||| || |||||||| |||||||| ||||||
Sbjct 486660 AACGACCACGGCGTCACCATCTGGGACGAGTGGGCG 486695
>seq7053
Length=464797
Score = 98.7 bits (108), Expect = 2e-15
Identities = 120/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 200128 TTCGGTGCACAGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAG 200187
|||||| |||||||||||| | || || || || || | | || |||||||||
Sbjct 70810 TTCGGTTACCAGATGCGCTTCGACCTTTCCGAAGGTTTTCCGGTTCTCACCACCAAGAAG 70751
Query 200188 TGCCATCTCCGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATC 200247
||||| || |||||||| || || || |||||||||| || || || |||||||||
Sbjct 70750 CTGCATCTGCGCTCCATCATCCATGAATTGCTGTGGTTCCTGAAGGGCGATACCAATATC 70691
Query 200248 AAGTATCTGAACGATAACAATGTCACCATTTGGGACGAATGGGC 200291
||||| || || ||| || |||| ||||||||||||||
Sbjct 70690 GCCTATCTCAAGGAAAACGGCGTTTCCATCTGGGACGAATGGGC 70647
>seq646
Length=687
Score = 84.2 bits (92), Expect = 3e-11
Identities = 91/118 (77%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 200176 ACGACCAAGAAG-TGCCATCTCCGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGG 200234
|||||||||||| |||| ||| | ||| | ||||||||| | |||||||| |||
Sbjct 678 ACGACCAAGAAGCTGCC-GCTCAAGGCGATCGTGCACGAGCTGCTCTGGTTCCTGGCCGG 620
Query 200235 TGACACCAATATCAAGTATCTGAACGATAACAATGTCACCATTTGGGACGAATGGGCG 200292
|||||||| ||||| || ||| |||| |||| ||||| || |||||||| || |||
Sbjct 619 CGACACCAACATCAAATACCTGCACGACCACAACGTCACGATCTGGGACGAGTGAGCG 562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 783212542272000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |