Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq10734 233 3e-56 seq9538 206 4e-48 seq6415 185 1e-41 seq7053 183 5e-41 seq9470 170 3e-37 seq9639 138 2e-27 seq11739 114 2e-20 seq646 91.5 2e-13 >seq10734 Length=9239 Score = 233 bits (258), Expect = 3e-56 Identities = 201/249 (81%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 196061 CGAGAAAGCTGACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTT 196120 ||||||| ||| || |||||||| |||||| | | || || | ||||||||||| Sbjct 1266 CGAGAAAAGTGATCGCACCGGCACCGGCACCCGCAGCGTGTTTGGCTGGCAGATGCGTTT 1325 Query 196121 TGACCTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCAT 196180 ||||| | |||| |||||||||||||||||||| ||| |||||||||| || ||||| Sbjct 1326 CAACCTGGCCGAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCAT 1385 Query 196181 CCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAA 196240 |||||| ||| ||||||||||||| ||||||||||||||| || ||||| |||||| | Sbjct 1386 CCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTGAAGGACAACCA 1445 Query 196241 CGTCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAA 196300 || | |||||||| |||||||| || || ||||||| || ||||| |||||||| || Sbjct 1446 GGTACGGATCTGGGACGAGTGGGCCGACGACAATGGCGACCTCGGCCCGGTCTACGGCAA 1505 Query 196301 GCAGTGGCG 196309 ||||||||| Sbjct 1506 GCAGTGGCG 1514 Score = 100 bits (110), Expect = 4e-16 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 196754 CTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATCGCTTC 196813 ||| ||||| ||||||||||| | ||| |||||||||| || |||||||||||||| Sbjct 1702 CTGCCAGCTGTACCAGCGCAGCGGCGACATCTTCCTCGGAGTGCCGTTCAACATCGCCAG 1761 Query 196814 GTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCA---ATATGGTGGCGGGTGATTT 196870 ||||| ||| || ||||||||||| ||||| || ||| | ||| || || Sbjct 1762 CTACGCGCTGCTGACCCACATGGTGGC---GCAGGCCACCGGCCTGGGCGTGGGCGACTT 1818 Query 196871 CGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGC-CACGTTGC 196929 ||| ||| |||||| | || ||||| || ||||| | || ||||| | || || Sbjct 1819 CGTGCACACGCTGGGCGATGCGCACCTGTATTCGAACCACTTCGAGCAGGCGCGCG-AGC 1877 Query 196930 AGCTCTCCCGTGTACCGCATGATCTGCCTAAGCT 196963 |||| || |||| ||||| | ||||| | ||| Sbjct 1878 AGCTGTCGCGTGAACCGCGCGCGCTGCCGACGCT 1911 >seq9538 Length=646221 Score = 206 bits (228), Expect = 4e-48 Identities = 189/239 (79%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| |||||||| ||||| ||| | ||||| |||||||||||||| || ||| | Sbjct 486501 GACCGCACCGGCACCGGCACACGCTCGGTGTTCGGCTATCAGATGCGTTTCGATCTGGCC 486560 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 | || |||||| || | |||||||| || |||||||| || |||||||||||||| Sbjct 486561 GACGGCTTCCCGGTGCTTACCACCAAGAAACTGCACCTGAAGTCGATCATCCACGAACTT 486620 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 ||||||| ||| |||||| ||||||||| | |||||||| ||| || ||||| ||| Sbjct 486621 CTGTGGTTTCTGGCCGGCGATACCAACATCAAATATCTGAACGACCACGGCGTCACCATC 486680 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 ||||| |||||||| |||| | |||||||| ||||| ||||| || ||||||||||| Sbjct 486681 TGGGACGAGTGGGCGGATGCCAAGGGCGATCTCGGCCCGGTCTATGGCAAGCAGTGGCG 486739 >seq6415 Length=247467 Score = 185 bits (204), Expect = 1e-41 Identities = 189/247 (77%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| || ||||| ||||| | | ||||| ||||| || || || ||| | Sbjct 52969 GACCGCACGGGCACCGGCACGCTGGGCGTGTTCGGCCGGCAGATCCGCTTCGATCTGGCC 53028 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 || || |||||| | | ||| |||| ||| |||||||||| || |||||| ||| ||| Sbjct 53029 AAGGGCTTCCCGGTTCTGACCTCCAAGAAGCTGCACCTGCGCTCGATCATCATCGAGCTG 53088 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 ||||||||||||| ||||||||||||||| || || || |||||| ||| | ||| Sbjct 53089 CTGTGGTTCCTGAAGGGCGACACCAACATCGCCTACCTCAAGGACAACGGCGTGCGCATC 53148 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCGT 196310 ||||| |||||||| || ||| | |||||||||||||| |||||||| ||||||||||| Sbjct 53149 TGGGACGAGTGGGCCGACGAAAACGGCGATCTTGGCCCGGTCTACGGCAAGCAGTGGCGC 53208 Query 196311 GCATGGG 196317 | |||| Sbjct 53209 TCGTGGG 53215 >seq7053 Length=464797 Score = 183 bits (202), Expect = 5e-41 Identities = 188/246 (76%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| ||||||||||| || ||| | ||||| || |||||||| || ||||| | Sbjct 70840 GACCGCACCGGCACGGGTACGCGCTCGGTCTTCGGTTACCAGATGCGCTTCGACCTTTCC 70781 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 |||| || ||| | |||||||||| ||| |||| ||||| || |||||||| ||| || Sbjct 70780 GAAGGTTTTCCGGTTCTCACCACCAAGAAGCTGCATCTGCGCTCCATCATCCATGAATTG 70721 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 ||||||||||||| ||||| ||||| ||| ||||| || || ||| ||| ||| Sbjct 70720 CTGTGGTTCCTGAAGGGCGATACCAATATCGCCTATCTCAAGGAAAACGGCGTTTCCATC 70661 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCGT 196310 ||||| || ||||| || || | |||||||| ||||| ||||| ||| |||||||||| Sbjct 70660 TGGGACGAATGGGCCGACGAGAACGGCGATCTCGGCCCGGTCTATGGTGCGCAGTGGCGT 70601 Query 196311 GCATGG 196316 | ||| Sbjct 70600 TCCTGG 70595 Score = 91.5 bits (100), Expect = 2e-13 Identities = 187/275 (68%), Gaps = 16/275 (6%) Strand=Plus/Minus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808 |||||||| ||||| || |||||| ||| || |||||||||| || |||||||||||| Sbjct 70423 CTGTCCTGCCAGCTCTATCAGCGCTCTGCCGATATCTTCCTCGGCGTGCCGTTCAACATC 70364 Query 196809 GCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCA---ATATGGTGGCGGGT 196865 || || || || ||| || | |||||||| |||||||| || | ||||| Sbjct 70363 GCCTCCTATGCGCTGCTGACACTGATGGTGGC---GCAGGTCACGGGCCTGAAGCCGGGT 70307 Query 196866 GATTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACG 196925 |||||||| ||| || || | ||| | || | || ||| | || ||||| | Sbjct 70306 GATTTCGTTCATACGCTGGGTGACGCGCATATCTATGCCAATCATTTCGAGCAGGCGCGG 70247 Query 196926 TTGCAGCTCTCCCGTGTACCGCATGATCTGCCTAAGCTCGTTATCAA-----ACGTAAAC 196980 ||||| | |||| ||| | | ||||| | | | ||||| ||||||| Sbjct 70246 CTGCAGATGACCCGCACGCCGAAGGCCCTGCCGACGATGCGCATCAACCCTGACGTAAA- 70188 Query 196981 CGGATTCCATTTTCGACTATAAGTTCGAAGATTTT 197015 ||| | |||||| || |||||||||||| ||| Sbjct 70187 -GGA---CCTTTTCGCCTTTAAGTTCGAAGACTTT 70157 >seq9470 Length=127963 Score = 170 bits (188), Expect = 3e-37 Identities = 188/248 (76%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| |||||||| |||||| | | ||||| |||||||| || |||||| || Sbjct 53204 GACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGCCGCCAGATGCGCTTCGACCTG-GC 53146 Query 196131 AAAGGG-TTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACT 196189 ||| || |||||| | |||||||| ||| |||||||||| || |||||| ||| || Sbjct 53145 GCGGGGCTTTCCGCTGCTGACCACCAAGAAGCTGCACCTGCGCTCGATCATCGTCGAGCT 53086 Query 196190 GTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTAT 196249 ||||||||||| |||||| ||||||||| | ||||| |||||| ||||| || Sbjct 53085 TCTGTGGTTCCTGCGCGGCGAGACCAACATCGCCTGGCTGAAGGACAACGGGGTCAGCAT 53026 Query 196250 CTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 |||||| || ||||| || | || ||||| || || || |||||||| ||||||||||| Sbjct 53025 CTGGGACGAATGGGCCGACGCCGAGGGCGAGCTCGGTCCGGTCTACGGCAAGCAGTGGCG 52966 Query 196310 TGCATGGG 196317 | |||| Sbjct 52965 CTCGTGGG 52958 >seq9639 Length=103419 Score = 138 bits (152), Expect = 2e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 |||||||||||||||||||| | | ||||| | |||||||| || |||||| | Sbjct 4294 GACCGTACCGGCACGGGCACGCGCAGCGTGTTCGGCCACCAGATGCGCTTCGACCTGTCC 4235 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 |||| || ||||||||||||||||| ||| ||||||| || ||||||| |||||| Sbjct 4234 GAAGGCTTTCCGCTGGTCACCACCAAGAAGGTGCACCTCAAGTCCATCATCCTGGAACTG 4175 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 ||||||||||| |||||||| ||| | | | ||| | || | | || ||| Sbjct 4174 CTGTGGTTCCTGCGCGGCGACAGCAATGTGCGCTGGCTGCAGGAGCGCGGCTGCACCATC 4115 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 ||||| || ||||| || || ||||| || ||||| ||||| || ||| ||||| Sbjct 4114 TGGGACGAATGGGCCCGCGAGGACGGCGACCTGGGCCCGGTCTATGGCGTGCAATGGCG 4056 Score = 100 bits (110), Expect = 4e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 196754 CTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATCGCTTC 196813 ||| ||||| ||||||||||| || ||| ||||||| || || || ||||||||||| Sbjct 3872 CTGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCTTCAACATCGCCAG 3813 Query 196814 GTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGATTTCGT 196873 ||||| ||| || |||||| |||| ||||| | | ||| || ||| || ||| | Sbjct 3812 CTACGCGCTGCTGACCCACATGCTGGCCCAGCAATGCGACCTGGAGGTGGGCGACTTCAT 3753 Query 196874 CTGGACGGGCGGCGA 196888 |||||| |||||||| Sbjct 3752 CTGGACCGGCGGCGA 3738 >seq11739 Length=237542 Score = 114 bits (126), Expect = 2e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 196062 GAGAAAGCTGACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTT 196121 || |||| ||| ||||| || || || || ||| | || || |||| ||||||||| Sbjct 9430 GACAAAGGTGATCGTACTGGTACAGGTACTCGTTCTGTATTTGGTCATCAAATGCGTTTT 9371 Query 196122 GACCTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATC 196181 ||| || |||||||| ||||| | ||||| ||||| | || | || || || | Sbjct 9370 GACTTGTCAAAAGGGTTTCCGCTACTAACCACTAAAAAAATTCATTTCCGCTCCATTGTG 9311 Query 196182 CACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAAC 196241 |||||| |||||||||| || |||||||||||| | || ||||| |||||||| || Sbjct 9310 ATTGAACTGCTGTGGTTCCTAAAAGGCGACACCAACGTTCAATATCTTAAAGACAATAAA 9251 Query 196242 GTCAGTATCTGGGATGAGTGG 196262 || || |||||||| ||| Sbjct 9250 GTTTCGATTTGGGATGAATGG 9230 >seq646 Length=687 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 196140 CCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGTTGTGGTTC 196199 ||| || |||| ||||| ||| ||| || | ||| | ||||| ||| | |||||| Sbjct 687 CCGATGCTCACGACCAAGAAGCTGCCGCTCAAGGCGATCGTGCACGAGCTGCTCTGGTTC 628 Query 196200 CTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTGGGATGAG 196259 ||| |||||||||||||||| | || ||| | ||| ||||||||| |||||||| ||| Sbjct 627 CTGGCCGGCGACACCAACATCAAATACCTGCACGACCACAACGTCACGATCTGGGACGAG 568 Query 196260 TGGGCAGA 196267 || || || Sbjct 567 TGAGCGGA 560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770162199298440