Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031224.1
Length=59443
Score E
Sequences producing significant alignments: (Bits) Value
seq9639 174 6e-39
seq7053 141 4e-29
seq6415 138 4e-28
seq9538 132 2e-26
seq9470 127 8e-25
>seq9639
Length=103419
Score = 174 bits (192), Expect = 6e-39
Identities = 356/523 (68%), Gaps = 16/523 (3%)
Strand=Plus/Minus
Query 51810 GGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTC----CCATCAGTGGTCGGGGAGTT 51865
||||| ||||| ||||||||||||||||||| || |||||| || ||| |
Sbjct 4231 GGCTTTCCGCTGGTCACCACCAAGAAGGTGCACCTCAAGTCCATCA----TCCTGGAACT 4176
Query 51866 GCTGTGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCAT 51925
||||||||| || ||| | || || | || || || |||| || |||
Sbjct 4175 GCTGTGGTTCCTGCGCGGCGACAGCAATGTGCGCTGGCTGCAGGAGCGCGGCTGCACCAT 4116
Query 51926 TTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCG 51985
|||||||||||||| || | || ||||||| || || ||||| ||| |||||
Sbjct 4115 CTGGGACGAATGGGCCCGCGAGGACGGCGACCTGGGCCCGGTCTATGGCGTGCAATGGCG 4056
Query 51986 TAGTTGG--GATGCTGGT-GGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTCAAATC 52042
| ||| || || || |||||| | |||||| |||||| ||||| |||||
Sbjct 4055 CAACTGGCCGACGCCGGACGGCGGCCA---CATCGACCAGATCGCCGAAGTGGTCAAGCA 3999
Query 52043 AATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTT 52102
| |||| | | || || || || || ||| ||| || ||||| |||| || |
Sbjct 3998 GCTCAAGAGCAACCCGGACAGCCGCCGCATCATCGTCAGCGCCTGGAACGTGGCCGACCT 3939
Query 52103 GGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAA 52162
| | |||||| | |||||||| | | ||||| ||||| || || || || ||
Sbjct 3938 GCCGCAGATGGCGCTCATGCCCTGCCACGCCTTCTTCCAGTTCTACGTGGCCGACGGCAA 3879
Query 52163 GCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACAT 52222
||| ||||| |||| ||||| || ||||| ||| |||||||||| || |||||
Sbjct 3878 GCTCAGCTGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCTTCAACAT 3819
Query 52223 TGCCAGCTATTCCTTGCTGACGCATCTGATTGCTCGAGCAGTTGG-CCTTGATGTTGGTG 52281
|||||||| | ||||||| || || | || | |||| | | ||| || || || |
Sbjct 3818 CGCCAGCTACGCGCTGCTGACCCACATGCTGGCCC-AGCAATGCGACCTGGAGGTGGGCG 3760
Query 52282 AATTCATTTGGACTGGTGGCGACGTCCATATCTACAACAACCA 52324
| ||||| ||||| || |||||| ||| ||||||||||||||
Sbjct 3759 ACTTCATCTGGACCGGCGGCGACTGCCACATCTACAACAACCA 3717
>seq7053
Length=464797
Score = 141 bits (156), Expect = 4e-29
Identities = 298/440 (68%), Gaps = 7/440 (2%)
Strand=Plus/Minus
Query 51807 AAGGGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTCCCATCAGTGGTCGGGGAGTTG 51866
|||| |||| | || |||||||||||||| ||||| | | || | || || |||
Sbjct 70779 AAGGTTTTCCGGTTC-TCACCACCAAGAAGCTGCATCTGCGCTCCATCATCCATGAATTG 70721
Query 51867 CTGTGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCATT 51926
|||||||| || |||| ||| || || | ||||| | | ||||||| |||
Sbjct 70720 CTGTGGTTCCTGAAGGGCGATACCAATATCGCCTATCTCAAGGAAAACGGCGTTTCCATC 70661
Query 51927 TGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCGT 51986
|||||||||||||| || || || || | || || || || |||||| ||||||||||
Sbjct 70660 TGGGACGAATGGGCCGACGAGAACGGCGATCTCGGCCCGGTCTATGGTGCGCAGTGGCGT 70601
Query 51987 AGTTGG--GATGCTGG-TGGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTCAAATCA 52043
||| | || || ||| || | ||||| |||||| | || |
Sbjct 70600 TCCTGGCCGGCGCCGGACGGCCGCCA---TATCGACCAGATCGCGCTTCTGATCGAGGGT 70544
Query 52044 ATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTG 52103
| |||| | | || || || || ||||| || || || ||||| || ||
Sbjct 70543 CTGAAGACCAACCCGAATTCCCGTCGTCACATCGTTTCGGCGTGGAACCCGGCGCTGGTG 70484
Query 52104 GATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAG 52163
|| || ||||||||| | ||||| || || ||||| |||||||| | || || |||
Sbjct 70483 GACGAAATGGCGTTGCCGCCCTGTCACTGCCTGTTCCAGTTCTATGTTTCCGATGGAAAG 70424
Query 52164 CTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATT 52223
|| || ||||| | |||||||| |||||||| || ||| | ||||| ||||| |||||
Sbjct 70423 CTGTCCTGCCAGCTCTATCAGCGCTCTGCCGATATCTTCCTCGGCGTGCCGTTCAACATC 70364
Query 52224 GCCAGCTATTCCTTGCTGAC 52243
||| |||| | |||||||
Sbjct 70363 GCCTCCTATGCGCTGCTGAC 70344
>seq6415
Length=247467
Score = 138 bits (152), Expect = 4e-28
Identities = 296/439 (67%), Gaps = 4/439 (1%)
Strand=Plus/Plus
Query 51807 AAGGGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTCCCATCAGTGGTCGGGGAGTTG 51866
|||||||||||| | | ||| |||||||| |||| | | || | || ||| ||
Sbjct 53029 AAGGGCTTCCCGGTTCTGACCTCCAAGAAGCTGCACCTGCGCTCGATCATCATCGAGCTG 53088
Query 51867 CTGTGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCATT 51926
|||||||| || |||| || ||| || | | ||| | | ||||||| ||||
Sbjct 53089 CTGTGGTTCCTGAAGGGCGACACCAACATCGCCTACCTCAAGGACAACGGCGTGCGCATC 53148
Query 51927 TGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCG- 51985
|||||||| ||||| || ||||| || | || || || || || || |||||||||||
Sbjct 53149 TGGGACGAGTGGGCCGACGAAAACGGCGATCTTGGCCCGGTCTACGGCAAGCAGTGGCGC 53208
Query 51986 TAGTTGG-GATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTCAAATCAA 52044
| || || || || | | ||| || ||||| |||||| | | ||| ||
Sbjct 53209 TCGTGGGCGACGCCG--GACGGGCGCGTGATCGACCAGATCGCCAACCTGGTCGAAAACC 53266
Query 52045 TTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTGG 52104
| |||| | |||| || || || ||||| ||| | || ||||| | ||| | |
Sbjct 53267 TAAAGACCAATCCAAGCAGCCGCCGCCACATCGTCACGGCCTGGAACCCCGCCGATGTCG 53326
Query 52105 ATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGC 52164
| || ||||| || | |||||||| || ||||| |||| || || || || ||||
Sbjct 53327 ACGACATGGCCCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTTCGTCGCGGACGGAAAGC 53386
Query 52165 TTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTG 52224
| ||||| | ||||| || |||||| ||||||| || || ||||| ||||| |
Sbjct 53387 TGAGCTGCCAGCTCTATCAACGCAGCGCCGACGTGTTCTTAGGGGTGCCGTTCAACATCG 53446
Query 52225 CCAGCTATTCCTTGCTGAC 52243
|| ||| || |||||||
Sbjct 53447 CCTCCTACGCCCTGCTGAC 53465
>seq9538
Length=646221
Score = 132 bits (146), Expect = 2e-26
Identities = 324/489 (66%), Gaps = 14/489 (3%)
Strand=Plus/Plus
Query 51762 GGTACTCGATCGGTTTTCGGCGCTCAACTTAGGTATGACCTGAGTAAGGGCTTCCCGCTC 51821
|| || || ||||| |||||| ||| | | | || ||| | ||||||||| |
Sbjct 486516 GGCACACGCTCGGTGTTCGGCTATCAGATGCGTTTCGATCTGGCCGACGGCTTCCCGGTG 486575
Query 51822 ATCACCACCAAGAAGGTGCATTTCCCATCAGTGGTCGGGGAGTTGCTGTGGTTGCTTTCG 51881
| ||||||||||| |||| | || | || || | |||||||| || |
Sbjct 486576 CTTACCACCAAGAAACTGCACCTGAAGTCGATCATCCACGAACTTCTGTGGTTTCTGGCC 486635
Query 51882 GGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCATTTGGGACGAATGGGCG 51941
||| ||| ||| |||| |||| | | ||||||||| ||| |||||||| ||||||
Sbjct 486636 GGCGATACCAACATCAAATATCTGAACGACCACGGCGTCACCATCTGGGACGAGTGGGCG 486695
Query 51942 GATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCGTAGTTG---GGATGCT 51998
|||| || || | || || || || ||||| ||||||||||| || ||||||
Sbjct 486696 GATGCCAAGGGCGATCTCGGCCCGGTCTATGGCAAGCAGTGGCGCTCCTGGCCGGATGCG 486755
Query 51999 GGTGGCGGCAAGGTCATCGATCAGATCCATGAAGT----CGTCAAATCAATTAAGAACGA 52054
|||||||| |||||| |||||| | | | || ||||| | | |
Sbjct 486756 CATGGCGGCA---CCATCGACCAGATCGAAAATCTGCTCCGCGAAATCCGCT----GCAA 486808
Query 52055 TCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTGGATGATATGGC 52114
|||| || || |||| || ||||| || |||||| || || |||| | |||||
Sbjct 486809 TCCTTATTCACGCCGGCTGATCGTCTCGGCATGGAATCCGGCCGAGGTGGAGGCAATGGC 486868
Query 52115 GTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCGTGCCA 52174
| || | |||||||| || ||||| ||||| || | || || ||| || |||||
Sbjct 486869 GCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGTTTCGGACGGACGGCTGTCATGCCA 486928
Query 52175 TTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGCTATTC 52234
| || ||||| || || ||||| || | ||||| ||||| ||||| || |||| |
Sbjct 486929 GCTCTACCAGCGTTCCGCGGACATCTTTCTCGGCGTGCCGTTCAACATCGCTTCCTATGC 486988
Query 52235 CTTGCTGAC 52243
|||| ||
Sbjct 486989 GCTGCTCAC 486997
>seq9470
Length=127963
Score = 127 bits (140), Expect = 8e-25
Identities = 289/435 (66%), Gaps = 0/435 (0%)
Strand=Plus/Minus
Query 51809 GGGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTCCCATCAGTGGTCGGGGAGTTGCT 51868
|||||| ||||| | |||||||||||| |||| | | || | ||| ||| | ||
Sbjct 53142 GGGCTTTCCGCTGCTGACCACCAAGAAGCTGCACCTGCGCTCGATCATCGTCGAGCTTCT 53083
Query 51869 GTGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCATTTG 51928
|||||| || ||| || ||| || | || | | |||| |||||||| ||
Sbjct 53082 GTGGTTCCTGCGCGGCGAGACCAACATCGCCTGGCTGAAGGACAACGGGGTCAGCATCTG 53023
Query 51929 GGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCGTAG 51988
|||||||||||| || | | || | || ||||| || || || |||||||||||
Sbjct 53022 GGACGAATGGGCCGACGCCGAGGGCGAGCTCGGTCCGGTCTACGGCAAGCAGTGGCGCTC 52963
Query 51989 TTGGGATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTCAAATCAATTAA 52048
|||| || | |||| || ||||| |||||| | || ||| | | ||
Sbjct 52962 GTGGGCGGCGCCCGACGGCCGCGTGATCGACCAGATCGCCAATGTGGTCGAGGCGATCCG 52903
Query 52049 GAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTGGATGA 52108
| | || | || || || ||||| ||||| || ||||| || || | || ||
Sbjct 52902 CGCCAACCCCAACAGCCGCCGCCACATCGTCTCGGCCTGGAACCCGGCCGACGTCGACGA 52843
Query 52109 TATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTC 52168
||||| || | || ||||| || ||||| |||| || || || || || || ||
Sbjct 52842 CATGGCCCTGCCGCCGTGCCACTGCCTGTTCCAGTTCTTCGTGGCGGACGGAAAACTGTC 52783
Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228
|||| | || ||||| || |||||| ||||| | ||||| ||||| ||||| |||
Sbjct 52782 CTGCCTGCTTTACCAGCGCTCGGCCGACCTGTTCCTCGGCGTGCCGTTCAACATCGCCTC 52723
Query 52229 CTATTCCTTGCTGAC 52243
||| || |||||||
Sbjct 52722 CTACGCCCTGCTGAC 52708
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 190062005963990
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