Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq9639 174 6e-39 seq7053 141 4e-29 seq6415 138 4e-28 seq9538 132 2e-26 seq9470 127 8e-25 >seq9639 Length=103419 Score = 174 bits (192), Expect = 6e-39 Identities = 356/523 (68%), Gaps = 16/523 (3%) Strand=Plus/Minus Query 51810 GGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTC----CCATCAGTGGTCGGGGAGTT 51865 ||||| ||||| ||||||||||||||||||| || |||||| || ||| | Sbjct 4231 GGCTTTCCGCTGGTCACCACCAAGAAGGTGCACCTCAAGTCCATCA----TCCTGGAACT 4176 Query 51866 GCTGTGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCAT 51925 ||||||||| || ||| | || || | || || || |||| || ||| Sbjct 4175 GCTGTGGTTCCTGCGCGGCGACAGCAATGTGCGCTGGCTGCAGGAGCGCGGCTGCACCAT 4116 Query 51926 TTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCG 51985 |||||||||||||| || | || ||||||| || || ||||| ||| ||||| Sbjct 4115 CTGGGACGAATGGGCCCGCGAGGACGGCGACCTGGGCCCGGTCTATGGCGTGCAATGGCG 4056 Query 51986 TAGTTGG--GATGCTGGT-GGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTCAAATC 52042 | ||| || || || |||||| | |||||| |||||| ||||| ||||| Sbjct 4055 CAACTGGCCGACGCCGGACGGCGGCCA---CATCGACCAGATCGCCGAAGTGGTCAAGCA 3999 Query 52043 AATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTT 52102 | |||| | | || || || || || ||| ||| || ||||| |||| || | Sbjct 3998 GCTCAAGAGCAACCCGGACAGCCGCCGCATCATCGTCAGCGCCTGGAACGTGGCCGACCT 3939 Query 52103 GGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAA 52162 | | |||||| | |||||||| | | ||||| ||||| || || || || || Sbjct 3938 GCCGCAGATGGCGCTCATGCCCTGCCACGCCTTCTTCCAGTTCTACGTGGCCGACGGCAA 3879 Query 52163 GCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACAT 52222 ||| ||||| |||| ||||| || ||||| ||| |||||||||| || ||||| Sbjct 3878 GCTCAGCTGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCTTCAACAT 3819 Query 52223 TGCCAGCTATTCCTTGCTGACGCATCTGATTGCTCGAGCAGTTGG-CCTTGATGTTGGTG 52281 |||||||| | ||||||| || || | || | |||| | | ||| || || || | Sbjct 3818 CGCCAGCTACGCGCTGCTGACCCACATGCTGGCCC-AGCAATGCGACCTGGAGGTGGGCG 3760 Query 52282 AATTCATTTGGACTGGTGGCGACGTCCATATCTACAACAACCA 52324 | ||||| ||||| || |||||| ||| |||||||||||||| Sbjct 3759 ACTTCATCTGGACCGGCGGCGACTGCCACATCTACAACAACCA 3717 >seq7053 Length=464797 Score = 141 bits (156), Expect = 4e-29 Identities = 298/440 (68%), Gaps = 7/440 (2%) Strand=Plus/Minus Query 51807 AAGGGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTCCCATCAGTGGTCGGGGAGTTG 51866 |||| |||| | || |||||||||||||| ||||| | | || | || || ||| Sbjct 70779 AAGGTTTTCCGGTTC-TCACCACCAAGAAGCTGCATCTGCGCTCCATCATCCATGAATTG 70721 Query 51867 CTGTGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCATT 51926 |||||||| || |||| ||| || || | ||||| | | ||||||| ||| Sbjct 70720 CTGTGGTTCCTGAAGGGCGATACCAATATCGCCTATCTCAAGGAAAACGGCGTTTCCATC 70661 Query 51927 TGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCGT 51986 |||||||||||||| || || || || | || || || || |||||| |||||||||| Sbjct 70660 TGGGACGAATGGGCCGACGAGAACGGCGATCTCGGCCCGGTCTATGGTGCGCAGTGGCGT 70601 Query 51987 AGTTGG--GATGCTGG-TGGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTCAAATCA 52043 ||| | || || ||| || | ||||| |||||| | || | Sbjct 70600 TCCTGGCCGGCGCCGGACGGCCGCCA---TATCGACCAGATCGCGCTTCTGATCGAGGGT 70544 Query 52044 ATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTG 52103 | |||| | | || || || || ||||| || || || ||||| || || Sbjct 70543 CTGAAGACCAACCCGAATTCCCGTCGTCACATCGTTTCGGCGTGGAACCCGGCGCTGGTG 70484 Query 52104 GATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAG 52163 || || ||||||||| | ||||| || || ||||| |||||||| | || || ||| Sbjct 70483 GACGAAATGGCGTTGCCGCCCTGTCACTGCCTGTTCCAGTTCTATGTTTCCGATGGAAAG 70424 Query 52164 CTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATT 52223 || || ||||| | |||||||| |||||||| || ||| | ||||| ||||| ||||| Sbjct 70423 CTGTCCTGCCAGCTCTATCAGCGCTCTGCCGATATCTTCCTCGGCGTGCCGTTCAACATC 70364 Query 52224 GCCAGCTATTCCTTGCTGAC 52243 ||| |||| | ||||||| Sbjct 70363 GCCTCCTATGCGCTGCTGAC 70344 >seq6415 Length=247467 Score = 138 bits (152), Expect = 4e-28 Identities = 296/439 (67%), Gaps = 4/439 (1%) Strand=Plus/Plus Query 51807 AAGGGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTCCCATCAGTGGTCGGGGAGTTG 51866 |||||||||||| | | ||| |||||||| |||| | | || | || ||| || Sbjct 53029 AAGGGCTTCCCGGTTCTGACCTCCAAGAAGCTGCACCTGCGCTCGATCATCATCGAGCTG 53088 Query 51867 CTGTGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCATT 51926 |||||||| || |||| || ||| || | | ||| | | ||||||| |||| Sbjct 53089 CTGTGGTTCCTGAAGGGCGACACCAACATCGCCTACCTCAAGGACAACGGCGTGCGCATC 53148 Query 51927 TGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCG- 51985 |||||||| ||||| || ||||| || | || || || || || || ||||||||||| Sbjct 53149 TGGGACGAGTGGGCCGACGAAAACGGCGATCTTGGCCCGGTCTACGGCAAGCAGTGGCGC 53208 Query 51986 TAGTTGG-GATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTCAAATCAA 52044 | || || || || | | ||| || ||||| |||||| | | ||| || Sbjct 53209 TCGTGGGCGACGCCG--GACGGGCGCGTGATCGACCAGATCGCCAACCTGGTCGAAAACC 53266 Query 52045 TTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTGG 52104 | |||| | |||| || || || ||||| ||| | || ||||| | ||| | | Sbjct 53267 TAAAGACCAATCCAAGCAGCCGCCGCCACATCGTCACGGCCTGGAACCCCGCCGATGTCG 53326 Query 52105 ATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGC 52164 | || ||||| || | |||||||| || ||||| |||| || || || || |||| Sbjct 53327 ACGACATGGCCCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTTCGTCGCGGACGGAAAGC 53386 Query 52165 TTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTG 52224 | ||||| | ||||| || |||||| ||||||| || || ||||| ||||| | Sbjct 53387 TGAGCTGCCAGCTCTATCAACGCAGCGCCGACGTGTTCTTAGGGGTGCCGTTCAACATCG 53446 Query 52225 CCAGCTATTCCTTGCTGAC 52243 || ||| || ||||||| Sbjct 53447 CCTCCTACGCCCTGCTGAC 53465 >seq9538 Length=646221 Score = 132 bits (146), Expect = 2e-26 Identities = 324/489 (66%), Gaps = 14/489 (3%) Strand=Plus/Plus Query 51762 GGTACTCGATCGGTTTTCGGCGCTCAACTTAGGTATGACCTGAGTAAGGGCTTCCCGCTC 51821 || || || ||||| |||||| ||| | | | || ||| | ||||||||| | Sbjct 486516 GGCACACGCTCGGTGTTCGGCTATCAGATGCGTTTCGATCTGGCCGACGGCTTCCCGGTG 486575 Query 51822 ATCACCACCAAGAAGGTGCATTTCCCATCAGTGGTCGGGGAGTTGCTGTGGTTGCTTTCG 51881 | ||||||||||| |||| | || | || || | |||||||| || | Sbjct 486576 CTTACCACCAAGAAACTGCACCTGAAGTCGATCATCCACGAACTTCTGTGGTTTCTGGCC 486635 Query 51882 GGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCATTTGGGACGAATGGGCG 51941 ||| ||| ||| |||| |||| | | ||||||||| ||| |||||||| |||||| Sbjct 486636 GGCGATACCAACATCAAATATCTGAACGACCACGGCGTCACCATCTGGGACGAGTGGGCG 486695 Query 51942 GATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCGTAGTTG---GGATGCT 51998 |||| || || | || || || || ||||| ||||||||||| || |||||| Sbjct 486696 GATGCCAAGGGCGATCTCGGCCCGGTCTATGGCAAGCAGTGGCGCTCCTGGCCGGATGCG 486755 Query 51999 GGTGGCGGCAAGGTCATCGATCAGATCCATGAAGT----CGTCAAATCAATTAAGAACGA 52054 |||||||| |||||| |||||| | | | || ||||| | | | Sbjct 486756 CATGGCGGCA---CCATCGACCAGATCGAAAATCTGCTCCGCGAAATCCGCT----GCAA 486808 Query 52055 TCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTGGATGATATGGC 52114 |||| || || |||| || ||||| || |||||| || || |||| | ||||| Sbjct 486809 TCCTTATTCACGCCGGCTGATCGTCTCGGCATGGAATCCGGCCGAGGTGGAGGCAATGGC 486868 Query 52115 GTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCGTGCCA 52174 | || | |||||||| || ||||| ||||| || | || || ||| || ||||| Sbjct 486869 GCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGTTTCGGACGGACGGCTGTCATGCCA 486928 Query 52175 TTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGCTATTC 52234 | || ||||| || || ||||| || | ||||| ||||| ||||| || |||| | Sbjct 486929 GCTCTACCAGCGTTCCGCGGACATCTTTCTCGGCGTGCCGTTCAACATCGCTTCCTATGC 486988 Query 52235 CTTGCTGAC 52243 |||| || Sbjct 486989 GCTGCTCAC 486997 >seq9470 Length=127963 Score = 127 bits (140), Expect = 8e-25 Identities = 289/435 (66%), Gaps = 0/435 (0%) Strand=Plus/Minus Query 51809 GGGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTCCCATCAGTGGTCGGGGAGTTGCT 51868 |||||| ||||| | |||||||||||| |||| | | || | ||| ||| | || Sbjct 53142 GGGCTTTCCGCTGCTGACCACCAAGAAGCTGCACCTGCGCTCGATCATCGTCGAGCTTCT 53083 Query 51869 GTGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCATTTG 51928 |||||| || ||| || ||| || | || | | |||| |||||||| || Sbjct 53082 GTGGTTCCTGCGCGGCGAGACCAACATCGCCTGGCTGAAGGACAACGGGGTCAGCATCTG 53023 Query 51929 GGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCGTAG 51988 |||||||||||| || | | || | || ||||| || || || ||||||||||| Sbjct 53022 GGACGAATGGGCCGACGCCGAGGGCGAGCTCGGTCCGGTCTACGGCAAGCAGTGGCGCTC 52963 Query 51989 TTGGGATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTCAAATCAATTAA 52048 |||| || | |||| || ||||| |||||| | || ||| | | || Sbjct 52962 GTGGGCGGCGCCCGACGGCCGCGTGATCGACCAGATCGCCAATGTGGTCGAGGCGATCCG 52903 Query 52049 GAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTGGATGA 52108 | | || | || || || ||||| ||||| || ||||| || || | || || Sbjct 52902 CGCCAACCCCAACAGCCGCCGCCACATCGTCTCGGCCTGGAACCCGGCCGACGTCGACGA 52843 Query 52109 TATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTC 52168 ||||| || | || ||||| || ||||| |||| || || || || || || || Sbjct 52842 CATGGCCCTGCCGCCGTGCCACTGCCTGTTCCAGTTCTTCGTGGCGGACGGAAAACTGTC 52783 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 |||| | || ||||| || |||||| ||||| | ||||| ||||| ||||| ||| Sbjct 52782 CTGCCTGCTTTACCAGCGCTCGGCCGACCTGTTCCTCGGCGTGCCGTTCAACATCGCCTC 52723 Query 52229 CTATTCCTTGCTGAC 52243 ||| || ||||||| Sbjct 52722 CTACGCCCTGCTGAC 52708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190062005963990