Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq9956 102 1e-16 seq9925 96.9 4e-15 seq7835 96.9 4e-15 seq9673 87.8 2e-12 seq7041 87.8 2e-12 seq551 87.8 2e-12 seq8237 84.2 3e-11 >seq9956 Length=123604 Score = 102 bits (112), Expect = 1e-16 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806 ||||||| ||||||||||||||||||| | ||||||||||| | |||||||||||||| Sbjct 116395 ATTCCTCGATAGCTCAGTCGGTAGAGCAACGGACTGTTAATCCGTGTGTCCCTGGTTCGA 116454 Query 19807 GCCCAGGTGGAGGAGC 19822 |||||||| ||||||| Sbjct 116455 GCCCAGGTCGAGGAGC 116470 >seq9925 Length=47282 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806 ||||||| |||||||||| ||||||||| ||||||||||| || ||||||||||||| Sbjct 28034 ATTCCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 27975 Query 19807 GCCCAGGTGGAGGAGC 19822 |||||||| ||||||| Sbjct 27974 GCCCAGGTTGAGGAGC 27959 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806 ||||||| |||||||||| ||||||||| ||||||||||| || ||||||||||||| Sbjct 28155 ATTCCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 28096 Query 19807 GCCCAGGTGGAGGAGC 19822 |||||||| ||||||| Sbjct 28095 GCCCAGGTTGAGGAGC 28080 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19748 TTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGAG 19807 |||||| |||||||||| ||||||||| ||||||||||| || |||||||||||||| Sbjct 28282 TTCCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGAG 28223 Query 19808 CCCAGGTGGAGGAGC 19822 ||||||| ||||||| Sbjct 28222 CCCAGGTTGAGGAGC 28208 >seq7835 Length=204203 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806 |||| || ||||||||||||||||||||| ||||||||||| | ||||||||||||| Sbjct 26110 ATTCTTCCATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGTCCCTGGTTCGA 26051 Query 19807 GCCCAGGTGGAGGAGC 19822 ||||||||||| |||| Sbjct 26050 GCCCAGGTGGAAGAGC 26035 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806 |||| | ||||||||||||||||||||| ||||||||||| | ||||||||||||| Sbjct 25792 ATTCTCCAATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGTCCCTGGTTCGA 25733 Query 19807 GCCCAGG-TGGAG 19818 ||||||| ||||| Sbjct 25732 GCCCAGGTTGGAG 25720 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806 |||| | ||||||||||||||||||||| ||||||||||| | ||||||||||||| Sbjct 26191 ATTCTCCAATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGTCCCTGGTTCGA 26132 Query 19807 GCCCAGG-TGGAG 19818 ||||||| ||||| Sbjct 26131 GCCCAGGTTGGAG 26119 >seq9673 Length=4878 Score = 87.8 bits (96), Expect = 2e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 165786 GTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTGT 165845 ||||||||| ||||||||||||| ||||||||||| || |||||||||||||| |||||| Sbjct 492 GTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCACAGGTTCGAATCCTGT 551 Query 165846 C 165846 | Sbjct 552 C 552 >seq7041 Length=191181 Score = 87.8 bits (96), Expect = 2e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 165787 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTG 165844 ||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 50773 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTG 50830 >seq551 Length=68878 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165774 GGTCAAGGGTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGG 165833 ||||| | | | ||||||||||||||||||||| | ||||||||||| | ||||||||| Sbjct 2917 GGTCATGCGCCTGTAGCTCAGTTGGATAGAGCATCCGCCTTCTAAGCGGATGGTCACAGG 2858 Query 165834 TTCGAGTCCTGTC 165846 ||||| ||||||| Sbjct 2857 TTCGAATCCTGTC 2845 >seq8237 Length=506431 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806 |||| | ||||||||||||||||||||| ||||||||||| | ||||||||||||| Sbjct 190062 ATTCTCCAATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGTCCCTGGTTCGA 190121 Query 19807 GCCCAGG-TGGAG 19818 ||||||| ||||| Sbjct 190122 GCCCAGGTTGGAG 190134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621953303023080