Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031235.1
Length=194437
Score E
Sequences producing significant alignments: (Bits) Value
seq9956 102 1e-16
seq9925 96.9 4e-15
seq7835 96.9 4e-15
seq9673 87.8 2e-12
seq7041 87.8 2e-12
seq551 87.8 2e-12
seq8237 84.2 3e-11
>seq9956
Length=123604
Score = 102 bits (112), Expect = 1e-16
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806
||||||| ||||||||||||||||||| | ||||||||||| | ||||||||||||||
Sbjct 116395 ATTCCTCGATAGCTCAGTCGGTAGAGCAACGGACTGTTAATCCGTGTGTCCCTGGTTCGA 116454
Query 19807 GCCCAGGTGGAGGAGC 19822
|||||||| |||||||
Sbjct 116455 GCCCAGGTCGAGGAGC 116470
>seq9925
Length=47282
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806
||||||| |||||||||| ||||||||| ||||||||||| || |||||||||||||
Sbjct 28034 ATTCCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 27975
Query 19807 GCCCAGGTGGAGGAGC 19822
|||||||| |||||||
Sbjct 27974 GCCCAGGTTGAGGAGC 27959
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806
||||||| |||||||||| ||||||||| ||||||||||| || |||||||||||||
Sbjct 28155 ATTCCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 28096
Query 19807 GCCCAGGTGGAGGAGC 19822
|||||||| |||||||
Sbjct 28095 GCCCAGGTTGAGGAGC 28080
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 19748 TTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGAG 19807
|||||| |||||||||| ||||||||| ||||||||||| || ||||||||||||||
Sbjct 28282 TTCCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGAG 28223
Query 19808 CCCAGGTGGAGGAGC 19822
||||||| |||||||
Sbjct 28222 CCCAGGTTGAGGAGC 28208
>seq7835
Length=204203
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806
|||| || ||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 26110 ATTCTTCCATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGTCCCTGGTTCGA 26051
Query 19807 GCCCAGGTGGAGGAGC 19822
||||||||||| ||||
Sbjct 26050 GCCCAGGTGGAAGAGC 26035
Score = 84.2 bits (92), Expect = 3e-11
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806
|||| | ||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 25792 ATTCTCCAATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGTCCCTGGTTCGA 25733
Query 19807 GCCCAGG-TGGAG 19818
||||||| |||||
Sbjct 25732 GCCCAGGTTGGAG 25720
Score = 84.2 bits (92), Expect = 3e-11
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806
|||| | ||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 26191 ATTCTCCAATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGTCCCTGGTTCGA 26132
Query 19807 GCCCAGG-TGGAG 19818
||||||| |||||
Sbjct 26131 GCCCAGGTTGGAG 26119
>seq9673
Length=4878
Score = 87.8 bits (96), Expect = 2e-12
Identities = 56/61 (92%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 165786 GTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTGT 165845
||||||||| ||||||||||||| ||||||||||| || |||||||||||||| ||||||
Sbjct 492 GTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCACAGGTTCGAATCCTGT 551
Query 165846 C 165846
|
Sbjct 552 C 552
>seq7041
Length=191181
Score = 87.8 bits (96), Expect = 2e-12
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 165787 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTG 165844
||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 50773 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTG 50830
>seq551
Length=68878
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165774 GGTCAAGGGTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGG 165833
||||| | | | ||||||||||||||||||||| | ||||||||||| | |||||||||
Sbjct 2917 GGTCATGCGCCTGTAGCTCAGTTGGATAGAGCATCCGCCTTCTAAGCGGATGGTCACAGG 2858
Query 165834 TTCGAGTCCTGTC 165846
||||| |||||||
Sbjct 2857 TTCGAATCCTGTC 2845
>seq8237
Length=506431
Score = 84.2 bits (92), Expect = 3e-11
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806
|||| | ||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 190062 ATTCTCCAATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGTCCCTGGTTCGA 190121
Query 19807 GCCCAGG-TGGAG 19818
||||||| |||||
Sbjct 190122 GCCCAGGTTGGAG 190134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 621953303023080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |