Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031242.1
Length=174307
Score E
Sequences producing significant alignments: (Bits) Value
seq9673 87.8 2e-12
seq7041 87.8 2e-12
seq551 84.2 2e-11
>seq9673
Length=4878
Score = 87.8 bits (96), Expect = 2e-12
Identities = 56/61 (92%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 159829 GTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTGT 159888
||||||||| ||||||||||||| ||||||||||| || |||||||||||||| ||||||
Sbjct 492 GTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCACAGGTTCGAATCCTGT 551
Query 159889 C 159889
|
Sbjct 552 C 552
>seq7041
Length=191181
Score = 87.8 bits (96), Expect = 2e-12
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 159830 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTG 159887
||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 50773 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTG 50830
>seq551
Length=68878
Score = 84.2 bits (92), Expect = 2e-11
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 159821 ATGGGTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCG 159880
||| | | ||||||||||||||||||||| | ||||||||||| | |||||||||||||
Sbjct 2913 ATGCGCCTGTAGCTCAGTTGGATAGAGCATCCGCCTTCTAAGCGGATGGTCACAGGTTCG 2854
Query 159881 AGTCCTGTC 159889
| |||||||
Sbjct 2853 AATCCTGTC 2845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557549428529880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |