Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031262.1
Length=54751
Score E
Sequences producing significant alignments: (Bits) Value
seq12569 286 1e-72
seq6089 205 3e-48
>seq12569
Length=80069
Score = 286 bits (316), Expect = 1e-72
Identities = 368/507 (73%), Gaps = 18/507 (4%)
Strand=Plus/Minus
Query 41194 CTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAC 41253
||||| |||||| || |||||||| | || |||||||| |||||| |||| |||
Sbjct 62692 CTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCGCCGAACTACGCCGAT 62633
Query 41254 TTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACGCCGCAG 41313
||||| ||||||||||||||||| ||||||||| |||||||||| ||| | ||| ||
Sbjct 62632 TTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGACTTTCTCGCCCCGGAG 62573
Query 41314 CTGCTGCGCATCCTTGCGCCCGGGCGGATCTACGCCTGCCATGTCAAGGACCGCATCTTG 41373
||||||||| | || ||||| || ||| | |||| ||| || |||||||| ||| ||
Sbjct 62572 CTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTGAAGGACCGGATCGTG 62513
Query 41374 TTCGGAAACGTCACCGGCGCAGGCGTTCCCACCGTCTCCCCGTTCCACGCCGA------G 41427
|| | |||||| ||| ||| ||||||| ||||||| | ||| |
Sbjct 62512 CCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTTCGCGGACGACTGCCGG 62453
Query 41428 GCGATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGC---ATGATCACCGTGGTC 41484
||| ||||| |||| |||||||| |||||||||| | || || | ||
Sbjct 62452 GCGTGCTTCC------GCAAGGCCGGCTTCGCCTACCTCGGCGAAAAGACCAACCTG--- 62402
Query 41485 ACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAG 41544
||||| || || || || ||||||||||| || |||||||||||| ||||||||||||
Sbjct 62401 ACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGGAGCGAGCAGTGCAAG 62342
Query 41545 GACGCTACGAAGATGGGCGTCGGCTCGCCGGAATACATTCTGTTGTTCCACAGGCCACAG 41604
|||| || ||||||| ||| ||||||| | | ||| |||||| || ||| |
Sbjct 62341 GACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTGTTCCGCAAGCCGCCC 62282
Query 41605 TCAGACCGGTCCAAGGGCTACGCCGACACCCCGGTCACCAAATCCAAGGACGATTACACT 41664
|| |||| |||||| || ||||||||| ||||| | || |||||| ||||
Sbjct 62281 TCCGACCTGTCCAACGGTTACGCCGACCGGCCGGTGTCGAAGGACAAGGATCGCTACAGC 62222
Query 41665 CGGGCCCGCTGGCAGGTCGACGCGCAC 41691
||||| ||||||||| |||||||||||
Sbjct 62221 CGGGCGCGCTGGCAGCTCGACGCGCAC 62195
Score = 197 bits (218), Expect = 5e-46
Identities = 451/666 (68%), Gaps = 21/666 (3%)
Strand=Plus/Minus
Query 39802 CACCAGCGCGATCTGGTGCGTTGGGCGGTC-GCCGGGGGTAGGCGCGCGATCTTCGCGGC 39860
|| ||||| | |||| | ||||||||| | | || ||| ||| | ||||| ||
Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGC-CGCCCTGTTCGCCGC 64014
Query 39861 GTTCGGCCTGGGCAAGACGGTGATGCAGCTGGAGATCGTGCG---CCTGTCGCTAGCCAA 39917
||||||||||| || | || | ||| ||||||| | ||| | || ||| || |
Sbjct 64013 CTTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTGCGCGGATCATG-CGCGAG---A 63958
Query 39918 GCATGGCGGTGGGCGAGGCTTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCA 39977
| ||| ||| ||| ||||||| || ||||| ||||||||| |||||| |
Sbjct 63957 TCTC--CGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCG 63900
Query 39978 CGACGCCAACATGCTGGGCATCGAAACCCGGTTTGTTCGCCGCACAGAAGAAGTCGGCGG 40037
|||||| |||||||||| | |||||| |||| || | || || | | ||
Sbjct 63899 GGACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGA 63840
Query 40038 ---CGACGGTATCTACCTCACCAACTACGAGAGCGTTCGCGATGGAAAGCTCGACCCGAC 40094
|| || ||||||| ||||||||||||| ||||| || || ||||||||||| |
Sbjct 63839 TCCCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCC-AT 63781
Query 40095 ACTG-TTCACGGCCGTCTCACTCGACGAGGCGAGCGTGCTGC---GCTCGTTCGGGTCCA 40150
||| ||| ||| || || || |||||||| ||||| |||| ||| ||| ||||
Sbjct 63780 CCTGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCA 63721
Query 40151 AGACGTACCAGTCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGCCACCG 40210
|||| | | |||| | ||||||||| ||| |||| || | ||||||||| |
Sbjct 63720 AGACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGG 63661
Query 40211 CCACGCCATCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGTTATCTCGGGGTGA 40270
||||||| ||||| ||| | || |||||| || ||| ||| | || || ||||
Sbjct 63660 CCACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGA 63601
Query 40271 TGGACACCGGTGCGGCGCTCACGCGTTGGTTCCAGCGGGAC-TCGACCAAGGCGAACAAC 40329
|||| ||| ||| || || | |||| ||| ||| ||| || | || || |
Sbjct 63600 TGGATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCG-ACGCC 63542
Query 40330 CTCACCCTGTACCCACACAAGGAGCGTGAGTTCTTCTTGTGGCTCAACACCTGGGCGGCG 40389
||||||||| |||| ||||| ||||| ||||||| ||||| | | ||||| |
Sbjct 63541 CTCACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGGTGCGCAAGCTGGGGTCTG 63482
Query 40390 TTCGTGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTATGACCTGCCGCCGCTG 40449
||||| || ||| || ||||| | || | |||||| ||||||||||| |||
Sbjct 63481 TTCGTCCAGCGGCCGAGCGATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCCCCTG 63422
Query 40450 GAGGTG 40455
|||||
Sbjct 63421 CAGGTG 63416
Score = 93.3 bits (102), Expect = 1e-14
Identities = 127/175 (73%), Gaps = 2/175 (1%)
Strand=Plus/Minus
Query 42967 TGCCCCTTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGAATCCTGGCGAG 43026
|||||| ||| ||||| ||||| ||||||||||||| | | || | || |||||
Sbjct 61909 TGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCGAGCCGGGCGAC 61850
Query 43027 TTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCGCTGAAACTCGGC 43086
|||||||||| ||||||||||| ||| |||||||| | || || | || | |||
Sbjct 61849 GTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCATCAAGCACGGG 61790
Query 43087 CGGCGTGGTCGTGGTG-TCGAGCTGAATCCGGGCTACTACTTCGATGCTGTCAAG 43140
| |||| | | || | ||||||||| |||| ||||| |||| | ||| |||
Sbjct 61789 C-GCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTGTGAAG 61736
>seq6089
Length=13452
Score = 205 bits (226), Expect = 3e-48
Identities = 471/695 (68%), Gaps = 36/695 (5%)
Strand=Plus/Minus
Query 39802 CACCAGCGCGATCTGGTGCGTTGGGCGGTCGCCGGGGGTAGGCGCGCGATCTTCGCGGCG 39861
|||||| ||| ||||| || ||||| |||| || || | |||||||||||||| |||
Sbjct 4773 CACCAGGCCGAGCTGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCG 4714
Query 39862 TTCGGCCTGGGCAAGACGGTGATGCAGCTGGAGATCGTGCGCCTG--TCGCTAGCCAAGC 39919
||||||||||||||| |||| ||||||||||||||| |||||| | | || ||| |||
Sbjct 4713 TTCGGCCTGGGCAAGTCGGTCATGCAGCTGGAGATCATGCGCCAGCTTGGC--GCCCAGC 4656
Query 39920 ATGGCGGTGGGCGAGGCTTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCACG 39979
||||| ||| || ||||||| |||||||| ||||| |||||| ||| | ||
Sbjct 4655 TGGGCGGCCGGC-AG--CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCG 4599
Query 39980 ACGCCAACATGCTGGGCATCGAAACCCGGTTT--GTTCGCCGCACAG--AAGAAGTCG-- 40033
|||| ||||||||| | | | ||| ||| | ||| | || | ||| |||
Sbjct 4598 ACGCGCTGATGCTGGGCCTGG--ATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCT 4541
Query 40034 ----GCGG------CGA-CGG---TATCTACCTCACCAACTACGAGAGCGTTCGCGATGG 40079
|||| ||| ||| | ||||| |||||||| || || ||||| ||
Sbjct 4540 GCATGCGGATCGGCCGAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGG 4481
Query 40080 AAAGCTCGACCCGACACTGTTCACGGCCGTCTCACTCGACGAGGCGAGCGTG-CTGCGCT 40138
||| |||||| ||| | |||| |||| || || ||||| || | |||| ||||||
Sbjct 4480 CAAGATCGACCTGACGCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCG 4422
Query 40139 CGTT---CGGGTCCAAGACGTACCAGTCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACC 40195
|| ||| ||||||| | || |||| | |||||||||||| ||| ||
Sbjct 4421 GTTTTGGCGGCACCAAGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATA 4362
Query 40196 GGTACGTCGCCACCGCCACGCCATCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGG 40255
|| |||||||| |||||||| ||||||||| || | |||||| | ||| || |
Sbjct 4361 AGTTTGTCGCCACGGCCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCG 4302
Query 40256 GTTATCTCGGGGTGATGGACACCGGTGCGGCGCTCACGCGTTGGTTCCAGCGGGAC-TCG 40314
| || | | | ||||| ||| ||| || || | ||| ||||| || ||
Sbjct 4301 CCTTCCTGGAGATCATGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCG 4242
Query 40315 ACCAAGGCGAACAACCTCACCCTGTACCCACACAAGGAGCGTGAGTTCTTCTTGTGGCTC 40374
| ||||| || | || ||| | | || |||||||| || |||| ||||| |
Sbjct 4241 A-GAAGGCCGACGAACTGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTG 4183
Query 40375 AACACCTGGGCGGCGTTCGTGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTAT 40434
|| | |||||| || ||||| || ||| || || ||| || | ||||||
Sbjct 4182 AATAGCTGGGCCGCATTCGTCCAGCGGCCGAGCGATCTGGGTTTTTCCGACGAGGGCTAT 4123
Query 40435 GACCTGCCGCCGCTGGAGGTGCTGTGGCATGAGGT 40469
|||||||| |||||| |||| |||||||||||
Sbjct 4122 GACCTGCCCGAGCTGGACGTGCGCTGGCATGAGGT 4088
Score = 196 bits (216), Expect = 2e-45
Identities = 323/460 (70%), Gaps = 16/460 (3%)
Strand=Plus/Minus
Query 41194 CTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAC 41253
||||||||||||||| | || || || ||| || || || |||||||||| || ||
Sbjct 3375 CTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGAT 3316
Query 41254 TTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACGCCGCAG 41313
|||||||| |||||||| || ||||||| |||||||||||||| || ||||| ||
Sbjct 3315 TTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGAG 3256
Query 41314 CTGCTGCGCATCCTTGCGCCCGGGCGGATCTACGCCTG-----CCATGTCAAGGACCGCA 41368
||||||||| | ||||| |||||| | |||||| ||||| ||||| |||
Sbjct 3255 CTGCTGCGCGT-CTTGCAGCCGGGC----CGGCGCCTGGCGGTGCATGTGAAGGATCGC- 3202
Query 41369 TCTTGTTCGG--AAACGTCACCGGCGCAGGCGTTCCCACCGTCTCCCCGTTCCACGC-CG 41425
|||||| | | | || || ||| | | ||| || |||||||| || ||
Sbjct 3201 -GTTGTTCCGTCGGGCATGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCG 3143
Query 41426 AGGCGATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCA 41485
|| ||| || ||| || ||||||| ||| || |||||| | || | ||||
Sbjct 3142 CTGC-ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCA 3084
Query 41486 CCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAGG 41545
||||||| || || || || || || |||||||||||| | |||||||||||||
Sbjct 3083 CCGATGTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGG 3024
Query 41546 ACGCTACGAAGATGGGCGTCGGCTCGCCGGAATACATTCTGTTGTTCCACAGGCCACAGT 41605
| || | |||||||||||| ||| ||||| | || |||||| || ||| | |
Sbjct 3023 ATGCCAGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGA 2964
Query 41606 CAGACCGGTCCAAGGGCTACGCCGACACCCCGGTCACCAA 41645
| |||||| ||| ||||| ||||| |||||||||||
Sbjct 2963 CCGACCGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 175050290923454
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