Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031262.1 Length=54751 Score E Sequences producing significant alignments: (Bits) Value seq12569 286 1e-72 seq6089 205 3e-48 >seq12569 Length=80069 Score = 286 bits (316), Expect = 1e-72 Identities = 368/507 (73%), Gaps = 18/507 (4%) Strand=Plus/Minus Query 41194 CTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAC 41253 ||||| |||||| || |||||||| | || |||||||| |||||| |||| ||| Sbjct 62692 CTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCGCCGAACTACGCCGAT 62633 Query 41254 TTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACGCCGCAG 41313 ||||| ||||||||||||||||| ||||||||| |||||||||| ||| | ||| || Sbjct 62632 TTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGACTTTCTCGCCCCGGAG 62573 Query 41314 CTGCTGCGCATCCTTGCGCCCGGGCGGATCTACGCCTGCCATGTCAAGGACCGCATCTTG 41373 ||||||||| | || ||||| || ||| | |||| ||| || |||||||| ||| || Sbjct 62572 CTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTGAAGGACCGGATCGTG 62513 Query 41374 TTCGGAAACGTCACCGGCGCAGGCGTTCCCACCGTCTCCCCGTTCCACGCCGA------G 41427 || | |||||| ||| ||| ||||||| ||||||| | ||| | Sbjct 62512 CCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTTCGCGGACGACTGCCGG 62453 Query 41428 GCGATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGC---ATGATCACCGTGGTC 41484 ||| ||||| |||| |||||||| |||||||||| | || || | || Sbjct 62452 GCGTGCTTCC------GCAAGGCCGGCTTCGCCTACCTCGGCGAAAAGACCAACCTG--- 62402 Query 41485 ACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAG 41544 ||||| || || || || ||||||||||| || |||||||||||| |||||||||||| Sbjct 62401 ACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGGAGCGAGCAGTGCAAG 62342 Query 41545 GACGCTACGAAGATGGGCGTCGGCTCGCCGGAATACATTCTGTTGTTCCACAGGCCACAG 41604 |||| || ||||||| ||| ||||||| | | ||| |||||| || ||| | Sbjct 62341 GACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTGTTCCGCAAGCCGCCC 62282 Query 41605 TCAGACCGGTCCAAGGGCTACGCCGACACCCCGGTCACCAAATCCAAGGACGATTACACT 41664 || |||| |||||| || ||||||||| ||||| | || |||||| |||| Sbjct 62281 TCCGACCTGTCCAACGGTTACGCCGACCGGCCGGTGTCGAAGGACAAGGATCGCTACAGC 62222 Query 41665 CGGGCCCGCTGGCAGGTCGACGCGCAC 41691 ||||| ||||||||| ||||||||||| Sbjct 62221 CGGGCGCGCTGGCAGCTCGACGCGCAC 62195 Score = 197 bits (218), Expect = 5e-46 Identities = 451/666 (68%), Gaps = 21/666 (3%) Strand=Plus/Minus Query 39802 CACCAGCGCGATCTGGTGCGTTGGGCGGTC-GCCGGGGGTAGGCGCGCGATCTTCGCGGC 39860 || ||||| | |||| | ||||||||| | | || ||| ||| | ||||| || Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGC-CGCCCTGTTCGCCGC 64014 Query 39861 GTTCGGCCTGGGCAAGACGGTGATGCAGCTGGAGATCGTGCG---CCTGTCGCTAGCCAA 39917 ||||||||||| || | || | ||| ||||||| | ||| | || ||| || | Sbjct 64013 CTTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTGCGCGGATCATG-CGCGAG---A 63958 Query 39918 GCATGGCGGTGGGCGAGGCTTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCA 39977 | ||| ||| ||| ||||||| || ||||| ||||||||| |||||| | Sbjct 63957 TCTC--CGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCG 63900 Query 39978 CGACGCCAACATGCTGGGCATCGAAACCCGGTTTGTTCGCCGCACAGAAGAAGTCGGCGG 40037 |||||| |||||||||| | |||||| |||| || | || || | | || Sbjct 63899 GGACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGA 63840 Query 40038 ---CGACGGTATCTACCTCACCAACTACGAGAGCGTTCGCGATGGAAAGCTCGACCCGAC 40094 || || ||||||| ||||||||||||| ||||| || || ||||||||||| | Sbjct 63839 TCCCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCC-AT 63781 Query 40095 ACTG-TTCACGGCCGTCTCACTCGACGAGGCGAGCGTGCTGC---GCTCGTTCGGGTCCA 40150 ||| ||| ||| || || || |||||||| ||||| |||| ||| ||| |||| Sbjct 63780 CCTGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCA 63721 Query 40151 AGACGTACCAGTCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGCCACCG 40210 |||| | | |||| | ||||||||| ||| |||| || | ||||||||| | Sbjct 63720 AGACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGG 63661 Query 40211 CCACGCCATCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGTTATCTCGGGGTGA 40270 ||||||| ||||| ||| | || |||||| || ||| ||| | || || |||| Sbjct 63660 CCACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGA 63601 Query 40271 TGGACACCGGTGCGGCGCTCACGCGTTGGTTCCAGCGGGAC-TCGACCAAGGCGAACAAC 40329 |||| ||| ||| || || | |||| ||| ||| ||| || | || || | Sbjct 63600 TGGATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCG-ACGCC 63542 Query 40330 CTCACCCTGTACCCACACAAGGAGCGTGAGTTCTTCTTGTGGCTCAACACCTGGGCGGCG 40389 ||||||||| |||| ||||| ||||| ||||||| ||||| | | ||||| | Sbjct 63541 CTCACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGGTGCGCAAGCTGGGGTCTG 63482 Query 40390 TTCGTGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTATGACCTGCCGCCGCTG 40449 ||||| || ||| || ||||| | || | |||||| ||||||||||| ||| Sbjct 63481 TTCGTCCAGCGGCCGAGCGATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCCCCTG 63422 Query 40450 GAGGTG 40455 ||||| Sbjct 63421 CAGGTG 63416 Score = 93.3 bits (102), Expect = 1e-14 Identities = 127/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 42967 TGCCCCTTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGAATCCTGGCGAG 43026 |||||| ||| ||||| ||||| ||||||||||||| | | || | || ||||| Sbjct 61909 TGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCGAGCCGGGCGAC 61850 Query 43027 TTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCGCTGAAACTCGGC 43086 |||||||||| ||||||||||| ||| |||||||| | || || | || | ||| Sbjct 61849 GTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCATCAAGCACGGG 61790 Query 43087 CGGCGTGGTCGTGGTG-TCGAGCTGAATCCGGGCTACTACTTCGATGCTGTCAAG 43140 | |||| | | || | ||||||||| |||| ||||| |||| | ||| ||| Sbjct 61789 C-GCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTGTGAAG 61736 >seq6089 Length=13452 Score = 205 bits (226), Expect = 3e-48 Identities = 471/695 (68%), Gaps = 36/695 (5%) Strand=Plus/Minus Query 39802 CACCAGCGCGATCTGGTGCGTTGGGCGGTCGCCGGGGGTAGGCGCGCGATCTTCGCGGCG 39861 |||||| ||| ||||| || ||||| |||| || || | |||||||||||||| ||| Sbjct 4773 CACCAGGCCGAGCTGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCG 4714 Query 39862 TTCGGCCTGGGCAAGACGGTGATGCAGCTGGAGATCGTGCGCCTG--TCGCTAGCCAAGC 39919 ||||||||||||||| |||| ||||||||||||||| |||||| | | || ||| ||| Sbjct 4713 TTCGGCCTGGGCAAGTCGGTCATGCAGCTGGAGATCATGCGCCAGCTTGGC--GCCCAGC 4656 Query 39920 ATGGCGGTGGGCGAGGCTTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCACG 39979 ||||| ||| || ||||||| |||||||| ||||| |||||| ||| | || Sbjct 4655 TGGGCGGCCGGC-AG--CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCG 4599 Query 39980 ACGCCAACATGCTGGGCATCGAAACCCGGTTT--GTTCGCCGCACAG--AAGAAGTCG-- 40033 |||| ||||||||| | | | ||| ||| | ||| | || | ||| ||| Sbjct 4598 ACGCGCTGATGCTGGGCCTGG--ATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCT 4541 Query 40034 ----GCGG------CGA-CGG---TATCTACCTCACCAACTACGAGAGCGTTCGCGATGG 40079 |||| ||| ||| | ||||| |||||||| || || ||||| || Sbjct 4540 GCATGCGGATCGGCCGAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGG 4481 Query 40080 AAAGCTCGACCCGACACTGTTCACGGCCGTCTCACTCGACGAGGCGAGCGTG-CTGCGCT 40138 ||| |||||| ||| | |||| |||| || || ||||| || | |||| |||||| Sbjct 4480 CAAGATCGACCTGACGCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCG 4422 Query 40139 CGTT---CGGGTCCAAGACGTACCAGTCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACC 40195 || ||| ||||||| | || |||| | |||||||||||| ||| || Sbjct 4421 GTTTTGGCGGCACCAAGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATA 4362 Query 40196 GGTACGTCGCCACCGCCACGCCATCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGG 40255 || |||||||| |||||||| ||||||||| || | |||||| | ||| || | Sbjct 4361 AGTTTGTCGCCACGGCCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCG 4302 Query 40256 GTTATCTCGGGGTGATGGACACCGGTGCGGCGCTCACGCGTTGGTTCCAGCGGGAC-TCG 40314 | || | | | ||||| ||| ||| || || | ||| ||||| || || Sbjct 4301 CCTTCCTGGAGATCATGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCG 4242 Query 40315 ACCAAGGCGAACAACCTCACCCTGTACCCACACAAGGAGCGTGAGTTCTTCTTGTGGCTC 40374 | ||||| || | || ||| | | || |||||||| || |||| ||||| | Sbjct 4241 A-GAAGGCCGACGAACTGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTG 4183 Query 40375 AACACCTGGGCGGCGTTCGTGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTAT 40434 || | |||||| || ||||| || ||| || || ||| || | |||||| Sbjct 4182 AATAGCTGGGCCGCATTCGTCCAGCGGCCGAGCGATCTGGGTTTTTCCGACGAGGGCTAT 4123 Query 40435 GACCTGCCGCCGCTGGAGGTGCTGTGGCATGAGGT 40469 |||||||| |||||| |||| ||||||||||| Sbjct 4122 GACCTGCCCGAGCTGGACGTGCGCTGGCATGAGGT 4088 Score = 196 bits (216), Expect = 2e-45 Identities = 323/460 (70%), Gaps = 16/460 (3%) Strand=Plus/Minus Query 41194 CTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAC 41253 ||||||||||||||| | || || || ||| || || || |||||||||| || || Sbjct 3375 CTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGAT 3316 Query 41254 TTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACGCCGCAG 41313 |||||||| |||||||| || ||||||| |||||||||||||| || ||||| || Sbjct 3315 TTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGAG 3256 Query 41314 CTGCTGCGCATCCTTGCGCCCGGGCGGATCTACGCCTG-----CCATGTCAAGGACCGCA 41368 ||||||||| | ||||| |||||| | |||||| ||||| ||||| ||| Sbjct 3255 CTGCTGCGCGT-CTTGCAGCCGGGC----CGGCGCCTGGCGGTGCATGTGAAGGATCGC- 3202 Query 41369 TCTTGTTCGG--AAACGTCACCGGCGCAGGCGTTCCCACCGTCTCCCCGTTCCACGC-CG 41425 |||||| | | | || || ||| | | ||| || |||||||| || || Sbjct 3201 -GTTGTTCCGTCGGGCATGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCG 3143 Query 41426 AGGCGATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCA 41485 || ||| || ||| || ||||||| ||| || |||||| | || | |||| Sbjct 3142 CTGC-ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCA 3084 Query 41486 CCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAGG 41545 ||||||| || || || || || || |||||||||||| | ||||||||||||| Sbjct 3083 CCGATGTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGG 3024 Query 41546 ACGCTACGAAGATGGGCGTCGGCTCGCCGGAATACATTCTGTTGTTCCACAGGCCACAGT 41605 | || | |||||||||||| ||| ||||| | || |||||| || ||| | | Sbjct 3023 ATGCCAGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGA 2964 Query 41606 CAGACCGGTCCAAGGGCTACGCCGACACCCCGGTCACCAA 41645 | |||||| ||| ||||| ||||| ||||||||||| Sbjct 2963 CCGACCGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175050290923454