Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031266.1
Length=44872
Score E
Sequences producing significant alignments: (Bits) Value
seq12569 246 9e-61
seq6089 223 1e-53
>seq12569
Length=80069
Score = 246 bits (272), Expect = 9e-61
Identities = 331/458 (72%), Gaps = 12/458 (3%)
Strand=Plus/Minus
Query 39333 GTGGATCTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTAC 39392
|||| ||||| |||||| || |||||||| | || |||||||| |||||| ||||
Sbjct 62698 GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCGCCGAACTAC 62639
Query 39393 AACGATTTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACA 39452
||||||||| ||||||||||||||||| ||||||||| |||||||||| ||| |
Sbjct 62638 GCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGACTTTCTCGCC 62579
Query 39453 CCGCAGCTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGC 39512
||| ||||||||||| | |||||||||||||| | |||| |||||| ||||||||
Sbjct 62578 CCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTGAAGGACCGG 62519
Query 39513 ATCTTGTTCGGCAACGTCACCGGCGCCGGCGTGCCCACCGTGTCCCCGTTTCACGCCGAG 39572
||| || || | |||||| |||| | | ||||| | |||||| ||| ||
Sbjct 62518 ATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTT---CGCGGA- 62463
Query 39573 GCGATCTTCC------ACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTC 39626
||| || || | |||||| |||||||| |||||||||| | ||| |
Sbjct 62462 -CGA-CTGCCGGGCGTGCTTCCGCAAGGCCGGCTTCGCCTACCTCGGCGAAAAGACCAAC 62405
Query 39627 GTAACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGC 39686
| ||||| || || || || ||||||||||| || |||||||||||| ||||||||||
Sbjct 62404 CTGACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGGAGCGAGCAGTGC 62345
Query 39687 AAAGACGCCACCAAGATGGGCGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAACCG 39746
|| |||| | ||||||| ||| |||||| | | |||||||||| ||| |||
Sbjct 62344 AAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTGTTCCGCAAGCCG 62285
Query 39747 CAAACAGACAGGTCCCGTGGGTATGCCGACGTACCGGT 39784
| | ||| |||| || || |||||| |||||
Sbjct 62284 CCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGT 62247
Score = 201 bits (222), Expect = 3e-47
Identities = 452/666 (68%), Gaps = 21/666 (3%)
Strand=Plus/Minus
Query 37947 CACCAGCGCGATCTGGTGCGTTGGGCGGTC-GCCGGGGGTAGGCGCGCGATCTTCGCGGC 38005
|| ||||| | |||| | ||||||||| | | || ||| ||| | ||||| ||
Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGC-CGCCCTGTTCGCCGC 64014
Query 38006 GTTCGGCCTGGGCAAGACGGTGATGCAGCTGGAGATCGTGCG---CCTGTCGCTAGCCAA 38062
||||||||||| || | || | ||| ||||||| | ||| | || ||| || |
Sbjct 64013 CTTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTGCGCGGATCATG-CGCGAG---A 63958
Query 38063 GCATGGCGGTGGGCGAGGCTTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCA 38122
| ||| ||| ||| ||||||| || ||||| ||||||||| |||||| |
Sbjct 63957 TCTC--CGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCG 63900
Query 38123 CGACGCCAACATGCTGGGCATCGAAACCCGGTTTGTTCGCCGCACAGAAGAAGTCGGCGG 38182
|||||| |||||||||| | |||||| |||| || | || || | | ||
Sbjct 63899 GGACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGA 63840
Query 38183 ---CGACGGTATCTACCTCACCAACTACGAGAGCGTTCGCGATGGAAAGCTCGACCCGAC 38239
|| || ||||||| ||||||||||||| ||||| || || ||||||||||| |
Sbjct 63839 TCCCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCCATC 63780
Query 38240 ACTGTT-CACGGCCGTCTCACTCGACGAGGCGAGCGTGCTGCGCTCGTTCGGG---TCCA 38295
||||| | ||| || || || |||||||| ||||| ||||| ||||| ||||
Sbjct 63779 -CTGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCA 63721
Query 38296 AGACGTACCAGTCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGCCACCG 38355
|||| | | |||| | ||||||||| ||| |||| || | ||||||||| |
Sbjct 63720 AGACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGG 63661
Query 38356 CCACACCCTCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGCTATCTCGGGGTGA 38415
|||| || ||||| ||| | || |||||| || ||| ||| | || || ||||
Sbjct 63660 CCACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGA 63601
Query 38416 TGGACACCGGTGCGGCGCTCACGCGTTGGTTCCAGCGGGACTCCACGAAGGCGAACAACC 38475
|||| ||| ||| || || | |||| ||| ||| | | | || || ||
Sbjct 63600 TGGATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCGACGCCC 63541
Query 38476 TCACCCTCTACCCGCATAAAGAACACGAGTTCTGGCTGTGGCTGAACACG-TGGGCGGCG 38534
||||||| ||||||| ||||| | |||||||||||||||| || || | |||| |
Sbjct 63540 TCACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGG-TGCGCAAGCTGGGGTCTG 63482
Query 38535 TTCGTGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTACGACCTGCCGCCGCTG 38594
||||| || ||| || ||||| | || | |||||||||||||||||| |||
Sbjct 63481 TTCGTCCAGCGGCCGAGCGATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCCCCTG 63422
Query 38595 GAGGTG 38600
|||||
Sbjct 63421 CAGGTG 63416
Score = 102 bits (112), Expect = 2e-17
Identities = 166/237 (70%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 40198 AAATGCACGTGTGCCCCCTGCAGTTCGACATCGTTGATCGGCTGATCACTCGTTTCTCGA 40257
||| |||| |||||||||||| ||||| ||||| || |||||||||| | | ||
Sbjct 61920 AAAAGCACCTGTGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCG 61861
Query 40258 ATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTC 40317
| || ||||| |||||||||| ||||||||||| ||| |||||||| | || ||
Sbjct 61860 AGCCGGGCGACGTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCA 61801
Query 40318 TGAAACTTGGTCGCCGCGGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGATGCTG 40377
| || | || ||| |||| | | ||||||||| || | ||||| |||| | ||
Sbjct 61800 TCAAGCACGGGCGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTG 61741
Query 40378 TCAAGTATTTGCAAGCCGAGGAGCGCCGG--CGCGACATGCCAAGCCTGTTCGACCT 40432
| ||| | | | ||| || |||| | ||||| ||| | ||| ||||||||
Sbjct 61740 TGAAGCACGTCGAGGCCATGGCGCGCGAGATGGCGAC--GCCGACCCTCTTCGACCT 61686
>seq6089
Length=13452
Score = 223 bits (246), Expect = 1e-53
Identities = 473/694 (68%), Gaps = 34/694 (5%)
Strand=Plus/Minus
Query 37947 CACCAGCGCGATCTGGTGCGTTGGGCGGTCGCCGGGGGTAGGCGCGCGATCTTCGCGGCG 38006
|||||| ||| ||||| || ||||| |||| || || | |||||||||||||| |||
Sbjct 4773 CACCAGGCCGAGCTGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCG 4714
Query 38007 TTCGGCCTGGGCAAGACGGTGATGCAGCTGGAGATCGTGCGCCTG--TCGCTAGCCAAGC 38064
||||||||||||||| |||| ||||||||||||||| |||||| | | || ||| |||
Sbjct 4713 TTCGGCCTGGGCAAGTCGGTCATGCAGCTGGAGATCATGCGCCAGCTTGGC--GCCCAGC 4656
Query 38065 ATGGCGGTGGGCGAGGCTTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCACG 38124
||||| ||| || ||||||| |||||||| ||||| |||||| ||| | ||
Sbjct 4655 TGGGCGGCCGGC-AG--CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCG 4599
Query 38125 ACGCCAACATGCTGGGCATCGAAACCCGGTTT--GTTCGCCGCACAG--AAGAAGTCG-- 38178
|||| ||||||||| | | | ||| ||| | ||| | || | ||| |||
Sbjct 4598 ACGCGCTGATGCTGGGCCTGG--ATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCT 4541
Query 38179 ----GCGG------CGA-CGG---TATCTACCTCACCAACTACGAGAGCGTTCGCGATGG 38224
|||| ||| ||| | ||||| |||||||| || || ||||| ||
Sbjct 4540 GCATGCGGATCGGCCGAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGG 4481
Query 38225 AAAGCTCGACCCGACACTGTTCACGGCCGTCTCACTCGACGAGGCGAGCGTG-CTGCGCT 38283
||| |||||| ||| | |||| |||| || || ||||| || | |||| ||||||
Sbjct 4480 CAAGATCGACCTGACGCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCG 4422
Query 38284 CGTT---CGGGTCCAAGACGTACCAGTCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACC 38340
|| ||| ||||||| | || |||| | |||||||||||| ||| ||
Sbjct 4421 GTTTTGGCGGCACCAAGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATA 4362
Query 38341 GGTACGTCGCCACCGCCACACCCTCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGG 38400
|| |||||||| ||||| || ||||||||| || | |||||| | ||| || |
Sbjct 4361 AGTTTGTCGCCACGGCCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCG 4302
Query 38401 GCTATCTCGGGGTGATGGACACCGGTGCGGCGCTCACGCGTTGGTTCCAGCGGGACTCCA 38460
|| || | | | ||||| ||| ||| || || | ||| ||||| || |
Sbjct 4301 CCTTCCTGGAGATCATGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCG 4242
Query 38461 CGAAGGCGAACAACCTCACCCTCTACCCGCATAAAGAACACGAGTTCTGGCTGTGGCTGA 38520
|||||| || | || ||| || | ||||| || ||| | || |||||||||||| |||
Sbjct 4241 AGAAGGCCGACGAACTGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGA 4182
Query 38521 ACACGTGGGCGGCGTTCGTGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTACG 38580
| | ||||| || ||||| || ||| || || ||| || | ||||| |
Sbjct 4181 ATAGCTGGGCCGCATTCGTCCAGCGGCCGAGCGATCTGGGTTTTTCCGACGAGGGCTATG 4122
Query 38581 ACCTGCCGCCGCTGGAGGTGTTGTGGCATGAGGT 38614
||||||| |||||| ||| |||||||||||
Sbjct 4121 ACCTGCCCGAGCTGGACGTGCGCTGGCATGAGGT 4088
Score = 190 bits (210), Expect = 6e-44
Identities = 320/459 (70%), Gaps = 12/459 (3%)
Strand=Plus/Minus
Query 39339 CTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAT 39398
||||||||||||||| | || || || ||| || || || |||||||||| || |||
Sbjct 3375 CTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGAT 3316
Query 39399 TTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCAG 39458
|||||||| |||||||| || ||||||| |||||||||||||| || || || ||
Sbjct 3315 TTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGAG 3256
Query 39459 CTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTG 39518
||||||||| || | ||||||||| | || || || ||||| ||| | ||
Sbjct 3255 CTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGCGT--TG 3198
Query 39519 TTC-----GGCAACGTCACCGGCGCCGGCGTGCCCACCGTGTCCCCGTTTCACGC-CGAG 39572
||| |||| | || || ||| | | ||| | ||||| || || ||
Sbjct 3197 TTCCGTCGGGCA---TGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGCT 3141
Query 39573 GCGATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTCGTAACC 39632
|| ||| || ||| || ||||||| ||| || |||||| | || |||| |||
Sbjct 3140 GC-ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCACC 3082
Query 39633 GATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGAC 39692
||||| || || || || || || |||||||||||| ||||||||||||| ||
Sbjct 3081 GATGTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGAT 3022
Query 39693 GCCACCAAGATGGGCGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAACCGCAAACA 39752
|||| | |||||||||||| || ||||| | || ||||||| ||| |||| ||
Sbjct 3021 GCCAGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGACC 2962
Query 39753 GACAGGTCCCGTGGGTATGCCGACGTACCGGTCATCAAG 39791
||| || | || |||||||| || ||||||| ||||
Sbjct 2961 GACCGGAGCAACGGCTATGCCGATGTGCCGGTCACCAAG 2923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143443144102172
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