Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031266.1 Length=44872 Score E Sequences producing significant alignments: (Bits) Value seq12569 246 9e-61 seq6089 223 1e-53 >seq12569 Length=80069 Score = 246 bits (272), Expect = 9e-61 Identities = 331/458 (72%), Gaps = 12/458 (3%) Strand=Plus/Minus Query 39333 GTGGATCTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTAC 39392 |||| ||||| |||||| || |||||||| | || |||||||| |||||| |||| Sbjct 62698 GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCGCCGAACTAC 62639 Query 39393 AACGATTTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACA 39452 ||||||||| ||||||||||||||||| ||||||||| |||||||||| ||| | Sbjct 62638 GCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGACTTTCTCGCC 62579 Query 39453 CCGCAGCTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGC 39512 ||| ||||||||||| | |||||||||||||| | |||| |||||| |||||||| Sbjct 62578 CCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTGAAGGACCGG 62519 Query 39513 ATCTTGTTCGGCAACGTCACCGGCGCCGGCGTGCCCACCGTGTCCCCGTTTCACGCCGAG 39572 ||| || || | |||||| |||| | | ||||| | |||||| ||| || Sbjct 62518 ATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTT---CGCGGA- 62463 Query 39573 GCGATCTTCC------ACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTC 39626 ||| || || | |||||| |||||||| |||||||||| | ||| | Sbjct 62462 -CGA-CTGCCGGGCGTGCTTCCGCAAGGCCGGCTTCGCCTACCTCGGCGAAAAGACCAAC 62405 Query 39627 GTAACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGC 39686 | ||||| || || || || ||||||||||| || |||||||||||| |||||||||| Sbjct 62404 CTGACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGGAGCGAGCAGTGC 62345 Query 39687 AAAGACGCCACCAAGATGGGCGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAACCG 39746 || |||| | ||||||| ||| |||||| | | |||||||||| ||| ||| Sbjct 62344 AAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTGTTCCGCAAGCCG 62285 Query 39747 CAAACAGACAGGTCCCGTGGGTATGCCGACGTACCGGT 39784 | | ||| |||| || || |||||| ||||| Sbjct 62284 CCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGT 62247 Score = 201 bits (222), Expect = 3e-47 Identities = 452/666 (68%), Gaps = 21/666 (3%) Strand=Plus/Minus Query 37947 CACCAGCGCGATCTGGTGCGTTGGGCGGTC-GCCGGGGGTAGGCGCGCGATCTTCGCGGC 38005 || ||||| | |||| | ||||||||| | | || ||| ||| | ||||| || Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGC-CGCCCTGTTCGCCGC 64014 Query 38006 GTTCGGCCTGGGCAAGACGGTGATGCAGCTGGAGATCGTGCG---CCTGTCGCTAGCCAA 38062 ||||||||||| || | || | ||| ||||||| | ||| | || ||| || | Sbjct 64013 CTTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTGCGCGGATCATG-CGCGAG---A 63958 Query 38063 GCATGGCGGTGGGCGAGGCTTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCA 38122 | ||| ||| ||| ||||||| || ||||| ||||||||| |||||| | Sbjct 63957 TCTC--CGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCG 63900 Query 38123 CGACGCCAACATGCTGGGCATCGAAACCCGGTTTGTTCGCCGCACAGAAGAAGTCGGCGG 38182 |||||| |||||||||| | |||||| |||| || | || || | | || Sbjct 63899 GGACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGA 63840 Query 38183 ---CGACGGTATCTACCTCACCAACTACGAGAGCGTTCGCGATGGAAAGCTCGACCCGAC 38239 || || ||||||| ||||||||||||| ||||| || || ||||||||||| | Sbjct 63839 TCCCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCCATC 63780 Query 38240 ACTGTT-CACGGCCGTCTCACTCGACGAGGCGAGCGTGCTGCGCTCGTTCGGG---TCCA 38295 ||||| | ||| || || || |||||||| ||||| ||||| ||||| |||| Sbjct 63779 -CTGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCA 63721 Query 38296 AGACGTACCAGTCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGCCACCG 38355 |||| | | |||| | ||||||||| ||| |||| || | ||||||||| | Sbjct 63720 AGACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGG 63661 Query 38356 CCACACCCTCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGCTATCTCGGGGTGA 38415 |||| || ||||| ||| | || |||||| || ||| ||| | || || |||| Sbjct 63660 CCACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGA 63601 Query 38416 TGGACACCGGTGCGGCGCTCACGCGTTGGTTCCAGCGGGACTCCACGAAGGCGAACAACC 38475 |||| ||| ||| || || | |||| ||| ||| | | | || || || Sbjct 63600 TGGATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCGACGCCC 63541 Query 38476 TCACCCTCTACCCGCATAAAGAACACGAGTTCTGGCTGTGGCTGAACACG-TGGGCGGCG 38534 ||||||| ||||||| ||||| | |||||||||||||||| || || | |||| | Sbjct 63540 TCACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGG-TGCGCAAGCTGGGGTCTG 63482 Query 38535 TTCGTGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTACGACCTGCCGCCGCTG 38594 ||||| || ||| || ||||| | || | |||||||||||||||||| ||| Sbjct 63481 TTCGTCCAGCGGCCGAGCGATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCCCCTG 63422 Query 38595 GAGGTG 38600 ||||| Sbjct 63421 CAGGTG 63416 Score = 102 bits (112), Expect = 2e-17 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 40198 AAATGCACGTGTGCCCCCTGCAGTTCGACATCGTTGATCGGCTGATCACTCGTTTCTCGA 40257 ||| |||| |||||||||||| ||||| ||||| || |||||||||| | | || Sbjct 61920 AAAAGCACCTGTGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCG 61861 Query 40258 ATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTC 40317 | || ||||| |||||||||| ||||||||||| ||| |||||||| | || || Sbjct 61860 AGCCGGGCGACGTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCA 61801 Query 40318 TGAAACTTGGTCGCCGCGGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGATGCTG 40377 | || | || ||| |||| | | ||||||||| || | ||||| |||| | || Sbjct 61800 TCAAGCACGGGCGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTG 61741 Query 40378 TCAAGTATTTGCAAGCCGAGGAGCGCCGG--CGCGACATGCCAAGCCTGTTCGACCT 40432 | ||| | | | ||| || |||| | ||||| ||| | ||| |||||||| Sbjct 61740 TGAAGCACGTCGAGGCCATGGCGCGCGAGATGGCGAC--GCCGACCCTCTTCGACCT 61686 >seq6089 Length=13452 Score = 223 bits (246), Expect = 1e-53 Identities = 473/694 (68%), Gaps = 34/694 (5%) Strand=Plus/Minus Query 37947 CACCAGCGCGATCTGGTGCGTTGGGCGGTCGCCGGGGGTAGGCGCGCGATCTTCGCGGCG 38006 |||||| ||| ||||| || ||||| |||| || || | |||||||||||||| ||| Sbjct 4773 CACCAGGCCGAGCTGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCG 4714 Query 38007 TTCGGCCTGGGCAAGACGGTGATGCAGCTGGAGATCGTGCGCCTG--TCGCTAGCCAAGC 38064 ||||||||||||||| |||| ||||||||||||||| |||||| | | || ||| ||| Sbjct 4713 TTCGGCCTGGGCAAGTCGGTCATGCAGCTGGAGATCATGCGCCAGCTTGGC--GCCCAGC 4656 Query 38065 ATGGCGGTGGGCGAGGCTTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCACG 38124 ||||| ||| || ||||||| |||||||| ||||| |||||| ||| | || Sbjct 4655 TGGGCGGCCGGC-AG--CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCG 4599 Query 38125 ACGCCAACATGCTGGGCATCGAAACCCGGTTT--GTTCGCCGCACAG--AAGAAGTCG-- 38178 |||| ||||||||| | | | ||| ||| | ||| | || | ||| ||| Sbjct 4598 ACGCGCTGATGCTGGGCCTGG--ATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCT 4541 Query 38179 ----GCGG------CGA-CGG---TATCTACCTCACCAACTACGAGAGCGTTCGCGATGG 38224 |||| ||| ||| | ||||| |||||||| || || ||||| || Sbjct 4540 GCATGCGGATCGGCCGAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGG 4481 Query 38225 AAAGCTCGACCCGACACTGTTCACGGCCGTCTCACTCGACGAGGCGAGCGTG-CTGCGCT 38283 ||| |||||| ||| | |||| |||| || || ||||| || | |||| |||||| Sbjct 4480 CAAGATCGACCTGACGCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCG 4422 Query 38284 CGTT---CGGGTCCAAGACGTACCAGTCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACC 38340 || ||| ||||||| | || |||| | |||||||||||| ||| || Sbjct 4421 GTTTTGGCGGCACCAAGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATA 4362 Query 38341 GGTACGTCGCCACCGCCACACCCTCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGG 38400 || |||||||| ||||| || ||||||||| || | |||||| | ||| || | Sbjct 4361 AGTTTGTCGCCACGGCCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCG 4302 Query 38401 GCTATCTCGGGGTGATGGACACCGGTGCGGCGCTCACGCGTTGGTTCCAGCGGGACTCCA 38460 || || | | | ||||| ||| ||| || || | ||| ||||| || | Sbjct 4301 CCTTCCTGGAGATCATGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCG 4242 Query 38461 CGAAGGCGAACAACCTCACCCTCTACCCGCATAAAGAACACGAGTTCTGGCTGTGGCTGA 38520 |||||| || | || ||| || | ||||| || ||| | || |||||||||||| ||| Sbjct 4241 AGAAGGCCGACGAACTGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGA 4182 Query 38521 ACACGTGGGCGGCGTTCGTGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTACG 38580 | | ||||| || ||||| || ||| || || ||| || | ||||| | Sbjct 4181 ATAGCTGGGCCGCATTCGTCCAGCGGCCGAGCGATCTGGGTTTTTCCGACGAGGGCTATG 4122 Query 38581 ACCTGCCGCCGCTGGAGGTGTTGTGGCATGAGGT 38614 ||||||| |||||| ||| ||||||||||| Sbjct 4121 ACCTGCCCGAGCTGGACGTGCGCTGGCATGAGGT 4088 Score = 190 bits (210), Expect = 6e-44 Identities = 320/459 (70%), Gaps = 12/459 (3%) Strand=Plus/Minus Query 39339 CTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAT 39398 ||||||||||||||| | || || || ||| || || || |||||||||| || ||| Sbjct 3375 CTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGAT 3316 Query 39399 TTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCAG 39458 |||||||| |||||||| || ||||||| |||||||||||||| || || || || Sbjct 3315 TTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGAG 3256 Query 39459 CTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTG 39518 ||||||||| || | ||||||||| | || || || ||||| ||| | || Sbjct 3255 CTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGCGT--TG 3198 Query 39519 TTC-----GGCAACGTCACCGGCGCCGGCGTGCCCACCGTGTCCCCGTTTCACGC-CGAG 39572 ||| |||| | || || ||| | | ||| | ||||| || || || Sbjct 3197 TTCCGTCGGGCA---TGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGCT 3141 Query 39573 GCGATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTCGTAACC 39632 || ||| || ||| || ||||||| ||| || |||||| | || |||| ||| Sbjct 3140 GC-ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCACC 3082 Query 39633 GATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGAC 39692 ||||| || || || || || || |||||||||||| ||||||||||||| || Sbjct 3081 GATGTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGAT 3022 Query 39693 GCCACCAAGATGGGCGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAACCGCAAACA 39752 |||| | |||||||||||| || ||||| | || ||||||| ||| |||| || Sbjct 3021 GCCAGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGACC 2962 Query 39753 GACAGGTCCCGTGGGTATGCCGACGTACCGGTCATCAAG 39791 ||| || | || |||||||| || ||||||| |||| Sbjct 2961 GACCGGAGCAACGGCTATGCCGATGTGCCGGTCACCAAG 2923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143443144102172