Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031274.1 Length=50509 Score E Sequences producing significant alignments: (Bits) Value seq9673 91.5 5e-14 seq9910 82.4 2e-11 >seq9673 Length=4878 Score = 91.5 bits (100), Expect = 5e-14 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 45664 TGGCGTTCCGTACAGGATTCGAACCTGTAACCCACAGCTTAGAAGGCTGTAGCTCTATCC 45723 ||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 562 TGGCGATCCCGACAGGATTCGAACCTGTGACCCACAGCTTAGAAGGCTGTTGCTCTATCC 503 Query 45724 TATTGAGCTA 45733 ||||||| Sbjct 502 AGCTGAGCTA 493 >seq9910 Length=308115 Score = 82.4 bits (90), Expect = 2e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 45664 TGGCGTTCCGTACAGGATTCGAACCTGTAACCCACAGCTTAGAAGGCTGTAGCTCTATCC 45723 |||| | || |||||| ||||||||||||||| ||||||||||||||| ||||||||| Sbjct 244672 TGGCCTGCCCGACAGGAATCGAACCTGTAACCCCCAGCTTAGAAGGCTGGTGCTCTATCC 244731 Query 45724 TATTGAGCTA 45733 |||||||| Sbjct 244732 GGTTGAGCTA 244741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161478318374018