Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031280.1
Length=104906
Score E
Sequences producing significant alignments: (Bits) Value
seq11739 170 1e-37
seq551 93.3 3e-14
>seq11739
Length=237542
Score = 170 bits (188), Expect = 1e-37
Identities = 217/299 (73%), Gaps = 0/299 (0%)
Strand=Plus/Minus
Query 70267 TGAGGGTATTGATCAGATCGAGTGGGTAATTAATGAGATTAAAACTAATCCAAATAGCCG 70326
||| ||| |||| || ||| ||| | | ||||| || || || |||||||| ||
Sbjct 9113 TGATGGTTTTGACCAAATCAGTTGGTTGGTCAATGAAATCAAGACCAATCCAAACTCACG 9054
Query 70327 TCGTATGATTGTCACGGGGTGGAACCCTCATGAGATTGAAGATGTAGACCTTCCACCATG 70386
|||| ||||||| | || |||||||| |||| | | || | | | || |||||
Sbjct 9053 TCGTTTGATTGTGTCTGGCTGGAACCCAAATGAAGCAGGTAAAGTTGCCTTACCGCCATG 8994
Query 70387 TCATACACTATTCCAATTCTTTGTGGAAGATGGTAAGCTTTCTTGCCAGCTATATCAACG 70446
|| || |||||||||| ||||| | ||||| ||| | |||||||| || ||||||||
Sbjct 8993 CCACACTTTATTCCAATTTTTTGTTCAGGATGGAAAGTTGTCTTGCCAACTTTATCAACG 8934
Query 70447 TAGTGCTGACATTTTACTTGGTGTGCCATTCAATATTGCATCATATGCCTTACTTACACA 70506
|||||| || |||| | || |||||||| |||||||| ||||| |||| || ||
Sbjct 8933 TAGTGCAGATGTTTTCTTAGGGGTGCCATTTAATATTGCCAGCTATGCTCTACTGACTCA 8874
Query 70507 TCTTATTGCTGCTGAGTGTGGGTTAGGTGTTGGTGAGTTTGTTTGGACTGGTGGTGATA 70565
| | ||||| | ||||| ||||| || ||||| ||||| |||||||| |||||||
Sbjct 8873 TATGGTTGCTCAAGTTTGTGGTTTAGGCGTAGGTGATTTTGTCTGGACTGGCGGTGATA 8815
>seq551
Length=68878
Score = 93.3 bits (102), Expect = 3e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 7852 CGCCATTAGCTCAGATGGATAGAGCATCTGCCTTCTAAGTAGATGGTCACGGGTTCGAAT 7911
|||| |||||||| ||||||||||||| |||||||||| ||||||||| |||||||||
Sbjct 2910 CGCCTGTAGCTCAGTTGGATAGAGCATCCGCCTTCTAAGCGGATGGTCACAGGTTCGAAT 2851
Query 7912 CCTGTATGGCGTACCA 7927
||||| |||| ||||
Sbjct 2850 CCTGTCAGGCGCACCA 2835
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 335512811506033
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |