Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031280.1 Length=104906 Score E Sequences producing significant alignments: (Bits) Value seq11739 170 1e-37 seq551 93.3 3e-14 >seq11739 Length=237542 Score = 170 bits (188), Expect = 1e-37 Identities = 217/299 (73%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 70267 TGAGGGTATTGATCAGATCGAGTGGGTAATTAATGAGATTAAAACTAATCCAAATAGCCG 70326 ||| ||| |||| || ||| ||| | | ||||| || || || |||||||| || Sbjct 9113 TGATGGTTTTGACCAAATCAGTTGGTTGGTCAATGAAATCAAGACCAATCCAAACTCACG 9054 Query 70327 TCGTATGATTGTCACGGGGTGGAACCCTCATGAGATTGAAGATGTAGACCTTCCACCATG 70386 |||| ||||||| | || |||||||| |||| | | || | | | || ||||| Sbjct 9053 TCGTTTGATTGTGTCTGGCTGGAACCCAAATGAAGCAGGTAAAGTTGCCTTACCGCCATG 8994 Query 70387 TCATACACTATTCCAATTCTTTGTGGAAGATGGTAAGCTTTCTTGCCAGCTATATCAACG 70446 || || |||||||||| ||||| | ||||| ||| | |||||||| || |||||||| Sbjct 8993 CCACACTTTATTCCAATTTTTTGTTCAGGATGGAAAGTTGTCTTGCCAACTTTATCAACG 8934 Query 70447 TAGTGCTGACATTTTACTTGGTGTGCCATTCAATATTGCATCATATGCCTTACTTACACA 70506 |||||| || |||| | || |||||||| |||||||| ||||| |||| || || Sbjct 8933 TAGTGCAGATGTTTTCTTAGGGGTGCCATTTAATATTGCCAGCTATGCTCTACTGACTCA 8874 Query 70507 TCTTATTGCTGCTGAGTGTGGGTTAGGTGTTGGTGAGTTTGTTTGGACTGGTGGTGATA 70565 | | ||||| | ||||| ||||| || ||||| ||||| |||||||| ||||||| Sbjct 8873 TATGGTTGCTCAAGTTTGTGGTTTAGGCGTAGGTGATTTTGTCTGGACTGGCGGTGATA 8815 >seq551 Length=68878 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 7852 CGCCATTAGCTCAGATGGATAGAGCATCTGCCTTCTAAGTAGATGGTCACGGGTTCGAAT 7911 |||| |||||||| ||||||||||||| |||||||||| ||||||||| ||||||||| Sbjct 2910 CGCCTGTAGCTCAGTTGGATAGAGCATCCGCCTTCTAAGCGGATGGTCACAGGTTCGAAT 2851 Query 7912 CCTGTATGGCGTACCA 7927 ||||| |||| |||| Sbjct 2850 CCTGTCAGGCGCACCA 2835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335512811506033