Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031281.1 Length=43516 Score E Sequences producing significant alignments: (Bits) Value seq11405 105 2e-18 >seq11405 Length=110570 Score = 105 bits (116), Expect = 2e-18 Identities = 107/137 (78%), Gaps = 8/137 (6%) Strand=Plus/Minus Query 37849 ACTGCATTGGGTGATCGTCGGCGGCGAGAGCGGGCCCGGCGCTCGGCCGATGCACCCGGC 37908 |||| | |||||||||||||||||||||||||| ||||| || || || ||||| || | Sbjct 75395 ACTGGACTGGGTGATCGTCGGCGGCGAGAGCGGCCCCGGTGCGCGTCCCATGCATCCCGA 75336 Query 37909 CTGGGCGCGCTCACTCCGCGACCAATGCACGGCGGCCGATGTGC----CGTTCCTGTTCA 37964 |||||||| | || |||||||| ||| | ||||| || || | ||| |||||| Sbjct 75335 CTGGGCGCTCAGCCTGCGCGACCAGTGC---GAGGCCG-TGGGCACGGCCTTCATGTTCA 75280 Query 37965 AGCAGTGGGGTGAATGG 37981 |||||||||| || ||| Sbjct 75279 AGCAGTGGGGCGAGTGG 75263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139104720062324