Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq899 154 3e-32
seq6889 120 7e-22
seq3764 111 4e-19
seq504 111 4e-19
seq11974 93.3 1e-13
seq9216 89.7 1e-12
seq8560 86.0 1e-11
>seq899
Length=2520420
Score = 154 bits (170), Expect = 3e-32
Identities = 170/225 (76%), Gaps = 6/225 (3%)
Strand=Plus/Plus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
||||| | |||||| || || ||||| |||||||| ||||||||||| || | | ||
Sbjct 2265320 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 2265379
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
| ||||||||| || ||||||||| ||||| | |||||| ||||| | | ||| |||
Sbjct 2265380 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGGATGCCT 2265439
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060
|| |||||||| || || |||||| |||| | | |||| ||| ||| || ||
Sbjct 2265440 TCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTC---ACTTGGCTCCACCTCC 2265496
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
|||||||| ||||| || ||||| ||||| || |||| |||||||
Sbjct 2265497 AGAGTAATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 2265541
Score = 143 bits (158), Expect = 6e-29
Identities = 167/224 (75%), Gaps = 6/224 (3%)
Strand=Plus/Plus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
||||| | |||||| || || ||||| |||||||| ||||||||||| || | | ||
Sbjct 2264636 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 2264695
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
| ||||||||| || ||||||||| ||||| |||||||||||||| | | ||| ||
Sbjct 2264696 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCC 2264755
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060
|| || ||||| || || ||||| |||| | | |||| ||| ||| || ||
Sbjct 2264756 TCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 2264812
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || |||||||| | ||||||||||||| ||||||
Sbjct 2264813 AGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264856
Score = 143 bits (158), Expect = 6e-29
Identities = 167/224 (75%), Gaps = 6/224 (3%)
Strand=Plus/Plus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
||||| | |||||| || || ||||| |||||||| ||||||||||| || | | ||
Sbjct 2264864 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 2264923
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
| ||||||||| || ||||||||| ||||| |||||||||||||| | | ||| ||
Sbjct 2264924 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCC 2264983
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060
|| || ||||| || || ||||| |||| | | |||| ||| ||| || ||
Sbjct 2264984 TCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 2265040
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || |||||||| | ||||||||||||| ||||||
Sbjct 2265041 AGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265084
Score = 136 bits (150), Expect = 9e-27
Identities = 166/223 (74%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
||||| | |||||| || || ||||| |||||||| ||||||||||| || | | ||
Sbjct 2265092 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 2265151
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
| |||||||| || ||||||||| ||||| |||||||||||||| | | ||| ||
Sbjct 2265152 CGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCC 2265211
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAA 152061
|| || ||||| || || ||||| |||| | | ||| ||| ||| | || |||
Sbjct 2265212 TCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTC-CACCTCCAA 2265270
Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || || || |||||||| | ||||||||||||| ||||||
Sbjct 2265271 G-GTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265312
Score = 132 bits (146), Expect = 1e-25
Identities = 159/215 (74%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | || ||||| |||||||| ||||||||||| || | | || | |||||||
Sbjct 2264417 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2264476
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || ||||||||| ||||| |||||||||||||| | | ||| || || || |||
Sbjct 2264477 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 2264536
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || ||||| |||| | | |||| ||| ||| || || || || ||
Sbjct 2264537 TGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 2264593
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| |||||||| | ||||||||||||| ||||||
Sbjct 2264594 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264628
>seq6889
Length=11136585
Score = 120 bits (132), Expect = 7e-22
Identities = 164/228 (72%), Gaps = 6/228 (3%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
||| || | ||| || || || || || ||||| || |||||||||||||| | | |||
Sbjct 1034242 CCTCAGACGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGT 1034301
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| |||||||| || || ||||| ||||| |||||||||||||| | | || ||
Sbjct 1034302 GCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCC 1034361
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059
|||||| || || || || || ||| |||| | | |||| ||| ||| || ||
Sbjct 1034362 TTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACCTC 1034418
Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| || || || ||||| || || || |||||||||| ||||||||
Sbjct 1034419 CAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCATTTT 1034466
Score = 118 bits (130), Expect = 2e-21
Identities = 162/225 (72%), Gaps = 6/225 (3%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
||| || | || || || || || || |||||||| |||||||||||||| | | |||
Sbjct 1034014 CCTCAGACGGACTACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGT 1034073
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| | |||||| || || ||||| ||||| |||||||||||||| | | || ||
Sbjct 1034074 GCGGCAATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCC 1034133
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059
|||||| || || || || || || |||| | | |||| ||| |||||| ||
Sbjct 1034134 TTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCTACCTC 1034190
Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || ||||| || || ||||||||||||| ||||||
Sbjct 1034191 CAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034235
Score = 109 bits (120), Expect = 1e-18
Identities = 154/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || || || |||||||| || ||||||||||| | | ||| | ||||||
Sbjct 1033796 AGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 1033855
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||| ||||| |||||||||||||| | | || |||||||| ||
Sbjct 1033856 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 1033915
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || || |||| | |||| ||| |||| | || || || ||
Sbjct 1033916 TGGATCTTGGCCTTCACGTTCTCGGTGGTGTC---ACTGGGCTCTTCCTCCAGGGTGATG 1033972
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| ||||| || || ||||||||||||| ||||||
Sbjct 1033973 GCCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034007
>seq3764
Length=1885950
Score = 111 bits (122), Expect = 4e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| | || ||||||||||| ||||| ||||| |||||||| || | ||||| |
Sbjct 1780309 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 1780250
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|||||||| || || || | ||||| || || |||||||| | | |||||||||
Sbjct 1780249 CCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 1780190
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| || || || || || ||| | ||| | || || ||| || ||||||||
Sbjct 1780189 TTATCCTGGATCTTGGCCTTTACATTTCCTATTGTATCCGAGGGCTCGACCTCAAGAGTG 1780130
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGC 152102
|| || || ||| | || ||||||||||| | ||||
Sbjct 1780129 ATGGTCTTCCCCCTCAGGGTCTTCACGAAAATCTGC 1780094
>seq504
Length=1076656
Score = 111 bits (122), Expect = 4e-19
Identities = 157/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| | || ||| ||||||| |||| ||||| |||||||| || | ||||| |
Sbjct 268495 AGTCTCAACACTAGACGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 268436
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|||||||| || || || || ||||| || || |||||||| | | |||||||||
Sbjct 268435 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 268376
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| || || || || | || || | ||| | || || ||| || ||||||||
Sbjct 268375 TTATCCTGGATCTTGGGCTTTACGTTTTCTGTTGTATCCGAGGGCTCGACGTCAAGAGTG 268316
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| || || || || || ||||||||||| | |||||| ||
Sbjct 268315 ATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATCTT 268275
>seq11974
Length=740964
Score = 93.3 bits (102), Expect = 1e-13
Identities = 153/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| | | ||||| |||||| ||||| ||||| |||||||| || | ||||| |
Sbjct 250281 AGTCTCAACAAAAGATCAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 250222
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
||||||| || || || || ||||| || || |||||||| | | |||||||
Sbjct 250221 CCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAGCTCCTTCC 250162
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| | || | || || ||| | |||| | || | ||| || ||| ||||
Sbjct 250161 TTACCCTGGACCTTGACCTTTACATTTTCTATGGGATCCAAGGGCTCGACCTCAGGAGTG 250102
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| || || ||||| || ||||||||||| | |||||| ||
Sbjct 250101 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 250061
>seq9216
Length=6899875
Score = 89.7 bits (98), Expect = 1e-12
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955
|||||| ||||||| | ||| ||||| |||||||| || | ||||| | ||||||||
Sbjct 1291531 ACAAGAGGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCC 1291472
Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015
|| || || || ||||| || || || ||||| | ||||||||||| || ||
Sbjct 1291471 AGTTGCTTGCCAGCAAAGATCAGTCTTTGGTGGTCAGGAAGAATTCCTTCCTTATCCTGG 1291412
Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075
|| || || ||| | ||| | || || || || |||||||| || || ||
Sbjct 1291411 ATCTTGGCCTTTACATTTACTATTGTATCCGAGGGCTTGACCTCAAGAGTGATGGTCTTC 1291352
Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
| || || ||||||| ||| | |||||| ||
Sbjct 1291351 ACTGTCAGGGTCTTCATGAAAATCTGCATCTT 1291320
>seq8560
Length=3069389
Score = 86.0 bits (94), Expect = 1e-11
Identities = 156/224 (70%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| | || | ||||||||| ||||| ||||| |||||||| || | ||||| |
Sbjct 2390292 AGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 2390233
Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004
|||||||| | ||||| || || ||||| || || ||||| || | | |||||||
Sbjct 2390232 CCATCTTCCACTTGCTTT--CCAGCAAAGATCAGTCTTTGCTG-TCAGGAGGAATTCCTT 2390176
Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064
|||| || || || || | ||| |||| | || || ||| || | ||||
Sbjct 2390175 CCTTATCCTGGATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGACCTTGAGAG 2390116
Query 152065 TAATAGTTTTGCCCGTGA-GAGTCTTCACGAAGACCTGCATTTT 152107
| || || || || || | |||||||||| || | |||||| ||
Sbjct 2390115 TGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCATCTT 2390072
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153598177848589
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