Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq899 154 3e-32 seq6889 120 7e-22 seq3764 111 4e-19 seq504 111 4e-19 seq11974 93.3 1e-13 seq9216 89.7 1e-12 seq8560 86.0 1e-11 >seq899 Length=2520420 Score = 154 bits (170), Expect = 3e-32 Identities = 170/225 (76%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || ||||| |||||||| ||||||||||| || | | || Sbjct 2265320 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 2265379 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || ||||||||| ||||| | |||||| ||||| | | ||| ||| Sbjct 2265380 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGGATGCCT 2265439 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || |||||||| || || |||||| |||| | | |||| ||| ||| || || Sbjct 2265440 TCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTC---ACTTGGCTCCACCTCC 2265496 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| ||||| || ||||| ||||| || |||| ||||||| Sbjct 2265497 AGAGTAATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 2265541 Score = 143 bits (158), Expect = 6e-29 Identities = 167/224 (75%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || ||||| |||||||| ||||||||||| || | | || Sbjct 2264636 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 2264695 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || ||||||||| ||||| |||||||||||||| | | ||| || Sbjct 2264696 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCC 2264755 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || ||||| || || ||||| |||| | | |||| ||| ||| || || Sbjct 2264756 TCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 2264812 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| | ||||||||||||| |||||| Sbjct 2264813 AGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264856 Score = 143 bits (158), Expect = 6e-29 Identities = 167/224 (75%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || ||||| |||||||| ||||||||||| || | | || Sbjct 2264864 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 2264923 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || ||||||||| ||||| |||||||||||||| | | ||| || Sbjct 2264924 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCC 2264983 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || ||||| || || ||||| |||| | | |||| ||| ||| || || Sbjct 2264984 TCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 2265040 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| | ||||||||||||| |||||| Sbjct 2265041 AGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265084 Score = 136 bits (150), Expect = 9e-27 Identities = 166/223 (74%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || ||||| |||||||| ||||||||||| || | | || Sbjct 2265092 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 2265151 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || ||||||||| ||||| |||||||||||||| | | ||| || Sbjct 2265152 CGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCC 2265211 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAA 152061 || || ||||| || || ||||| |||| | | ||| ||| ||| | || ||| Sbjct 2265212 TCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTC-CACCTCCAA 2265270 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || |||||||| | ||||||||||||| |||||| Sbjct 2265271 G-GTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265312 Score = 132 bits (146), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || ||||| |||||||| ||||||||||| || | | || | ||||||| Sbjct 2264417 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2264476 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||||||| ||||| |||||||||||||| | | ||| || || || ||| Sbjct 2264477 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 2264536 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||| |||| | | |||| ||| ||| || || || || || Sbjct 2264537 TGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 2264593 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| | ||||||||||||| |||||| Sbjct 2264594 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264628 >seq6889 Length=11136585 Score = 120 bits (132), Expect = 7e-22 Identities = 164/228 (72%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| || || || || || ||||| || |||||||||||||| | | ||| Sbjct 1034242 CCTCAGACGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGT 1034301 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || ||||| ||||| |||||||||||||| | | || || Sbjct 1034302 GCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCC 1034361 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || || ||| |||| | | |||| ||| ||| || || Sbjct 1034362 TTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACCTC 1034418 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || ||||| || || || |||||||||| |||||||| Sbjct 1034419 CAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCATTTT 1034466 Score = 118 bits (130), Expect = 2e-21 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | || || || || || || |||||||| |||||||||||||| | | ||| Sbjct 1034014 CCTCAGACGGACTACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGT 1034073 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | | |||||| || || ||||| ||||| |||||||||||||| | | || || Sbjct 1034074 GCGGCAATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCC 1034133 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || || || |||| | | |||| ||| |||||| || Sbjct 1034134 TTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCTACCTC 1034190 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || ||||||||||||| |||||| Sbjct 1034191 CAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034235 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || |||||||| || ||||||||||| | | ||| | |||||| Sbjct 1033796 AGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 1033855 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| |||||||||||||| | | || |||||||| || Sbjct 1033856 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 1033915 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | |||| ||| |||| | || || || || Sbjct 1033916 TGGATCTTGGCCTTCACGTTCTCGGTGGTGTC---ACTGGGCTCTTCCTCCAGGGTGATG 1033972 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || || ||||||||||||| |||||| Sbjct 1033973 GCCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034007 >seq3764 Length=1885950 Score = 111 bits (122), Expect = 4e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || ||||||||||| ||||| ||||| |||||||| || | ||||| | Sbjct 1780309 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 1780250 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || | ||||| || || |||||||| | | ||||||||| Sbjct 1780249 CCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 1780190 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | ||| | || || ||| || |||||||| Sbjct 1780189 TTATCCTGGATCTTGGCCTTTACATTTCCTATTGTATCCGAGGGCTCGACCTCAAGAGTG 1780130 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGC 152102 || || || ||| | || ||||||||||| | |||| Sbjct 1780129 ATGGTCTTCCCCCTCAGGGTCTTCACGAAAATCTGC 1780094 >seq504 Length=1076656 Score = 111 bits (122), Expect = 4e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || ||| ||||||| |||| ||||| |||||||| || | ||||| | Sbjct 268495 AGTCTCAACACTAGACGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 268436 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| || || |||||||| | | ||||||||| Sbjct 268435 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 268376 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || | || || | ||| | || || ||| || |||||||| Sbjct 268375 TTATCCTGGATCTTGGGCTTTACGTTTTCTGTTGTATCCGAGGGCTCGACGTCAAGAGTG 268316 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || || ||||||||||| | |||||| || Sbjct 268315 ATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATCTT 268275 >seq11974 Length=740964 Score = 93.3 bits (102), Expect = 1e-13 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | | ||||| |||||| ||||| ||||| |||||||| || | ||||| | Sbjct 250281 AGTCTCAACAAAAGATCAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 250222 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||||| || || || || ||||| || || |||||||| | | ||||||| Sbjct 250221 CCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAGCTCCTTCC 250162 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || | || | || || ||| | |||| | || | ||| || ||| |||| Sbjct 250161 TTACCCTGGACCTTGACCTTTACATTTTCTATGGGATCCAAGGGCTCGACCTCAGGAGTG 250102 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| || ||||||||||| | |||||| || Sbjct 250101 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 250061 >seq9216 Length=6899875 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||| ||||||| | ||| ||||| |||||||| || | ||||| | |||||||| Sbjct 1291531 ACAAGAGGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCC 1291472 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || || || ||||| || || || ||||| | ||||||||||| || || Sbjct 1291471 AGTTGCTTGCCAGCAAAGATCAGTCTTTGGTGGTCAGGAAGAATTCCTTCCTTATCCTGG 1291412 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || || ||| | ||| | || || || || |||||||| || || || Sbjct 1291411 ATCTTGGCCTTTACATTTACTATTGTATCCGAGGGCTTGACCTCAAGAGTGATGGTCTTC 1291352 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || || ||||||| ||| | |||||| || Sbjct 1291351 ACTGTCAGGGTCTTCATGAAAATCTGCATCTT 1291320 >seq8560 Length=3069389 Score = 86.0 bits (94), Expect = 1e-11 Identities = 156/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | ||||||||| ||||| ||||| |||||||| || | ||||| | Sbjct 2390292 AGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 2390233 Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 |||||||| | ||||| || || ||||| || || ||||| || | | ||||||| Sbjct 2390232 CCATCTTCCACTTGCTTT--CCAGCAAAGATCAGTCTTTGCTG-TCAGGAGGAATTCCTT 2390176 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| || || || || | ||| |||| | || || ||| || | |||| Sbjct 2390175 CCTTATCCTGGATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGACCTTGAGAG 2390116 Query 152065 TAATAGTTTTGCCCGTGA-GAGTCTTCACGAAGACCTGCATTTT 152107 | || || || || || | |||||||||| || | |||||| || Sbjct 2390115 TGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCATCTT 2390072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153598177848589