Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq7041 86.0 7e-12 seq13424 84.2 3e-11 seq7278 84.2 3e-11 seq9026 82.4 9e-11 seq9020 82.4 9e-11 >seq7041 Length=191181 Score = 86.0 bits (94), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 157427 TAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGCC 157486 ||||||| ||||||||||||||||||||||||||||| |||||| ||||||| ||| || Sbjct 50773 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTGCA 50832 Query 157487 TGAGACGCCA 157496 | | ||||| Sbjct 50833 GGGGTCGCCA 50842 >seq13424 Length=92847 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 158205 TCGGGGTGTAGCTCAGTTTGGTAGAGCGCCGTCTTTGGGAGGCGGATGCCGTAGGTTCGA 158264 |||||| ||||| |||| |||||| ||||| ||||||||| ||||| || |||||||| Sbjct 91479 TCGGGGAGTAGCGCAGTCTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCGA 91420 Query 158265 ATCCTATCACCCCGAC 158280 ||||| || ||||||| Sbjct 91419 ATCCTGTCTCCCCGAC 91404 >seq7278 Length=293576 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 17703 ATGGGGTTGTAGCTCAGTCGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGAGGGTTCA 17762 ||| || |||||||||||||||||||| ||| ||||||||||| ||| |||| |||||| Sbjct 292191 ATGCGGGTGTAGCTCAGTCGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCG 292132 Query 17763 AGTCCCTTCAGTCCCG 17778 || ||| ||| || || Sbjct 292131 AGCCCCGTCACTCGCG 292116 >seq9026 Length=54586 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 17704 TGGGGTTGTAGCTCAGTCGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGAGGGTTCAA 17763 || || ||||||||||| |||||||||||| ||||||||||| ||| |||| |||||| | Sbjct 48352 TGCGGATGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGA 48411 Query 17764 GTCCCTTCAGTCCCG 17778 | ||| ||| || || Sbjct 48412 GCCCCGTCATTCGCG 48426 >seq9020 Length=152994 Score = 82.4 bits (90), Expect = 9e-11 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 158116 ATGGAAAGGTGGTCGAGTGGTTGATGGCTCTGGTCTTGAAAACCAGCG-AAGTGAGAG-C 158173 ||||| |||||| ||||||||| | ||| ||||||||||||| || | ||| || | Sbjct 45594 ATGGACAGGTGGCCGAGTGGTTTAAGGCAGCGGTCTTGAAAACCGCCGTAGGTGGAAGCC 45653 Query 158174 TTCCGTGGGTTCGAATCCCACCCTTTCCG 158202 | |||||||||||||||||||||| |||| Sbjct 45654 TACCGTGGGTTCGAATCCCACCCTGTCCG 45682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596194952623440