Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_031935.1
Length=186386
Score E
Sequences producing significant alignments: (Bits) Value
seq7041 86.0 7e-12
seq13424 84.2 3e-11
seq7278 84.2 3e-11
seq9026 82.4 9e-11
seq9020 82.4 9e-11
>seq7041
Length=191181
Score = 86.0 bits (94), Expect = 7e-12
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 157427 TAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGCC 157486
||||||| ||||||||||||||||||||||||||||| |||||| ||||||| ||| ||
Sbjct 50773 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTGCA 50832
Query 157487 TGAGACGCCA 157496
| | |||||
Sbjct 50833 GGGGTCGCCA 50842
>seq13424
Length=92847
Score = 84.2 bits (92), Expect = 3e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 158205 TCGGGGTGTAGCTCAGTTTGGTAGAGCGCCGTCTTTGGGAGGCGGATGCCGTAGGTTCGA 158264
|||||| ||||| |||| |||||| ||||| ||||||||| ||||| || ||||||||
Sbjct 91479 TCGGGGAGTAGCGCAGTCTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCGA 91420
Query 158265 ATCCTATCACCCCGAC 158280
||||| || |||||||
Sbjct 91419 ATCCTGTCTCCCCGAC 91404
>seq7278
Length=293576
Score = 84.2 bits (92), Expect = 3e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 17703 ATGGGGTTGTAGCTCAGTCGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGAGGGTTCA 17762
||| || |||||||||||||||||||| ||| ||||||||||| ||| |||| ||||||
Sbjct 292191 ATGCGGGTGTAGCTCAGTCGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCG 292132
Query 17763 AGTCCCTTCAGTCCCG 17778
|| ||| ||| || ||
Sbjct 292131 AGCCCCGTCACTCGCG 292116
>seq9026
Length=54586
Score = 82.4 bits (90), Expect = 9e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 17704 TGGGGTTGTAGCTCAGTCGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGAGGGTTCAA 17763
|| || ||||||||||| |||||||||||| ||||||||||| ||| |||| |||||| |
Sbjct 48352 TGCGGATGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGA 48411
Query 17764 GTCCCTTCAGTCCCG 17778
| ||| ||| || ||
Sbjct 48412 GCCCCGTCATTCGCG 48426
>seq9020
Length=152994
Score = 82.4 bits (90), Expect = 9e-11
Identities = 73/89 (82%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 158116 ATGGAAAGGTGGTCGAGTGGTTGATGGCTCTGGTCTTGAAAACCAGCG-AAGTGAGAG-C 158173
||||| |||||| ||||||||| | ||| ||||||||||||| || | ||| || |
Sbjct 45594 ATGGACAGGTGGCCGAGTGGTTTAAGGCAGCGGTCTTGAAAACCGCCGTAGGTGGAAGCC 45653
Query 158174 TTCCGTGGGTTCGAATCCCACCCTTTCCG 158202
| |||||||||||||||||||||| ||||
Sbjct 45654 TACCGTGGGTTCGAATCCCACCCTGTCCG 45682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596194952623440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |