Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq9026 89.7 6e-13 seq7099 86.0 7e-12 >seq9026 Length=54586 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 165494 TTAGCTCAGCGGTAGAGCACCTCGTTTACACCGAGATTGTCGGGGGTTCGATCCCCTCAT 165553 |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 51122 TTAGCTCAGCGGTAGAGCGTCTCGTTTACACCGAGAGGGTCGGGGGTTCGATCCCCTCAC 51063 Query 165554 CTCCCAC 165560 ||||| Sbjct 51062 TGCCCAC 51056 >seq7099 Length=100963 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 165488 GGGAGATTAGCTCAGC-GGTAGAGCACCTCGTTTACACCGAGATTGTCGGGGGTTCGATC 165546 ||| ||||||||||| |||||||| |||||||||||||||| |||||| ||||||| | Sbjct 78770 GGGCGATTAGCTCAGTTGGTAGAGCGTCTCGTTTACACCGAGAATGTCGGCGGTTCGAGC 78711 Query 165547 CCCTCATCTCCCAC 165560 || ||||| ||||| Sbjct 78710 CCGTCATCGCCCAC 78697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592086926053680