Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq8995 224 1e-53 seq608 107 2e-18 seq7661 98.7 1e-15 >seq8995 Length=8301158 Score = 224 bits (248), Expect = 1e-53 Identities = 397/579 (69%), Gaps = 0/579 (0%) Strand=Plus/Plus Query 23514 AAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGG 23573 ||| ||||| || | || ||||| || ||||| | |||||| ||||| || | || || Sbjct 6971670 AAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 6971729 Query 23574 CATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACC 23633 ||| | ||||||||| || | ||| ||||| | ||||| || ||||||||||| || || Sbjct 6971730 CATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCC 6971789 Query 23634 CTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCA 23693 || || || |||||||| || | |||| ||| |||| || | | || | |||| Sbjct 6971790 TTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCCA 6971849 Query 23694 tttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAG 23753 | ||||| |||||| || ||||| || || ||||| || || ||||| Sbjct 6971850 GCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAG 6971909 Query 23754 AAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGA 23813 ||| |||||| |||| | || || || ||||| || | ||||||||||||||| Sbjct 6971910 AAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGA 6971969 Query 23814 ATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAAC 23873 ||| || ||||| || ||||| || || ||||| ||||| ||| || | | ||||| Sbjct 6971970 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAAC 6972029 Query 23874 ATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAA 23933 || | ||| | | | || ||||| || || || |||||||| || |||||||| Sbjct 6972030 TTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 6972089 Query 23934 AGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCATTAAT 23993 ||| || |||| ||||||| ||| || |||| | || ||| | | ||| Sbjct 6972090 AGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAAT 6972149 Query 23994 ATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACAT 24053 || || || | || || || ||| |||||||||| ||| || ||||||||| Sbjct 6972150 GTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACAT 6972209 Query 24054 TAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092 |||||||||||| | || || ||||| || || || Sbjct 6972210 CTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 6972248 Score = 109 bits (120), Expect = 6e-19 Identities = 170/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 23514 AAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGG 23573 ||| ||||| || | || ||||| || ||||| | |||||| ||||| || | || || Sbjct 6968802 AAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 6968861 Query 23574 CATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACC 23633 ||| | ||||||||| || | ||| ||||| | ||||| || ||||||||||| || || Sbjct 6968862 CATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCC 6968921 Query 23634 CTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCA 23693 || || || |||||||| || | |||| ||| |||| || | | || | |||| Sbjct 6968922 TTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCCA 6968981 Query 23694 tttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAG 23753 | ||||| |||||| || ||||| || || ||||| || || ||||| Sbjct 6968982 GCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAG 6969041 Query 23754 AAA 23756 ||| Sbjct 6969042 AAA 6969044 >seq608 Length=3558542 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || || || | ||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 2088602 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 2088543 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||| ||||| |||||||| ||||| || |||||||| || || ||||| ||||||| Sbjct 2088542 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 2088483 Query 23651 CCAC 23654 |||| Sbjct 2088482 CCAC 2088479 >seq7661 Length=1898141 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| || ||||| | |||||| ||||| || | || ||||| | ||||||||| || Sbjct 818597 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 818538 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||| | ||||| || ||||||||||| || || || || || |||||||| Sbjct 818537 AGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 818478 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 818477 ACCACACGT 818469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521389836402600