Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 224 1e-53
seq608 107 2e-18
seq7661 98.7 1e-15
>seq8995
Length=8301158
Score = 224 bits (248), Expect = 1e-53
Identities = 397/579 (69%), Gaps = 0/579 (0%)
Strand=Plus/Plus
Query 23514 AAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGG 23573
||| ||||| || | || ||||| || ||||| | |||||| ||||| || | || ||
Sbjct 6971670 AAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 6971729
Query 23574 CATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACC 23633
||| | ||||||||| || | ||| ||||| | ||||| || ||||||||||| || ||
Sbjct 6971730 CATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCC 6971789
Query 23634 CTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCA 23693
|| || || |||||||| || | |||| ||| |||| || | | || | ||||
Sbjct 6971790 TTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCCA 6971849
Query 23694 tttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAG 23753
| ||||| |||||| || ||||| || || ||||| || || |||||
Sbjct 6971850 GCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAG 6971909
Query 23754 AAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGA 23813
||| |||||| |||| | || || || ||||| || | |||||||||||||||
Sbjct 6971910 AAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGA 6971969
Query 23814 ATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAAC 23873
||| || ||||| || ||||| || || ||||| ||||| ||| || | | |||||
Sbjct 6971970 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAAC 6972029
Query 23874 ATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAA 23933
|| | ||| | | | || ||||| || || || |||||||| || ||||||||
Sbjct 6972030 TTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 6972089
Query 23934 AGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCATTAAT 23993
||| || |||| ||||||| ||| || |||| | || ||| | | |||
Sbjct 6972090 AGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAAT 6972149
Query 23994 ATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACAT 24053
|| || || | || || || ||| |||||||||| ||| || |||||||||
Sbjct 6972150 GTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACAT 6972209
Query 24054 TAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092
|||||||||||| | || || ||||| || || ||
Sbjct 6972210 CTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 6972248
Score = 109 bits (120), Expect = 6e-19
Identities = 170/243 (70%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 23514 AAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGG 23573
||| ||||| || | || ||||| || ||||| | |||||| ||||| || | || ||
Sbjct 6968802 AAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 6968861
Query 23574 CATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACC 23633
||| | ||||||||| || | ||| ||||| | ||||| || ||||||||||| || ||
Sbjct 6968862 CATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCC 6968921
Query 23634 CTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCA 23693
|| || || |||||||| || | |||| ||| |||| || | | || | ||||
Sbjct 6968922 TTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCCA 6968981
Query 23694 tttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAG 23753
| ||||| |||||| || ||||| || || ||||| || || |||||
Sbjct 6968982 GCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAG 6969041
Query 23754 AAA 23756
|||
Sbjct 6969042 AAA 6969044
>seq608
Length=3558542
Score = 107 bits (118), Expect = 2e-18
Identities = 98/124 (79%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590
||||||| || || || | ||||| ||||| || | ||| ||||| | ||||| ||| |
Sbjct 2088602 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 2088543
Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650
| | ||| ||||| |||||||| ||||| || |||||||| || || ||||| |||||||
Sbjct 2088542 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 2088483
Query 23651 CCAC 23654
||||
Sbjct 2088482 CCAC 2088479
>seq7661
Length=1898141
Score = 98.7 bits (108), Expect = 1e-15
Identities = 99/129 (77%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592
||||| || ||||| | |||||| ||||| || | || ||||| | ||||||||| ||
Sbjct 818597 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 818538
Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652
| ||| ||||| | ||||| || ||||||||||| || || || || || ||||||||
Sbjct 818537 AGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 818478
Query 23653 ACAAGACGT 23661
|| | ||||
Sbjct 818477 ACCACACGT 818469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521389836402600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |