Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq6889 138 8e-28
seq899 138 8e-28
seq3764 114 9e-21
seq504 105 5e-18
seq12661 89.7 4e-13
seq11974 87.8 1e-12
>seq6889
Length=11136585
Score = 138 bits (152), Expect = 8e-28
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || ||||| | | |||||||| || || |||||| ||||||||||||||
Sbjct 1034233 CATACCACCCCTCAGACGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATC 1034292
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || ||| | || ||||||||||| ||||||||||| | | |||||| || |
Sbjct 1034293 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGG 1034352
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
|| | |||||||| ||| ||||| ||||| | | |||||||| || ||
Sbjct 1034353 GGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTC 1034412
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||||| || || ||||| || || ||||| |||||||||||||||||
Sbjct 1034413 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCAT 1034463
Score = 127 bits (140), Expect = 1e-24
Identities = 169/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || ||||| | | |||||||| || || ||| || ||||||||||||||
Sbjct 1034005 CATACCACCCCTCAGACGGACTACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATC 1034064
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || ||| || ||||||||||| ||||||||||| | | |||||| || |
Sbjct 1034065 AGAAAGAGTGCGGCAATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGG 1034124
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
|| | |||||||| ||| ||||| |||| | |||| | |||||||| || |
Sbjct 1034125 GGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCT 1034183
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| ||||||| || || ||||| || || ||||||||||||||||| |||||
Sbjct 1034184 CTACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034235
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || || ||| || || ||||||||||| | || ||| | || |||
Sbjct 1033799 ACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1033858
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||||||||| | | |||||| || | || | |||||||| |||
Sbjct 1033859 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1033918
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| |||| | |||| | ||||||| || || |||||| || || | |||
Sbjct 1033919 ATCTTGGCCTTC-ACGTTCTCGGTGGTGTCACTGGGCTCTTCCTCCAGGGTGATGGCCTT 1033977
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || ||||||||||||||||| |||||
Sbjct 1033978 GCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034007
>seq899
Length=2520420
Score = 138 bits (152), Expect = 8e-28
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || ||||| || | | |||||||| || ||| ||| || ||||||||||| ||
Sbjct 2265310 CATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 2265369
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || |||| | || |||||||| ||||||||||||||||| | ||| || ||||
Sbjct 2265370 AGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGG 2265429
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
|| | ||||| ||||| ||||||| ||| | | | |||||||| | ||
Sbjct 2265430 GGGGATGCCTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTTGGCTC 2265489
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||||| ||||| || || || ||||||||||| || ||||| |||||
Sbjct 2265490 CACCTCCAGAGTAATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 2265540
Score = 132 bits (146), Expect = 3e-26
Identities = 170/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || ||||| || | | |||||||| || ||| ||| || ||||||||||| ||
Sbjct 2264626 CATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 2264685
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || |||| | || |||||||| |||||||||||||||| | |||||| ||||
Sbjct 2264686 AGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGG 2264745
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
|| | || || || || ||||| || | | |||| | |||||||| || |
Sbjct 2264746 GGGGATGCCCTCTTTGTCTTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCACTGGGCT 2264804
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||||| || || ||||| ||||| | ||||||||||||||| |||||
Sbjct 2264805 CCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264856
Score = 132 bits (146), Expect = 3e-26
Identities = 170/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || ||||| || | | |||||||| || ||| ||| || ||||||||||| ||
Sbjct 2264854 CATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 2264913
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || |||| | || |||||||| |||||||||||||||| | |||||| ||||
Sbjct 2264914 AGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGG 2264973
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
|| | || || || || ||||| || | | |||| | |||||||| || |
Sbjct 2264974 GGGGATGCCCTCTTTGTCTTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCACTGGGCT 2265032
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||||| || || ||||| ||||| | ||||||||||||||| |||||
Sbjct 2265033 CCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265084
Score = 127 bits (140), Expect = 1e-24
Identities = 169/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || ||||| || | | |||||||| || ||| ||| || ||||||||||| ||
Sbjct 2265082 CATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 2265141
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || ||| | || |||||||| |||||||||||||||| | |||||| ||||
Sbjct 2265142 AGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGG 2265201
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
|| | || || || || ||||| || | | |||| | |||||||| || |
Sbjct 2265202 GGGGATGCCCTCTTTGTCTTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCACTGGGCT 2265260
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||||| || || ||||| ||||| | ||||||||||||||| |||||
Sbjct 2265261 CCACCTCCAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265312
Score = 125 bits (138), Expect = 5e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || |||| | || |||| ||| || ||| ||| || ||||||||||| || |
Sbjct 2264402 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2264461
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| |||| | || |||||||| |||||||||||||||| | |||||| |||| ||
Sbjct 2264462 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2264521
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289
| || || || || ||||| || | | |||| | |||||||| || |||||
Sbjct 2264522 ATGCCCTCTTTGTCTTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 2264580
Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || || ||||| ||||| | ||||||||||||||| |||||
Sbjct 2264581 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264628
>seq3764
Length=1885950
Score = 114 bits (126), Expect = 9e-21
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
||||||||||| || ||||| ||| ||||||||| |||||||| || | | ||
Sbjct 1780309 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 1780250
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || ||||| ||||| || ||||||||| | ||||| || | ||| | ||||||
Sbjct 1780249 CCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 1780190
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| ||| ||||| ||| | ||||||| || || | || || ||||| | ||
Sbjct 1780189 TTATCCTGGATCTTGGCCTTTACATTTCCTATTGTATCCGAGGGCTCGACCTCAAGAGTG 1780130
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGC 44335
|| ||||| ||| | |||||||||||||| || |||
Sbjct 1780129 ATGGTCTTCCCCCTCAGGGTCTTCACGAAAATCTGC 1780094
>seq504
Length=1076656
Score = 105 bits (116), Expect = 5e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
||||||||||| || |||| ||| ||||||||| |||||||| || | | |
Sbjct 268495 AGTCTCAACACTAGACGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 268436
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || ||||| ||||| || |||||||||| | ||||| || | ||| | ||||||
Sbjct 268435 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 268376
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| ||| ||||| |||| | || || | || || | || || || || | ||
Sbjct 268375 TTATCCTGGATCTTGGGCTTTACGTTTTCTGTTGTATCCGAGGGCTCGACGTCAAGAGTG 268316
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| || || |||||||||||||| || |||||
Sbjct 268315 ATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 268278
>seq12661
Length=3984070
Score = 89.7 bits (98), Expect = 4e-13
Identities = 150/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGT 44186
||||||||| || ||| ||| || ||||| ||||| || | | | || || | || |
Sbjct 2676664 CACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAAAGTGAGGC-CATCCT 2676606
Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246
||||||| || || |||||||||| || |||||| || | || | || ||||| ||
Sbjct 2676605 CCAGCTGTTTGCCCGCAAAGATCAGACACTGCTGGTCAGGTGGGATGCCCTCCTTGTCTT 2676546
Query 44247 TTATCTTCTGCTTCAATGTTCCTA-TGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
|| || |||| | ||| | | ||||| || || ||||| | || || |||
Sbjct 2676545 GGATTTTG-GCTTTGACATTCTCAGTAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 2676487
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| ||||||||||| ||||| |||||
Sbjct 2676486 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2676455
>seq11974
Length=740964
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
|||||||||| || | ||| ||| ||||||||| |||||||| || | | |
Sbjct 250281 AGTCTCAACAAAAGATCAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 250222
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || | ||| ||||| || |||||||||| | ||||| || | ||| | ||||||
Sbjct 250221 CCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAGCTCCTTCC 250162
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| || | ||| ||| | || |||||| || || || ||||| ||
Sbjct 250161 TTACCCTGGACCTTGACCTTTACATTTTCTATGGGATCCAAGGGCTCGACCTCAGGAGTG 250102
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| ||||| |||||||||||||| || |||||
Sbjct 250101 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 250064
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359924330399403
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