Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq6889 138 8e-28 seq899 138 8e-28 seq3764 114 9e-21 seq504 105 5e-18 seq12661 89.7 4e-13 seq11974 87.8 1e-12 >seq6889 Length=11136585 Score = 138 bits (152), Expect = 8e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | | |||||||| || || |||||| |||||||||||||| Sbjct 1034233 CATACCACCCCTCAGACGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATC 1034292 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| ||||||||||| | | |||||| || | Sbjct 1034293 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGG 1034352 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||| ||||| | | |||||||| || || Sbjct 1034353 GGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTC 1034412 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||| || || ||||| ||||||||||||||||| Sbjct 1034413 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCAT 1034463 Score = 127 bits (140), Expect = 1e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | | |||||||| || || ||| || |||||||||||||| Sbjct 1034005 CATACCACCCCTCAGACGGACTACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATC 1034064 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| || ||||||||||| ||||||||||| | | |||||| || | Sbjct 1034065 AGAAAGAGTGCGGCAATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGG 1034124 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| |||| | |||| | |||||||| || | Sbjct 1034125 GGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCT 1034183 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||| || || ||||| || || ||||||||||||||||| ||||| Sbjct 1034184 CTACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034235 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || || ||| || || ||||||||||| | || ||| | || ||| Sbjct 1033799 ACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1033858 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | | |||||| || | || | |||||||| ||| Sbjct 1033859 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1033918 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | |||| | ||||||| || || |||||| || || | ||| Sbjct 1033919 ATCTTGGCCTTC-ACGTTCTCGGTGGTGTCACTGGGCTCTTCCTCCAGGGTGATGGCCTT 1033977 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||||||||||||| ||||| Sbjct 1033978 GCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034007 >seq899 Length=2520420 Score = 138 bits (152), Expect = 8e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | |||||||| || ||| ||| || ||||||||||| || Sbjct 2265310 CATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 2265369 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || |||||||| ||||||||||||||||| | ||| || |||| Sbjct 2265370 AGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGG 2265429 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||| ||||| ||||||| ||| | | | |||||||| | || Sbjct 2265430 GGGGATGCCTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTTGGCTC 2265489 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| ||||| || || || ||||||||||| || ||||| ||||| Sbjct 2265490 CACCTCCAGAGTAATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 2265540 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | |||||||| || ||| ||| || ||||||||||| || Sbjct 2264626 CATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 2264685 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || |||||||| |||||||||||||||| | |||||| |||| Sbjct 2264686 AGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGG 2264745 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || || || || ||||| || | | |||| | |||||||| || | Sbjct 2264746 GGGGATGCCCTCTTTGTCTTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCACTGGGCT 2264804 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| ||||| | ||||||||||||||| ||||| Sbjct 2264805 CCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264856 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | |||||||| || ||| ||| || ||||||||||| || Sbjct 2264854 CATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 2264913 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || |||||||| |||||||||||||||| | |||||| |||| Sbjct 2264914 AGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGG 2264973 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || || || || ||||| || | | |||| | |||||||| || | Sbjct 2264974 GGGGATGCCCTCTTTGTCTTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCACTGGGCT 2265032 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| ||||| | ||||||||||||||| ||||| Sbjct 2265033 CCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265084 Score = 127 bits (140), Expect = 1e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | |||||||| || ||| ||| || ||||||||||| || Sbjct 2265082 CATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 2265141 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || |||||||| |||||||||||||||| | |||||| |||| Sbjct 2265142 AGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGG 2265201 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || || || || ||||| || | | |||| | |||||||| || | Sbjct 2265202 GGGGATGCCCTCTTTGTCTTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCACTGGGCT 2265260 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| ||||| | ||||||||||||||| ||||| Sbjct 2265261 CCACCTCCAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265312 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || |||| | || |||| ||| || ||| ||| || ||||||||||| || | Sbjct 2264402 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2264461 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| | || |||||||| |||||||||||||||| | |||||| |||| || Sbjct 2264462 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2264521 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || || || || ||||| || | | |||| | |||||||| || ||||| Sbjct 2264522 ATGCCCTCTTTGTCTTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 2264580 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || ||||| ||||| | ||||||||||||||| ||||| Sbjct 2264581 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264628 >seq3764 Length=1885950 Score = 114 bits (126), Expect = 9e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| ||||||||| |||||||| || | | || Sbjct 1780309 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 1780250 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||| ||||| || ||||||||| | ||||| || | ||| | |||||| Sbjct 1780249 CCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 1780190 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | ||||||| || || | || || ||||| | || Sbjct 1780189 TTATCCTGGATCTTGGCCTTTACATTTCCTATTGTATCCGAGGGCTCGACCTCAAGAGTG 1780130 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGC 44335 || ||||| ||| | |||||||||||||| || ||| Sbjct 1780129 ATGGTCTTCCCCCTCAGGGTCTTCACGAAAATCTGC 1780094 >seq504 Length=1076656 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || |||| ||| ||||||||| |||||||| || | | | Sbjct 268495 AGTCTCAACACTAGACGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 268436 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||| ||||| || |||||||||| | ||||| || | ||| | |||||| Sbjct 268435 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 268376 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| |||| | || || | || || | || || || || | || Sbjct 268375 TTATCCTGGATCTTGGGCTTTACGTTTTCTGTTGTATCCGAGGGCTCGACGTCAAGAGTG 268316 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| || || |||||||||||||| || ||||| Sbjct 268315 ATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 268278 >seq12661 Length=3984070 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGT 44186 ||||||||| || ||| ||| || ||||| ||||| || | | | || || | || | Sbjct 2676664 CACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAAAGTGAGGC-CATCCT 2676606 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 ||||||| || || |||||||||| || |||||| || | || | || ||||| || Sbjct 2676605 CCAGCTGTTTGCCCGCAAAGATCAGACACTGCTGGTCAGGTGGGATGCCCTCCTTGTCTT 2676546 Query 44247 TTATCTTCTGCTTCAATGTTCCTA-TGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 || || |||| | ||| | | ||||| || || ||||| | || || ||| Sbjct 2676545 GGATTTTG-GCTTTGACATTCTCAGTAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 2676487 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||||||||| ||||| ||||| Sbjct 2676486 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2676455 >seq11974 Length=740964 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||||||||| || | ||| ||| ||||||||| |||||||| || | | | Sbjct 250281 AGTCTCAACAAAAGATCAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 250222 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || | ||| ||||| || |||||||||| | ||||| || | ||| | |||||| Sbjct 250221 CCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAGCTCCTTCC 250162 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || || | ||| ||| | || |||||| || || || ||||| || Sbjct 250161 TTACCCTGGACCTTGACCTTTACATTTTCTATGGGATCCAAGGGCTCGACCTCAGGAGTG 250102 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| |||||||||||||| || ||||| Sbjct 250101 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 250064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359924330399403