Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq6590 172 8e-38 seq9575 100 4e-16 >seq6590 Length=8745084 Score = 172 bits (190), Expect = 8e-38 Identities = 188/250 (75%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || || | ||| || | | | |||||||||| ||||| || | |||||||||||| ||| Sbjct 4159399 CCTATCAGGATTAGCCTACTTGTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCT 4159340 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 ||||| || ||||| || || ||||| ||||||| ||||| || ||||| |||||||| Sbjct 4159339 TGTTTAAGTACATCACATACTCTGTTATGTTCCCGCAGCCAAATGGTGGCATACATCATC 4159280 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACT 9414 || ||||| ||||| ||||| |||| || || ||||| | || || ||| || | Sbjct 4159279 AGACCAGGCACCAGACCAAAGACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAATA 4159220 Query 9415 TCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCG 9474 | || || |||||||| | ||||| |||||||| | ||| |||||||| || ||| Sbjct 4159219 TGAGGCGGGTAGATCATTTCAACCTGAGTATCTTTGACAGTGGGAGGATACATCTCTCCG 4159160 Query 9475 TCAATCATCT 9484 | |||||||| Sbjct 4159159 TTAATCATCT 4159150 Score = 172 bits (190), Expect = 8e-38 Identities = 224/310 (72%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| |||| | ||| | || || ||||| || || ||||| || |||| ||||||| Sbjct 4161068 CATCTTGAACACTGAATGAGGTAAAGGGACAGCCTTTCACGTTACTGCAGATGAGAGACT 4161009 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 |||| | || | |||| ||| || || || ||||| ||||| ||||| ||||||| Sbjct 4161008 GAATTGAGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCGAAAGTGCTAGGCTTCC 4160949 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 ||||| | || || || || || |||| || ||||| |||||||| || ||||| Sbjct 4160948 AGTACTCAGGAGAACATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGTGCCCCGG 4160889 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 || | ||| |||| || |||||||||| |||||||||||| || |||| | ||| Sbjct 4160888 CTTCTACCATGGTCTCCCCAAAGATGGCGTCGGGACGGGGCTTCTCTACCAGAAGGGCGG 4160829 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576 |||||||||| || || | ||||||||| || || | || ||||| || |||| Sbjct 4160828 GATACAGCTCCATGGCATCTATGTCTCCGTAGAGCGCTTCTAACTCTGCAGCCATTTCCT 4160769 Query 8577 TTTCTCCTGT 8586 | |||||||| Sbjct 4160768 TCTCTCCTGT 4160759 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 ||| |||||||| | ||| |||||||| || || ||||| | ||||| ||| | || Sbjct 4158371 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 4158312 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 4158311 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAGATTTGTGCCCTGGGGATC 4158252 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCT 9827 ||| |||| | || | ||||| ||||| |||||| | | || ||| || |||| Sbjct 4158251 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAACTTCTTTCGAATCAGGAAGCT 4158193 >seq9575 Length=4383032 Score = 100 bits (110), Expect = 4e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| || | |||||||| || || ||||| | ||| || || Sbjct 3945766 TCACCGATGAGGATGAGGCGGGCCGTCTGGAAGAGCTGTTCGTCGCCCCAGGTGGGGTGC 3945707 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | |||||| || | |||||||| |||||||| | | Sbjct 3945706 TCAGCCTTCAGCAGGTCACACACGCGGTTGTGCTCACGCAGCCAGATCGTGGCGTAGAGC 3945647 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | ||| ||||| |||| || || ||||||| Sbjct 3945646 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACAGCCA 3945604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716741856903360