Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq6590 172 8e-38
seq9575 100 4e-16
>seq6590
Length=8745084
Score = 172 bits (190), Expect = 8e-38
Identities = 188/250 (75%), Gaps = 0/250 (0%)
Strand=Plus/Minus
Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294
|| || | ||| || | | | |||||||||| ||||| || | |||||||||||| |||
Sbjct 4159399 CCTATCAGGATTAGCCTACTTGTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCT 4159340
Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354
||||| || ||||| || || ||||| ||||||| ||||| || ||||| ||||||||
Sbjct 4159339 TGTTTAAGTACATCACATACTCTGTTATGTTCCCGCAGCCAAATGGTGGCATACATCATC 4159280
Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACT 9414
|| ||||| ||||| ||||| |||| || || ||||| | || || ||| || |
Sbjct 4159279 AGACCAGGCACCAGACCAAAGACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAATA 4159220
Query 9415 TCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCG 9474
| || || |||||||| | ||||| |||||||| | ||| |||||||| || |||
Sbjct 4159219 TGAGGCGGGTAGATCATTTCAACCTGAGTATCTTTGACAGTGGGAGGATACATCTCTCCG 4159160
Query 9475 TCAATCATCT 9484
| ||||||||
Sbjct 4159159 TTAATCATCT 4159150
Score = 172 bits (190), Expect = 8e-38
Identities = 224/310 (72%), Gaps = 0/310 (0%)
Strand=Plus/Minus
Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336
|||| |||| | ||| | || || ||||| || || ||||| || |||| |||||||
Sbjct 4161068 CATCTTGAACACTGAATGAGGTAAAGGGACAGCCTTTCACGTTACTGCAGATGAGAGACT 4161009
Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396
|||| | || | |||| ||| || || || ||||| ||||| ||||| |||||||
Sbjct 4161008 GAATTGAGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCGAAAGTGCTAGGCTTCC 4160949
Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456
||||| | || || || || || |||| || ||||| |||||||| || |||||
Sbjct 4160948 AGTACTCAGGAGAACATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGTGCCCCGG 4160889
Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516
|| | ||| |||| || |||||||||| |||||||||||| || |||| | |||
Sbjct 4160888 CTTCTACCATGGTCTCCCCAAAGATGGCGTCGGGACGGGGCTTCTCTACCAGAAGGGCGG 4160829
Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576
|||||||||| || || | ||||||||| || || | || ||||| || ||||
Sbjct 4160828 GATACAGCTCCATGGCATCTATGTCTCCGTAGAGCGCTTCTAACTCTGCAGCCATTTCCT 4160769
Query 8577 TTTCTCCTGT 8586
| ||||||||
Sbjct 4160768 TCTCTCCTGT 4160759
Score = 111 bits (122), Expect = 2e-19
Identities = 132/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
||| |||||||| | ||| |||||||| || || ||||| | ||||| ||| | ||
Sbjct 4158371 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 4158312
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
||| || || ||||| || ||| |||| || |||||||| | || ||||||||||||||
Sbjct 4158311 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAGATTTGTGCCCTGGGGATC 4158252
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCT 9827
||| |||| | || | ||||| ||||| |||||| | | || ||| || ||||
Sbjct 4158251 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAACTTCTTTCGAATCAGGAAGCT 4158193
>seq9575
Length=4383032
Score = 100 bits (110), Expect = 4e-16
Identities = 120/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| ||||| | |||||| || | |||||||| || || ||||| | ||| || ||
Sbjct 3945766 TCACCGATGAGGATGAGGCGGGCCGTCTGGAAGAGCTGTTCGTCGCCCCAGGTGGGGTGC 3945707
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| ||||| | || ||||| | |||||| || | |||||||| |||||||| | |
Sbjct 3945706 TCAGCCTTCAGCAGGTCACACACGCGGTTGTGCTCACGCAGCCAGATCGTGGCGTAGAGC 3945647
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394
||||||||||| | ||| ||||| |||| || || |||||||
Sbjct 3945646 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACAGCCA 3945604
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716741856903360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |