Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6889 161 2e-34 seq899 150 4e-31 seq504 136 1e-26 seq3764 127 5e-24 seq11974 104 6e-17 >seq6889 Length=11136585 Score = 161 bits (178), Expect = 2e-34 Identities = 171/223 (77%), Gaps = 7/223 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| ||||||||||| || || || || || |||||||| |||| Sbjct 1034471 AGGTCAAAATGC---AAATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGG 1034415 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| ||||||||||||| || || ||||| ||||| || ||||| || Sbjct 1034414 TGGA--GCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 1034357 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||| | || ||||| ||||| || ||||| |||||||| | ||||| Sbjct 1034356 TCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCT 1034297 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 | | ||||| ||| |||| || || || || ||||| || ||| Sbjct 1034296 TTCTGATTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTT 1034254 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| ||||| || || ||| Sbjct 1034232 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTAGA--GCCCAGTG 1034175 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| || || || ||||||| Sbjct 1034174 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGC 1034115 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||| | | |||||| | ||||| ||| Sbjct 1034114 AGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATTGCCGCACTCTTTCTGATTACAACA 1034055 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 1034054 TCCAGAAAGAGTCGACCCTGCACCTGGT 1034027 >seq899 Length=2520420 Score = 150 bits (166), Expect = 4e-31 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 2264853 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 2264796 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 2264795 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 2264736 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 2264735 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 2264676 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || | | |||||| Sbjct 2264675 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 2264635 Score = 150 bits (166), Expect = 4e-31 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 2265081 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 2265024 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 2265023 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 2264964 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 2264963 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 2264904 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || | | |||||| Sbjct 2264903 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 2264863 Score = 150 bits (166), Expect = 4e-31 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||| | |||||||| || ||| Sbjct 2265309 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCTTGGAGGTGGA--GCCCAGTG 2265252 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 2265251 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 2265192 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| ||||||||| | || || | || || ||| Sbjct 2265191 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAACA 2265132 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || | | |||||| Sbjct 2265131 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 2265091 Score = 149 bits (164), Expect = 2e-30 Identities = 159/207 (77%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 2264625 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 2264568 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 2264567 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 2264508 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 2264507 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 2264448 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || ||||| |||| Sbjct 2264447 TCCAGAAAGAGTCCACTCTGCA-CTTG 2264422 Score = 127 bits (140), Expect = 5e-24 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || ||||| || ||||| || || || |||||||| || || Sbjct 2265537 CAGATCTTTGTAAAGACCCTCACTGGTAAAACCATTACTCTGGAGGTGGA--GCCAAGTG 2265480 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || || |||||||| ||||| || ||||| | Sbjct 2265479 ACACCATCGAGAATGTCAAGGTGAAGATACAAGAAAAAGAAGGCATCCCCCCAGACCAAC 2265420 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 2265419 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 2265360 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || | | |||||| Sbjct 2265359 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 2265319 >seq504 Length=1076656 Score = 136 bits (150), Expect = 1e-26 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || ||||| || || ||||| || || || || ||| || Sbjct 268281 CAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTTGACGTCGAGCCCTCGGAT 268340 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || ||||| || | ||||| ||||| || |||||||| ||||| ||||||||| Sbjct 268341 ACAACAGAAAACGTAAAGCCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAA 268400 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || || ||| | Sbjct 268401 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACATT 268460 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || | || || | ||| || |||||||| Sbjct 268461 CAAAAGGAGTTCACTCTTCGTCTAGTGTTGAGACT 268495 >seq3764 Length=1885950 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || | || || || ||||| || ||||| || ||| || Sbjct 1780095 CAGATTTTCGTGAAGACCCTGAGGGGGAAGACCATCACTCTTGAGGTCGAGCCCTCGGAT 1780154 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || | || || || ||||| ||||| || |||||||| ||||| ||||||||| Sbjct 1780155 ACAATAGGAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAA 1780214 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| | || || || || ||||||||| | ||| | | || || ||| | Sbjct 1780215 AGACTGATCTTTGTTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATT 1780274 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||||| || |||||||| Sbjct 1780275 CAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 1780309 >seq11974 Length=740964 Score = 104 bits (114), Expect = 6e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || ||||| | ||||| || || || Sbjct 250067 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCCTGAGGTCGAGCCCTTGGAT 250126 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||| || || || || ||| | |||| || |||||| ||||| ||||||||| Sbjct 250127 CCCATAGAAAATGTAAAGGTCAAGGTCCAGGGTAAGGAAGGAGCTCCTCCTGACCAGCAA 250186 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || |||||||| | ||| | | || || ||| | Sbjct 250187 AGACTGATCTTTGCTGGCAAGCAACTGAAAGATGGATGTACTTTGTCTGACTACAACATT 250246 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||||| | |||||||| Sbjct 250247 CAAAAGGAGTCCACTCTTGATCTTTTGTTGAGACT 250281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203498947964446