Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq6889 161 2e-34
seq899 150 4e-31
seq504 136 1e-26
seq3764 127 5e-24
seq11974 104 6e-17
>seq6889
Length=11136585
Score = 161 bits (178), Expect = 2e-34
Identities = 171/223 (77%), Gaps = 7/223 (3%)
Strand=Plus/Minus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| ||||||| |||| ||||||||||| || || || || || |||||||| ||||
Sbjct 1034471 AGGTCAAAATGC---AAATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGG 1034415
Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027
|||| || ||| ||||||||||||| || || ||||| ||||| || ||||| ||
Sbjct 1034414 TGGA--GCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 1034357
Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087
|| || |||||||| | || ||||| ||||| || ||||| |||||||| | |||||
Sbjct 1034356 TCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCT 1034297
Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130
| | ||||| ||| |||| || || || || ||||| || |||
Sbjct 1034296 TTCTGATTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTT 1034254
Score = 145 bits (160), Expect = 2e-29
Identities = 158/208 (76%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || |||||||| ||||| || || |||
Sbjct 1034232 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTAGA--GCCCAGTG 1034175
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||||||||||||||| || ||||| ||||| || ||||| || || || |||||||
Sbjct 1034174 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGC 1034115
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| ||||| || ||||| |||||| | | |||||| | ||||| |||
Sbjct 1034114 AGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATTGCCGCACTCTTTCTGATTACAACA 1034055
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| ||||| || || ||||| || ||
Sbjct 1034054 TCCAGAAAGAGTCGACCCTGCACCTGGT 1034027
>seq899
Length=2520420
Score = 150 bits (166), Expect = 4e-31
Identities = 167/221 (76%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||||| |||||||| || |||
Sbjct 2264853 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 2264796
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| || |||||||| || ||||| || |||||||
Sbjct 2264795 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 2264736
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 2264735 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 2264676
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| ||||| || || ||||| || || | | ||||||
Sbjct 2264675 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 2264635
Score = 150 bits (166), Expect = 4e-31
Identities = 167/221 (76%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||||| |||||||| || |||
Sbjct 2265081 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 2265024
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| || |||||||| || ||||| || |||||||
Sbjct 2265023 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 2264964
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 2264963 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 2264904
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| ||||| || || ||||| || || | | ||||||
Sbjct 2264903 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 2264863
Score = 150 bits (166), Expect = 4e-31
Identities = 167/221 (76%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||| | |||||||| || |||
Sbjct 2265309 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCTTGGAGGTGGA--GCCCAGTG 2265252
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| || |||||||| || ||||| || |||||||
Sbjct 2265251 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 2265192
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| ||||| |||||||| ||||||||| | || || | || || |||
Sbjct 2265191 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAACA 2265132
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| ||||| || || ||||| || || | | ||||||
Sbjct 2265131 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 2265091
Score = 149 bits (164), Expect = 2e-30
Identities = 159/207 (77%), Gaps = 5/207 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||||| |||||||| || |||
Sbjct 2264625 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 2264568
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| || |||||||| || ||||| || |||||||
Sbjct 2264567 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 2264508
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 2264507 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 2264448
Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128
|||| ||||| || || ||||| ||||
Sbjct 2264447 TCCAGAAAGAGTCCACTCTGCA-CTTG 2264422
Score = 127 bits (140), Expect = 5e-24
Identities = 162/221 (73%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || || || || ||||| || ||||| || || || |||||||| || ||
Sbjct 2265537 CAGATCTTTGTAAAGACCCTCACTGGTAAAACCATTACTCTGGAGGTGGA--GCCAAGTG 2265480
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| ||||| ||||| || || |||||||| ||||| || ||||| |
Sbjct 2265479 ACACCATCGAGAATGTCAAGGTGAAGATACAAGAAAAAGAAGGCATCCCCCCAGACCAAC 2265420
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 2265419 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 2265360
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| ||||| || || ||||| || || | | ||||||
Sbjct 2265359 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 2265319
>seq504
Length=1076656
Score = 136 bits (150), Expect = 1e-26
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || ||||| || || ||||| || || || || ||| ||
Sbjct 268281 CAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTTGACGTCGAGCCCTCGGAT 268340
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| | || ||||| || | ||||| ||||| || |||||||| ||||| |||||||||
Sbjct 268341 ACAACAGAAAACGTAAAGCCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAA 268400
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||| || || || || || ||||||||| | ||| | | || || ||| |
Sbjct 268401 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACATT 268460
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || | || || | ||| || ||||||||
Sbjct 268461 CAAAAGGAGTTCACTCTTCGTCTAGTGTTGAGACT 268495
>seq3764
Length=1885950
Score = 127 bits (140), Expect = 5e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || | || || || ||||| || ||||| || ||| ||
Sbjct 1780095 CAGATTTTCGTGAAGACCCTGAGGGGGAAGACCATCACTCTTGAGGTCGAGCCCTCGGAT 1780154
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || | || || || ||||| ||||| || |||||||| ||||| |||||||||
Sbjct 1780155 ACAATAGGAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAA 1780214
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||| | || || || || ||||||||| | ||| | | || || ||| |
Sbjct 1780215 AGACTGATCTTTGTTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATT 1780274
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || || || || ||||| || ||||||||
Sbjct 1780275 CAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 1780309
>seq11974
Length=740964
Score = 104 bits (114), Expect = 6e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || || || || || ||||| | ||||| || || ||
Sbjct 250067 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCCTGAGGTCGAGCCCTTGGAT 250126
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||| || || || || ||| | |||| || |||||| ||||| |||||||||
Sbjct 250127 CCCATAGAAAATGTAAAGGTCAAGGTCCAGGGTAAGGAAGGAGCTCCTCCTGACCAGCAA 250186
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||| || || || || || |||||||| | ||| | | || || ||| |
Sbjct 250187 AGACTGATCTTTGCTGGCAAGCAACTGAAAGATGGATGTACTTTGTCTGACTACAACATT 250246
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || || || || ||||| | ||||||||
Sbjct 250247 CAAAAGGAGTCCACTCTTGATCTTTTGTTGAGACT 250281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203498947964446
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |