Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq899 125 7e-24
seq6889 120 3e-22
>seq899
Length=2520420
Score = 125 bits (138), Expect = 7e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| ||||| ||| ||| ||||| ||||| ||||| || ||||||||| | || ||
Sbjct 2264648 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 2264707
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||| || ||||| || ||||| | ||| ||||| | ||| | || ||| ||||| |
Sbjct 2264708 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 2264767
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
|| || ||| | | | ||||| || | ||||||||||| || || || ||
Sbjct 2264768 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 2264827
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||| ||||| ||||| ||||||||
Sbjct 2264828 CCCGTCAAGGTCTTCACGAAGATCTGCAT 2264856
Score = 125 bits (138), Expect = 7e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| ||||| ||| ||| ||||| ||||| ||||| || ||||||||| | || ||
Sbjct 2264876 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 2264935
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||| || ||||| || ||||| | ||| ||||| | ||| | || ||| ||||| |
Sbjct 2264936 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 2264995
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
|| || ||| | | | ||||| || | ||||||||||| || || || ||
Sbjct 2264996 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 2265055
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||| ||||| ||||| ||||||||
Sbjct 2265056 CCCGTCAAGGTCTTCACGAAGATCTGCAT 2265084
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|||| ||||| ||| ||| ||||| ||||| ||||| || ||||||||| | || ||
Sbjct 2264420 ACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 2264479
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||| || ||||| || ||||| | ||| ||||| | ||| | || ||| ||||| |
Sbjct 2264480 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 2264539
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
|| || ||| | | | ||||| || | ||||||||||| || || || ||
Sbjct 2264540 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 2264599
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||| ||||| ||||| ||||||||
Sbjct 2264600 CCCGTCAAGGTCTTCACGAAGATCTGCAT 2264628
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| ||||| ||| ||| ||||| ||||| ||||| || |||||||| | || ||
Sbjct 2265104 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 2265163
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||| || ||||| || ||||| | ||| ||||| | ||| | || ||| ||||| |
Sbjct 2265164 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 2265223
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
|| || ||| | | | ||||| || | ||||||||||| || || || ||
Sbjct 2265224 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTG 2265283
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||| ||||| ||||| ||||||||
Sbjct 2265284 CCCGTCAAGGTCTTCACGAAGATCTGCAT 2265312
Score = 120 bits (132), Expect = 3e-22
Identities = 154/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| ||||| ||| ||| ||||| ||||| ||||| || ||||||||| | || ||
Sbjct 2265332 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 2265391
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||| || ||||| || |||| | ||||||||| | ||| | || || ||| | | ||
Sbjct 2265392 AGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGGATGC-CTTCTTTTTCTTG 2265450
Query 41774 -ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832
|| || ||| | | | ||||| || | ||||||||||| || || |||||
Sbjct 2265451 TATCTTCACCTTGACATTCTCGATGGTGTCACTTGGCTCCACCTCCAGAGTAATGGTTTT 2265510
Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| || || |||||||| || ||||||||
Sbjct 2265511 ACCAGTGAGGGTCTTTACAAAGATCTGCAT 2265540
>seq6889
Length=11136585
Score = 120 bits (132), Expect = 3e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| ||||| || ||||||||| ||||| || || || || |||||
Sbjct 1034246 AGACGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGG 1034305
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || |||||||||||||| || || || | ||| ||||| | ||||| || |||
Sbjct 1034306 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCC 1034365
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|| ||| ||| || ||||| | | ||||| || | ||||||||||| ||
Sbjct 1034366 TTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 1034425
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || || ||||| || || ||||| || ||||| ||
Sbjct 1034426 ATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCATTTT 1034466
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| ||||| || ||| ||||| ||||| || || || || |||||
Sbjct 1034018 AGACGGACTACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGG 1034077
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
|| || |||||||||||||| || || || | ||| ||||| | ||||| || |||
Sbjct 1034078 CAATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCC 1034137
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|| ||| ||| || ||||| | | ||||| || | ||| ||||||| ||
Sbjct 1034138 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTG 1034197
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || ||||| ||||| ||||| ||||||||
Sbjct 1034198 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034235
Score = 111 bits (122), Expect = 1e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|| ||| || | ||||| | ||||| ||||| || ||| ||||||||||| || ||
Sbjct 1033777 ACAGCCACCCCTAAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATC 1033836
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
|| || ||||| | || || |||||||||||||| || || || | ||| ||||| |
Sbjct 1033837 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGG 1033896
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811
||||| || ||||| ||| ||| || ||||| | ||||| || | |||
Sbjct 1033897 GGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGGTGGTGTCACTGGGCTC 1033956
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| || || | || || ||||| ||||| ||||| ||||||||
Sbjct 1033957 TTCCTCCAGGGTGATGGCCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462216977050800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |