Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq11472 251 7e-62 seq2631 215 5e-51 seq11501 105 7e-18 >seq11472 Length=944226 Score = 251 bits (278), Expect = 7e-62 Identities = 585/872 (67%), Gaps = 14/872 (2%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| || || || |||| || | || || | |||||||| || || || || Sbjct 784056 ACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGT 784115 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTAC-CCC 16780 || ||||||||||| || |||| ||||| || ||||||| || | || ||| Sbjct 784116 GAAATATTCTCCATAAAGTCAAGTGGATTTTCTACTCTGAAAACCTT---GCCAACACCC 784172 Query 16781 AGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTC 16840 || | || | ||| || || || ||||| || || || ||| | |||||||| Sbjct 784173 AGCCCCAGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAGAGCGCAGTTC 784232 Query 16841 ATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCT 16900 || || || | || || | || ||||| | | || ||||| |||||| Sbjct 784233 ATCCCAATGGGCTTCACTGGCGGGGCCTCCGTGAGGAGCTCCTGTTCTATCCTAACCGCA 784292 Query 16901 TCCTTA--ATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACA 16958 || | || || | |||| | ||| || ||| | ||| || |||| |||| Sbjct 784293 --CTGACGATTATTCCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTCGAACA 784350 Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018 |||| || || || || || ||||| |||||||||||||| ||||||||||| ||||||| Sbjct 784351 TCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCGTTGGAAAATG 784410 Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078 | | ||||||||| ||||||||| || | ||| || |||| || || || |||||| Sbjct 784411 TGAGGCCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAAG 784470 Query 17079 AGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138 |||| || || || || | ||||| || | ||||| ||||||| || ||||||| Sbjct 784471 AGAAGATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTGT 784530 Query 17139 TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198 | |||| | |||| || || || | ||||| ||| ||| || || |||| Sbjct 784531 CCCCGATCCGGCGCACGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGG 784590 Query 17199 CCTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256 | || | | || ||| |||| | ||| | || | || | || || | ||| || || Sbjct 784591 CATTGAAGAGAAATTCCCTTTCT-CTGGA-ATCTTTAATGTGAGTGTCAACGAGGAGACT 784648 Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 |||||||| || ||| |||| |||| ||| || || || ||||| || || |||||||| Sbjct 784649 CTACATTTCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTC 784708 Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 | || |||||||| | || || ||| | | ||||| || || ||||| || || Sbjct 784709 TGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACT 784768 Query 17377 CGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG 17436 || || | || |||| | |||| | |||||||| | || || || | || | Sbjct 784769 TGCCGCAGAGAAAGCCAGAACATGCGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTC 784828 Query 17437 CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGC 17496 || || || | || ||||| | ||||| || || | |||||||| |||| | || Sbjct 784829 CCGGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGC 784888 Query 17497 CTTTTTATACATATTCCAAATATCATTGTATT 17528 || || ||| | | |||||||||| ||||| Sbjct 784889 TTTCTTCTACGTCTGCCAAATATCACGGTATT 784920 >seq2631 Length=239737 Score = 215 bits (238), Expect = 5e-51 Identities = 577/871 (66%), Gaps = 16/871 (2%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| || || || |||| || | || || | |||||||| || || || || Sbjct 171520 ACGCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGT 171461 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTAC-CCC 16780 || ||||||||||| || |||| ||||| || ||||||| || | || ||| Sbjct 171460 GAAATATTCTCCATAAAGTCAAGTGGATTTTCTACTCTGAAAACCTT---GCCAACACCC 171404 Query 16781 AGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTC 16840 || || || | ||| || || || ||||| || || || ||| | |||||||| Sbjct 171403 AGCTCCAGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAGAGCGCAGTTC 171344 Query 16841 ATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCT 16900 || || || | || || | || ||||| | | || ||||| |||||| Sbjct 171343 ATCCCAATGGGCTTCACTGGCGGGGCCTCCGTGAGGAGCTCCTGTTCTATGCTAACCGCG 171284 Query 16901 TCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATC 16960 | || || | |||| | ||| || ||| | ||| || |||| |||||| Sbjct 171283 TTGACGATTATTCCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTCGAACATC 171224 Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 | || || || || || ||||| |||||||||||||| |||||||| || |||||||| Sbjct 171223 GGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTG 171164 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | ||||||||| ||||||||| || | ||| || |||| || || || |||||| || Sbjct 171163 AGGCCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAAGAG 171104 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || || || || | ||||| || | ||||| ||||||| || ||||||| Sbjct 171103 AAGATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTGTCC 171044 Query 17141 CGAATCCATTTCTGCACCCACTC-GGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 | |||| | |||| || ||||| ||||| | | ||| || || ||| | Sbjct 171043 CCGATCCGGCGCACGGCCCAATCTGGCTT----CTTTACAC-AGGCATTGTCTCGATGAC 170989 Query 17200 CTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTG 17257 || | | || ||| |||| | ||| | || | || | || || | ||| || || Sbjct 170988 ATTGAAGAGAAATTCCCTTTCT-CTGGA-ATCTTTAATGTGAGTGTCAACGAGGAGACTC 170931 Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317 |||||||| || ||| |||| |||| ||| || || || ||||| || || |||||||| Sbjct 170930 TACATTTCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTCT 170871 Query 17318 GCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTC 17377 | || |||||||| | | || ||| | | ||||| || || ||||| || || Sbjct 170870 GTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTT 170811 Query 17378 GCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGC 17437 || || | || |||| | ||| | |||||||| | | || || | || | | Sbjct 170810 GCTGCAGAGAAAGCCAGAACATGTGAAGTGAAATATCTCTTCTCAGGCTTCAGGGCTTCC 170751 Query 17438 CAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCC 17497 | || || | || ||||| | ||||| || || | ||||| || |||| | || Sbjct 170750 CGGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCAGCT 170691 Query 17498 TTTTTATACATATTCCAAATATCATTGTATT 17528 || |||||| | | |||||||||| ||||| Sbjct 170690 TTCTTATACGTCTGCCAAATATCACGGTATT 170660 >seq11501 Length=2026878 Score = 105 bits (116), Expect = 7e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 ||||||||||||| |||||||| || |||||||| | ||||||||| ||||||||| | Sbjct 1246983 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 1247042 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || ||||||||||| || || || || | ||||| | Sbjct 1247043 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 1247102 Query 17106 C 17106 | Sbjct 1247103 C 1247103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517469837793480