Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq11472 235 6e-57 seq2631 197 1e-45 seq6223 114 1e-20 seq11501 98.7 1e-15 >seq11472 Length=944226 Score = 235 bits (260), Expect = 6e-57 Identities = 414/601 (69%), Gaps = 4/601 (1%) Strand=Plus/Plus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 ||||||| ||||| || || || ||||| || |||| || ||||||||||| |||||| Sbjct 784338 AGGTGTTCGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGT 784397 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 ||||||||||| || | || ||||| ||||||||| || | |||||| |||| ||| Sbjct 784398 TCGTTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCA 784457 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363 || || || ||| |||| || || || || | ||||| || | ||||| ||||| Sbjct 784458 AAAGAACCAGAAGAGAAGATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTAC 784517 Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423 ||||| ||||| | | |||| | |||| || || || | |||| |||| | Sbjct 784518 GTAGCCTCTTTGTCCCCGATCCGGCGCACGGCCCAATCTGCCTTCTTCTTTACACAAGGC 784577 Query 16424 ATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTAT 16481 || || || ||||| || | | || ||| |||| || || ||| | || | || | Sbjct 784578 ATTGTCTCGATGGCATTGAAGAGAAATTCCCTTTCTCTGGA--ATCTTTAATGTGAGTGT 784635 Query 16482 CAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGA 16541 ||| || | ||| |||||||| || ||| |||| || | ||| || || || || |||| Sbjct 784636 CAACGAGGAGACTCTACATTTCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGA 784695 Query 16542 AGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCA 16601 | || || || || | || || ||||| | ||| || ||| ||| ||| ||||| | Sbjct 784696 AACAACGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTA 784755 Query 16602 CGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAG 16661 | || || |||||||| ||| | || |||| | ||| | |||||||| | || |||| Sbjct 784756 CTATGCCATCACTTGCCGCAGAGAAAGCCAGAACATGCGAAGTGAAATATCTCTCCTCAG 784815 Query 16662 ATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAA 16721 | || | || | | | || ||||| | ||||| || || | ||||||| Sbjct 784816 GCTTCAGGGCTTCCCGGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAA 784875 Query 16722 AGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGA 16781 || |||| | || || || ||| | | |||||||||| ||||| || ||||| | || Sbjct 784876 AGGAAGCCTCAGCTTTCTTCTACGTCTGCCAAATATCACGGTATTCGATAGGAAAGATGA 784935 Query 16782 C 16782 | Sbjct 784936 C 784936 >seq2631 Length=239737 Score = 197 bits (218), Expect = 1e-45 Identities = 585/889 (66%), Gaps = 20/889 (2%) Strand=Plus/Minus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || | || | || || |||||||||| || || || | Sbjct 171520 ACGCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGT 171461 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTAC-CCC 16018 || ||||| |||||||| |||| ||||| || ||||||| ||| | || ||| Sbjct 171460 GAAATATTCTCCATAAAGTCAAGTGGATTTTCTACTCTGAAAAC--CTT-GCCAACACCC 171404 Query 16019 AGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTA 16078 || ||| | | ||| ||||| || ||||| || || || ||| | |||| || Sbjct 171403 AGCTCCAGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAGAGCGCAGTTC 171344 Query 16079 ATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138 || || || | || || | || | || | | | |||||||| |||||| Sbjct 171343 ATCCCAATGGGCTTCACTGGCGGGGCCTCCGTGAGGAGCTCCTGTTCTATGCTAACCGCG 171284 Query 16139 TCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATT 16198 | || || | || ||| || || ||| | || ||||||| ||||| Sbjct 171283 TTGACGATTATTCCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTCGAACATC 171224 Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 | || || ||||| || |||| || ||||||||||| |||||||| |||||||| || Sbjct 171223 GGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTG 171164 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| ||||||||| || | |||||| |||| ||||| || || ||| || Sbjct 171163 AGGCCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAAGAG 171104 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || || || || || | ||||| || | ||||| |||||||||| ||||| | Sbjct 171103 AAGATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTGTCC 171044 Query 16379 CGAATCCATTTCTGTACCCATTC-GGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 | |||| | |||| || ||||| |||| || | ||| || || ||| | Sbjct 171043 CCGATCCGGCGCACGGCCCAATCTGGCTT----CTTTACAC-AGGCATTGTCTCGATGAC 170989 Query 16438 CTT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || | | || ||| |||| || || ||| | || | || |||| || | ||| Sbjct 170988 ATTGAAGAGAAATTCCCTTTCTCTGGA--ATCTTTAATGTGAGTGTCAACGAGGAGACTC 170931 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 |||||||| || ||| |||| || | ||| || || || || ||||| || || || || Sbjct 170930 TACATTTCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTCT 170871 Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615 | || || ||||| | || || ||| ||| ||| ||||| || || || |||||| Sbjct 170870 GTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTT 170811 Query 16616 GCAGCAAAAAACGCC--AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATAT 16673 || ||| | || ||| || ||||| | |||||||| | | |||| | || | Sbjct 170810 GCTGCAGAGAAAGCCAGAACATGTG--AAGTGAAATATCTCTTCTCAGGCTTCAGGGCTT 170753 Query 16674 GCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTG 16733 || | | | || ||||| | ||||| || || | ||||| ||| |||| | | Sbjct 170752 CCCGGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCAG 170693 Query 16734 CCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 | || |||||| | | |||||||||| ||||| || ||||| | ||| Sbjct 170692 CTTTCTTATACGTCTGCCAAATATCACGGTATTCGATAGGAAAGATGAC 170644 >seq6223 Length=75078 Score = 114 bits (126), Expect = 1e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | || ||||| ||||| ||||| Sbjct 21902 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 21843 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || ||||| ||||| || || || |||| ||||| | Sbjct 21842 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 21783 Query 16344 C 16344 | Sbjct 21782 C 21782 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 15925 AACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA 15984 ||| ||||| || ||||| || ||||| ||||||||||| || ||||||||||||||||| Sbjct 36173 AACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTCCATAAAATCAAA 36114 Query 15985 GGGATT 15990 |||||| Sbjct 36113 GGGATT 36108 >seq11501 Length=2026878 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 ||||||||||| |||||||| |||||||| || | || ||||| ||||||||| || Sbjct 1246985 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTTTG 1247044 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 1247045 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 1247104 Query 16346 ATTAATCGTTCC 16357 | | |||||| Sbjct 1247105 ACGACACGTTCC 1247116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511339535324520