Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq7436 111 1e-19 >seq7436 Length=43218 Score = 111 bits (122), Expect = 1e-19 Identities = 359/550 (65%), Gaps = 12/550 (2%) Strand=Plus/Minus Query 18805 TTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATT 18864 |||| |||| ||||| || | || | | ||||| ||||| ||| || || | | Sbjct 39895 TTTATAGCTTTCAGTGAAGGCTTTGGGTGGACGAATACAAAGA-TGTGGATTTAAATTTA 39837 Query 18865 TACAG--CAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGA 18922 | ||| |||||| | || || ||||||| | || || ||||| ||||| ||||| || Sbjct 39836 TTCAGGTCAAGGAGTAGACCAACTGCAAAAGCTGATTGACACAATCAAAACCAACCCTGA 39777 Query 18923 AAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAA----TGGTAC 18978 | | || |||| ||| ||| ||||||||| |||| ||| || | || || Sbjct 39776 AGACAGAAGAATCATTCTATGTGCTTGGAATCGAAAGATCTTCCTCTCATACCCTGCCAC 39717 Query 18979 --TACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCA 19036 | || | || || | | || || || ||||| | | | | | | |||||| | Sbjct 39716 CCTGCCCCTGTGCCATGCCCTTTGCCACTTCTACGTGGTGAGCCATCAGCTGTCCTGC-A 39658 Query 19037 AGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGC 19096 | |||||||| || || || | |||||| || || | | |||| | || | ||||| Sbjct 39657 GCTGTACCAGAGGTCAGGAGACAGGGGCCTGGGCGTGTCCTGCAACCTCGCCAGCTATGC 39598 Query 19097 ACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATAC 19156 || || |||||||| | || | ||||| || || | || || | | || || Sbjct 39597 CCTGCTCACCTACATGACCGAACACATCACAGGCCTGAAGCCAGGTGACTCTGTACACAC 39538 Query 19157 AATGGGGGATGCACATATTTACTTGAATCATATAGATGCTT-TAAAAGTGCAGCTAGCTC 19215 || | |||||||| |||||| || |||| || || ||| | ||| ||||||| Sbjct 39537 TTTGCGAGATGCACACATTTACCTGGATCACATTGA-GCTGCTGAAAATGCAGCTTCAGG 39479 Query 19216 GATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGATATAAACGACT 19275 || ||| ||||| || || ||||| || |||| || | || |||||| Sbjct 39478 GAGAATCAAGGCCTTTCCCAAAGCTCAAAATCCTTGGAAAAGTTGAGAAAATCGACGACT 39419 Query 19276 TTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTAAAAATGGAAA 19335 | || || || |||||| |||| || || | ||| || ||| | | |||||||||| Sbjct 39418 TCAAGGCTGAAGACTTTCAGATTGAAGGCTACAGTCCCCATCCCACTATTAAAATGGAAA 39359 Query 19336 TGGCTCTTTA 19345 ||||| |||| Sbjct 39358 TGGCTGTTTA 39349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399446979667995