Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq11651 286 4e-72 seq828 217 2e-51 seq2160 129 7e-25 seq229 129 7e-25 seq858 127 2e-24 seq4892 89.7 6e-13 seq3483 87.8 2e-12 >seq11651 Length=773564 Score = 286 bits (316), Expect = 4e-72 Identities = 266/338 (79%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | |||| | ||||| ||||||||||||| Sbjct 394487 AGCAGGGCTTCGATGTCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGT 394428 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||| | ||||||| ||||||||||||||||||||| |||||||||||| Sbjct 394427 ACGGGCACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGCAACGTCGTTGCGG 394368 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| |||| || |||||| ||| ||| | | |||||| || Sbjct 394367 CACACCGGAGACCAGGTGATGAACTTGGGGTCTGTCATGAGGGCAGTGGCGTCGTCACTG 394308 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| ||||| || |||||||| ||||||||||| ||| | | || || ||| Sbjct 394307 GGCGTGGGCAGAGCCTCACGAAGGAAGGCAAAGAGCGGATGCGCCTTCTCGCCATTCACC 394248 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||||| ||||| |||||||| ||| || || || || | ||| Sbjct 394247 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCGCCGCCTGGTCGTACATACTTG 394188 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || | |||||| | |||| ||| |||||||| Sbjct 394187 AGGCAATTTAGGATCTCCTCGTTCTTGGCATTTTCCTG 394150 Score = 178 bits (196), Expect = 2e-39 Identities = 166/211 (79%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 393887 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAGGCCCCGGGGCCCGAGGC 393828 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 ||||||| || || |||||||| ||||| |||||||| || | |||||||| ||||| | Sbjct 393827 GCCGCTGAAGGTCATTCATCTGGGTGTAGTCCCGGACAGTTGTGCCTCAGAGCGACGCCA 393768 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| ||||||| ||| |||||| | | | || ||| |||| || || || |||| Sbjct 393767 CATTCTCAATGAGCAGCACCTTGCCCCGCAGGGACCCCAAGTTCACGGGCTCCCCGCCGG 393708 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | |||||| || |||||||||||||| || Sbjct 393707 CCAGCGGGCGCGCAGAGAAGGCGTACACCGA 393677 >seq828 Length=471236 Score = 217 bits (240), Expect = 2e-51 Identities = 282/389 (72%), Gaps = 12/389 (3%) Strand=Plus/Plus Query 83158 CCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAG 83217 ||||||||| || |||| ||||| ||||||||| |||| || ||||||| || ||| Sbjct 420061 CCAGGCCACTTCTTTGCCACACACCAGAGACCAGGTGATGAACTTGGGGTCGGTCCTGAG 420120 Query 83218 CGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATG 83277 | | | || | || |||| ||||| ||||| || ||||||||||||||||| | Sbjct 420121 GGCAGTGGCGGCGACACTGGGCGTGGGCAGAGCCTCGCGAAGGAAGGCGAAGAGCGGGTA 420180 Query 83278 TGCCCTTGCACCGTTGACCTCG--------CACTTCTCGAAGAGCATAAAGTTCGGCTCG 83329 ||| | || || |||||| ||| ||||||||||||| ||||| |||||| Sbjct 420181 CGCCTGCGAGCCATTCACCTCGCGCTTCTCCACCTCTCGAAGAGCATGAAGTTGGGCTCG 420240 Query 83330 AAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTT 83389 || | ||| || || | ||||| ||| ||| || || ||||||| || |||||||| Sbjct 420241 AACCTGTTGCCTGGTCTGACGTACTTGAGGCAATTCAGGATCTCG---TTTGGGGCGTTT 420297 Query 83390 TCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGG 83449 ||||| || || ||| |||| |||| ||| | ||||| ||||| || || | || ||| Sbjct 420298 TCCTGATGCCCAAACCGGTTGCACGCGAAGCTGAGCACGACCAG-CCTCGGGAGCCGAGG 420356 Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509 |||||| |||||| |||| ||| |||| ||| || ||| | |||| ||| || || Sbjct 420357 CGCCGCCTCAGCTCCTTCACCTGTGTGTCGTCCTGGGCCGCTGTGCCTCCGAGCGATGCC 420416 Query 83510 ACGTTCTCGATGAGCAAGACCCGGCCCCG 83538 | || ||| ||||||| | | | |||||| Sbjct 420417 AAGTCCTCAATGAGCAGGGCTCTGCCCCG 420445 >seq2160 Length=278183 Score = 129 bits (142), Expect = 7e-25 Identities = 166/226 (73%), Gaps = 5/226 (2%) Strand=Plus/Plus Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCAC 83118 |||||| || | || |||||||| | ||| ||| | ||| ||||||||||||| |||| Sbjct 78717 CAGGGCTTCAACGTTGGGCTCCATGTCCATGGTTAGAAAGCAGTGGCTGTACCTGTGCAC 78776 Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| || | ||||||| ||||||||| || |||||||||||||| ||| ||| Sbjct 78777 GGGCACATTGTTGGGGCCCACCAGGAACTTCTCCAACTTCCAGGCCACGTCACTGCAGCA 78836 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCT--CATGTCGTCGCTA 83236 |||| |||||||| | | || || | | ||| || ||||| |||| ||| || Sbjct 78837 CACTAAAGACCAGGTGAAGTACTTGGAGCCAGTCATGA--GTGCTGGGATGTTGTCACTG 78894 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCC 83282 | ||||||||| | || | | |||||| ||||||| ||||||| Sbjct 78895 GACGCCGGCAGAGTGTCAGGAAAGAAGGC-AAGAGCGAGTGTGCCC 78939 >seq229 Length=637023 Score = 129 bits (142), Expect = 7e-25 Identities = 241/351 (69%), Gaps = 10/351 (3%) Strand=Plus/Plus Query 83052 GGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACC 83111 |||| |||||| | |||||| | | ||||| | | |||| | | | ||| |||||||| Sbjct 260828 GGGGCAGCAGGACTTCGATGGCAGCCTCCAGGTCGAGGGACAGAAACCGGCGGCTGTACG 260887 Query 83112 TGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGT 83171 || |||||| | ||||| | |||| || || ||||| |||||||||||| |||||| Sbjct 260888 TGTGCACGG-CACACCGTCCGGGCCCAGCAGGAGCTTCTGGAAGTTCCAGGCGACGTCGC 260946 Query 83172 TGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGT 83231 ||||| |||| ||| |||||| | ||||| ||||||| ||||||| | | ||||| Sbjct 260947 TGCGGTACACCAGAGTCCAGGCGAGGAGCTTGGGGTCGGTCACGAGGGCGGGGGCGTCGT 261006 Query 83232 CGCTAGGCGCCGGCA--GGGCCT------CTCGTAG-GAAGGCGAAGAGCGGATGTGCCC 83282 | || |||| ||| |||| | | | | | | |||||| |||| | || ||| Sbjct 261007 CACTGGGCGTGCGCACTGGGCGTGCGCAGCGCCTCGCGCAGGCGATGAGCCGGTGCGCCT 261066 Query 83283 TTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAG 83342 || ||||| | |||| ||| | | |||| | | | |||| || ||| | | Sbjct 261067 GCGCGCCGTTCCCGTCGCCCTTGGCCAGGAGCCTGAGATCGGGCTGGAGCCCGCCGTCTG 261126 Query 83343 GACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 ||||||| | ||| || |||||| |||||| ||| ||||||| Sbjct 261127 ATCGGACGTAGCTAAGGCCCTTCAGGATCTCCTCATTCTTGGCATTTTCCT 261177 Score = 122 bits (134), Expect = 1e-22 Identities = 160/218 (73%), Gaps = 8/218 (4%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCT-AGG 83449 |||| || || ||||| || | |||||| || ||| | ||||| ||| | || || ||| Sbjct 261442 CCTGTTGCCCAAACTGCTTGCTCGGGAAGCCGAGCGCGACCAGGCCCGGGGCCCCCGAGG 261501 Query 83450 ---CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGAC 83506 |||||||||||||| |||||||| |||| |||| |||||| || ||| ||| ||| Sbjct 261502 TGCCGCCGCTGCAGCTCATTCATCTGGGTGTGGTCCCAGACCGTCTTAACTCCGAGCGAC 261561 Query 83507 GCTA---CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCT 83563 || | ||||||| |||||| || | |||| | | |||| | |||||| ||||| Sbjct 261562 GCCACGTCGTTCTCAGTGAGCAGCGCCTTGGCCCGCAGGGAGCCCAGGCTCACGGGTTCC 261621 Query 83564 CCTCCGGTAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 || |||| | |||||| || ||| ||| | |||| || Sbjct 261622 CCACCGGACAGCGGGCGCGCAGAGGAGG-GGACACGGA 261658 >seq858 Length=471084 Score = 127 bits (140), Expect = 2e-24 Identities = 193/267 (72%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| |||||| || || ||| Sbjct 288628 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTTGCCTCACGCCTGC 288570 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 ||||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 288569 TCGTGCACCTGTTCCCCGAGCTCTTCACCCATGAGAACCTGCGCAAGCAGTACAACTGCA 288510 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| ||| | | |||| ||||| Sbjct 288509 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAACTCATCCGCCACTAC 288451 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTGGC 50646 |||||| |||| ||||| ||| || || ||||| |||| ||| ||||| ||| Sbjct 288450 GTGCAGCTGCTCTACCCGCGGGCCAAGAATGACCGCGTCTGGA-CACTGGAGTTCGTGGG 288392 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||||||||||||||| Sbjct 288391 CAAACTGGACGAGCGCTGCCGGCGCCG 288365 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 49919 TCCTCTCCCGGGGAGCTGGCGGTGCTCCTACTGCACAAGGTCTTCCAGGAGCTCTTTGAC 49978 || ||||| |||||| | ||||| |||| |||||| | |||||| |||||||||||| Sbjct 289089 TCGTCTCCAGGGGAGTTCGCGGTCTTCCTTCTGCACCGGCTCTTCCCCGAGCTCTTTGAC 289030 Query 49979 GCGCGCCAGCTGCGCC-GCTGCTACAGCTGCTACGGCGACGGGCGCACGCATTGTCTGGA 50037 || ||||| || || | |||||||||||||| ||||| ||| ||| ||||| Sbjct 289029 CACCGGAAGCTGGGCGAGCAG-TACAGCTGCTACGGGGACGGAGGCAAGCAGGAGCTGGA 288971 Query 50038 CCCTGCGCGCCTGCAACTGATCCGGCACTGCGTGGCGCTTTGCTTCCC 50085 ||| | | ||||| | ||||| ||| | || | | | |||||| Sbjct 288970 CCCACAGAGGCTGCAGATCATCCGCAACTACACGGAGATCTACTTCCC 288923 >seq4892 Length=120308 Score = 89.7 bits (98), Expect = 6e-13 Identities = 227/342 (66%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCG 83115 ||| ||| || |||||||||||| | | | |||| || || | ||||||| | || Sbjct 35694 GAGGAGGCGCTTGATGTCGGGCTCGATGTTGATGGTCGGGAAGGTGCGGCTGTAGCGTCG 35753 Query 83116 CACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175 | |||| || || | || | | ||||||||| |||||||| | |||||| ||| Sbjct 35754 GAAGGGCTCCCCCTCTGGCCCGATGAGGAACTTCTCAAAGTTCCAAGACACGTCTGAGCG 35813 Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCT 83235 | ||| || ||| |||| || ||| ||| | | ||| | | ||||||| | Sbjct 35814 GTGCACAGGGCTCCAAATGATGAACTTGGGATCGGTTATGAGGGAAAACGGGTCGTCG-T 35872 Query 83236 AGGCGCCGGCAGGGCCTCTCGT--AGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTG 83293 | | | || | || | || | ||| ||| ||||| ||||| | | ||| || Sbjct 35873 AAGGGTAGG-GGAGCTTATCCTTCAGGTAGGTGAAGACAGGATGCTCATTCTGACCATTC 35931 Query 83294 ACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGC 83353 || || ||||| | || || ||||| | |||| ||| || |||||| ||||||| | Sbjct 35932 ACATCACACTTTTGGATAAGGGTAAAGGTGGGCTGGAATCCACCCCCAGGGCGGACGTAC 35991 Query 83354 TTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGG 83395 || ||| | || |||||| ||||||| ||| |||||| Sbjct 35992 TTGAGGCTATTCAGGATCTCCTCATTCTGACAGTTCTCCTGG 36033 >seq3483 Length=186048 Score = 87.8 bits (96), Expect = 2e-12 Identities = 299/459 (65%), Gaps = 38/459 (8%) Strand=Plus/Plus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||| || |||||||| || ||||||| ||||| | || ||||| ||||||| Sbjct 148773 GAACTTCTCTAACTTCCAGGCAACATCGTTGCCACACACAG-AGCCCAGGTGATGAGCTT 148831 Query 83203 GGGGTC-GCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGA 83261 || || | | | | | | | |||| || ||| |||| ||||| || |||| Sbjct 148832 GGAATCTGTTGAAAACAGCGGT--TGTCAGCG---GGCTAGGGCAAGGCCTTCCGCAGGA 148886 Query 83262 AGGCGAAGAGCGGATGTGCCCTTGCA--CCGTTGACCTCGCACTTCTCGAAGAGCATAAA 83319 ||||| | ||| | |||| ||| || || | | | ||||||| ||| ||| | | Sbjct 148887 AGGCGCAAAGCAG--GTGCATCTGCGTGCCATTCATCACACACTTCTGGAAAAGCGTGA- 148943 Query 83320 GTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATT 83379 ||| | || | |||| |||||| || | |||| | Sbjct 148944 -------------------CCATCTCTGATGAGCTTGAGGGAATTCAGGGTCTCTTGGTA 148984 Query 83380 CTGGGCGTTTTCCTGGTGACCG-AACTGGTTACACGGGAACCCAAGCACTACCAGCCCCC 83438 || || ||| ||||| || | | |||||||| || ||||| || |||||||||| || Sbjct 148985 CTTGGTGTTCTCCTGATGCCTGGAACTGGTTGCATGGGAAGCCCGGCACTACCAGGCCTG 149044 Query 83439 GAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTC 83498 | || || ||| |||||||| ||||||||||||| | || | |||| | | || | Sbjct 149045 GGGCAA--AGTTGCCACTGCAGCTGGTTCATCTGAGTGCAGTCTCAGACCTTTGTGCCAC 149102 Query 83499 AGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAG 83558 |||| | || | ||||| ||||| | ||| ||| | || ||| | |||| || Sbjct 149103 AGAGCAATGCCGCTTTCTCAATGAGTAGCACCGTGCCAGGCTGGATGCCCAGGCTCCCAA 149162 Query 83559 GTTCTCCTCCGG--TAATCGGGCGTGCTGAGAAGGCGTA 83595 | || ||| || ||| |||| | | ||||||| ||| Sbjct 149163 GCTC-CCTGAGGGCTAA-CGGGTGCACAGAGAAGGTGTA 149199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608707679758440