Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq8558 125 6e-24 seq6001 122 7e-23 seq11356 118 9e-22 seq1561 102 7e-17 seq3070 100 2e-16 seq1478 100 2e-16 seq688 84.2 2e-11 >seq8558 Length=1191863 Score = 125 bits (138), Expect = 6e-24 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 300037 CCCCTC--AGACGGAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAAA 299980 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| ||||| ||| | || || ||||||||||| ||| | Sbjct 299979 GAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGA 299920 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||| || |||||| ||||| | ||| || |||| ||||||| | Sbjct 299919 TGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 299860 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||| ||| |||||||||||||| | || || || || || |||||||||| Sbjct 299859 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCATTTTGA 299809 >seq6001 Length=82083 Score = 122 bits (134), Expect = 7e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || || ||||| || || | || || ||| | || Sbjct 45614 AGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCATCT 45673 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||||| ||| | || || ||||||||||| ||| | |||||| || || Sbjct 45674 TCCAGCTGTTTGCTTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTTTCC 45733 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || |||| ||||||| |||| ||| |||||| Sbjct 45734 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 45793 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||||| || || ||||| || || || ||| |||||| Sbjct 45794 TTGCCAGTCAAGGTTTTCACGAAGATCTGCCTTTTGA 45830 >seq11356 Length=1134914 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||||| |||||| || || || ||||| ||||| | |||||| | | ||| Sbjct 1059011 AGGACCAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 1059070 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||| || ||| | || | ||||||||||| ||| | ||| || || || Sbjct 1059071 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTTTCT 1059130 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || |||| ||||||| |||| ||| |||||| Sbjct 1059131 TGGATCTTCCCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1059190 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || || || || || || ||||| || |||||| Sbjct 1059191 TTACCAGTCAAGGTCTTCACAAAGATCTGCATT 1059223 >seq1561 Length=353970 Score = 102 bits (112), Expect = 7e-17 Identities = 160/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || |||| | || |||||||| || | | Sbjct 203120 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCAACTCTCTCTGGATGTTATAATCAGAAA 203063 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC-CACGGGC 21068 | || || | || |||||||||||||| ||| | || || ||||||||||| ||| Sbjct 203062 GAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGG 203003 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||| || |||||| ||||| | ||| | |||| ||||||| Sbjct 203002 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGCGTCACTGGGCTCCACC 202943 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| || || || || || || || || ||||| Sbjct 202942 TCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 202896 >seq3070 Length=217634 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||| || ||||| || || ||||| || || | || || || | || Sbjct 177707 GAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 177766 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||||||||| ||| | || || ||||||||||| | | | | ||||||||| || Sbjct 177767 TTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAAGGAGGATGCCTTCCTTATC 177826 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||||| | ||| || |||| || |||| |||| ||| | ||| Sbjct 177827 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGACGGT 177886 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||| || | || | || || || ||||| Sbjct 177887 CTTGCCAGTCAGGGTCGTCACGAAGATCTGCAT 177919 >seq1478 Length=366608 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||| || ||||| || || ||||| || || | | || || |||| Sbjct 273088 GAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCGGCCGTC 273029 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 | |||||||||||| ||| | || || ||||||||||| |||||| |||||| || || Sbjct 273028 TTACAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGCGGGCATGCCTTCTTTATC 272969 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 | |||| ||||| | || || |||| ||||||| |||| ||| ||||| Sbjct 272968 CTGGGTCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 272909 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||| || | || || | || || ||||| Sbjct 272908 CTTGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 272876 >seq688 Length=501387 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20958 AGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGG 21017 || || | ||| | ||| | ||||||||||||||||||||| ||||| | || || || Sbjct 311235 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGT 311294 Query 21018 GCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCC 21077 | || ||||| || ||| | ||| | || ||||| |||||||| || | |||||| Sbjct 311295 CCATCTTCCAGTTGCTTGTCAGCAAAGATCAGTCTTTGCTGGTCGGGAGGAATTCCTTCC 311354 Query 21078 TTGTCGGCGATCTT 21091 ||||| |||||| Sbjct 311355 TTGTCCTGGATCTT 311368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422198931868076