Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq455 91.5 3e-13 >seq455 Length=563184 Score = 91.5 bits (100), Expect = 3e-13 Identities = 102/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||| ||||| ||| | ||||| || |||||||| ||||||||| | || || || Sbjct 218611 GCATTTTTCGGAGCCCAGATGAATTCCTTCATCCATGTGATTATGTACTCATACTACGGG 218670 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| ||||||| |||||| ||||||||||| || || || | Sbjct 218671 TTAACTGCCTTTGGCCC-ATGGATTCAGAA-GTATCTTTGGTGGAAACGATACCTGACCA 218728 Query 52175 TAATGCAGTTGGT 52187 | ||||| |||| Sbjct 218729 TGCTGCAGCTGGT 218741 Score = 89.7 bits (98), Expect = 9e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||||| ||| || ||||| || || || || || || || ||||| || || ||| Sbjct 217203 TGGTGGTACTTTATTTCTAAAGGAATCGAGTATTTAGACACAGTGTTTTTTATCCTGAGG 217262 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || ||| || || || || || |||||||||||||| | ||| |||||||| | Sbjct 217263 AAGAAAAACAACCAAGTCTCCTTCCTTCACGTATATCATCACTGTACAATGTTTACGTTG 217322 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAGG 52057 | ||||| || ||||| ||| | || || || |||| Sbjct 217323 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACAGG 217359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923061655528440