Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq11472 235 5e-57 seq2631 221 1e-52 seq11501 113 4e-20 seq6223 102 8e-17 >seq11472 Length=944226 Score = 235 bits (260), Expect = 5e-57 Identities = 588/887 (66%), Gaps = 12/887 (1%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||| | ||| ||| | ||||| || | |||||||| ||| |||| || || || ||| Sbjct 784050 GACGTCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 784109 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 || | ||||||||| |||||||| |||| ||||||| | | | || | Sbjct 784110 TCCAGTGAAATATTCTCCATAAAGTCAAGTGGATTTTCTACTCTGAAAACCTTGCCAACA 784169 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 |||| ||| || | ||| || ||||| ||||| || ||||| ||||| | | | ||| Sbjct 784170 CCCAGCCCCAGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAGAGCGCAG 784229 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 ||||| || || || || || || || || | | | | |||||| ||||| Sbjct 784230 TTCATCCCAATGGGCTTCACTGGCGGGGCCTCCGTGAGGAGCTCCTGTTCTATCCTAACC 784289 Query 16169 GCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT---TAATAAGTGTTTA 16225 || | |||||| || | ||| || | || ||| || || | ||||| Sbjct 784290 GCACTGACGATTATTCCTTTGACT---CTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTCG 784346 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 ||||| | || ||||| ||||| || || || ||||| || || || | ||||| ||| Sbjct 784347 AACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCGTTGGAA 784406 Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 ||||| || || ||||| |||||||||||||| | ||| || || | ||||| |||||| Sbjct 784407 AATGTGAGGCCGGGCATCAGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCA 784466 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAt 16403 ||| |||| || ||||| ||||||||||| || | | || || |||||||| || | Sbjct 784467 GAAGAGAAGATTCCTTCCACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCT 784526 Query 16404 ttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCT 16463 || | | | |||| ||||||| ||| || | || ||||| ||| ||| Sbjct 784527 TTGTCC--CCGATCCGGCGCACGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCT 784584 Query 16464 CTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTA 16523 | || ||||| || | | | | ||||| || |||| ||| | ||| || | || | Sbjct 784585 CGATGGCATTGAAGAGAAATTCCCTTTCTCTGGAATCTTTAATGTGAGTGTCAACGAGGA 784644 Query 16524 AACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAG 16583 ||| |||||||| ||||| | || |||| || || || || || || || || | | Sbjct 784645 GACTCTACATTTCAGAATGTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGG 784704 Query 16584 CTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCAT 16643 |||| | || || ||||| | ||||| || | |||||||| || ||||| |||| Sbjct 784705 CTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCAT 784764 Query 16644 CGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTA-TCTGAAAGT 16702 | || || ||| | || || || | || | | |||| | | || | | || | | Sbjct 784765 CACTTGCCGCAGAGAAAGCCAGAACATGCGAAGTGAAATATCTCTCCTCAGGCTTCAGGG 784824 Query 16703 TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCA 16762 || || || || || || || | || ||||| || | |||||||| ||||| Sbjct 784825 CTT-CCCGGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCC 784883 Query 16763 ACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809 |||| || || ||| | | ||| || || ||| | |||||||| Sbjct 784884 TCAGCTTTCTTCTACGTCTGCCAAATATCACGGTATTCGATAGGAAA 784930 >seq2631 Length=239737 Score = 221 bits (244), Expect = 1e-52 Identities = 575/869 (66%), Gaps = 16/869 (2%) Strand=Plus/Minus Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 ||||| || | |||||||| ||| |||| || || || ||||| | ||||||||| ||| Sbjct 171508 TGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCC 171449 Query 16007 ATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAAT 16066 ||||| |||| ||||||| | | | || | |||| |||| || | | Sbjct 171448 ATAAAGTCAAGTGGATTTTCTACTCTGAAAACCTTGCCAACACCCAGCTCCAGCATAAGT 171389 Query 16067 CTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTA 16126 || || ||||| ||||| || ||||| ||||| | | | |||||||| || || || Sbjct 171388 CTGTCTGCCACGAATTCGATGTACTGCTTCATCAGAGCGCAGTTCATCCCAATGGGCTTC 171329 Query 16127 ACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCT 16186 || || || || || | | | | |||||| ||||||| | | |||||| || Sbjct 171328 ACTGGCGGGGCCTCCGTGAGGAGCTCCTGTTCTATGCTAACCGCGTTGACGATTATTCCT 171269 Query 16187 CTTACTACACTATTTAACGGAGGGTT---TAATAAGTGTTTAAACATTATACAAGCAAAA 16243 | ||| || | || ||| || || | ||||| ||||| || ||||| Sbjct 171268 TTGACT---CTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTCGAACATCGGGCAGGCAAAG 171212 Query 16244 TCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATT 16303 ||||| || || || ||||| || || || | || || |||||||| || || ||||| Sbjct 171211 TCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATC 171152 Query 16304 AGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCA 16363 |||||||||||||| | ||| || || | ||||| ||||||||| |||| || ||||| Sbjct 171151 AGTCCTCGTTTTTTGAGCCAGAACATCGATGCAAAAGAACCAGAAGAGAAGATTCCTTCC 171092 Query 16364 ACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttctatccatt 16421 ||||||||||| || | | || || |||||||| || ||| | | | |||| Sbjct 171091 ACTGCGGCAAAGGCTGCGACACGTTCTCCGTACGTAGCCTCTTTGTCC--CCGATCCGGC 171034 Query 16422 ttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAAT 16481 ||||||| || || || |||||| ||| |||| || |||| || | | Sbjct 171033 GCACGGCCCAATCTGGCTT---CTTTACACAG-GCATTGTCTCGATGACATTGAAGAGAA 170978 Query 16482 AAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAAT 16541 | | ||||| || |||| ||| | ||| || | || | ||| |||||||| |||| Sbjct 170977 ATTCCCTTTCTCTGGAATCTTTAATGTGAGTGTCAACGAGGAGACTCTACATTTCAGAAT 170918 Query 16542 GAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTT 16601 | | || |||| || || || || || || || || | ||||| | || || |||| Sbjct 170917 GTGTGTTTTCCACGGCAATTTGGAAGCCGTAGAAACAACGGGCTTCTGTAATCTGAACTT 170858 Query 16602 CAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACG 16661 | | || || || | |||||||| || ||||| ||||| || |||||| | || | Sbjct 170857 CTTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAGAGAAAG 170798 Query 16662 CAAGTATGTGTTTAATAAAAt-ttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAA 16720 | || | ||| | | |||| | | ||| || | | || || || || Sbjct 170797 CCAGAACATGTGAAGTGAAATATCTCTTCTCAGGCTTCAGGGCTT-CCCGGTGCTGAATG 170739 Query 16721 TCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATT 16780 || || || | || ||||| || | ||||| || ||||| |||| || |||||| | Sbjct 170738 TCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCAGCTTTCTTATACGTC 170679 Query 16781 TTCCATATGTCTTCGTAAACAATAGGAAA 16809 | ||| || || ||| | |||||||| Sbjct 170678 TGCCAAATATCACGGTATTCGATAGGAAA 170650 >seq11501 Length=2026878 Score = 113 bits (124), Expect = 4e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 ||||| || || || | || || |||||||| || || ||||| |||||||||||||| Sbjct 1246985 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTTTG 1247044 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| ||||||||||| || Sbjct 1247045 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 1247104 Query 16379 AC 16380 || Sbjct 1247105 AC 1247106 >seq6223 Length=75078 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 ||||||| || ||||| | || ||||||||| | | | | |||||||| | Sbjct 36246 TTTAAAAGTCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCCGCCATAACTGCAAAAC 36187 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||||| || ||||| || ||||||||||||||||| || ||||| ||||| |||| Sbjct 36186 GTTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTT 36127 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 36126 CCATAAAATCAAAGGGATTTTCTG 36103 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 ||||| || || |||||||| |||||||||||||| ||| |||| |||||||| || | | Sbjct 32530 AATCTGTCAGCTACAAATTCAATATACTGTTTCATCAAAACACAATTCATTCCGATGAGT 32471 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAA 16149 ||| || | |||||||||||||| Sbjct 32470 CCAACTGGCAAGGCTTCTGTTAAAAA 32445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462444294024600